Chromosome 11 - Clone Overlaps

Chromosome 11 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_009407	NT_009308	NT_008953	NT_008937	NT_024164	NT_033238	NT_009368	NT_028310
NT_033239	NT_009325	NT_008957	NT_024194	NT_033233	NT_033231	NT_028309	NT_030795
NT_017854	NT_009062	NT_024163	NT_024275	NT_009038	NT_009306	NT_009307	NT_030792
NT_030801	NT_024200	NT_024283	NT_033235	NT_009182	NT_033242	NT_008952	NT_024172
NT_033236	NT_024189	NT_009237	NT_024229	NT_009020	NT_024192	NT_033915	NT_009296
NT_009178	NT_008978	NT_024343	NT_027118	NT_027110	NT_030109	NT_024169	NT_033902
NT_033903	NT_033913	NT_033994	NT_033237	NT_009405	NT_033232	NT_024160	NT_030106
NT_033241	NT_033923	NT_033926	NT_033900	NT_033929	NT_033930	NT_033925	NT_033924
NT_033928	NT_024149	NT_033927	NT_033243	NT_033240	NT_008984	NT_009151	NT_033244
NT_033899	NT_030800	NT_033901

NT_008984

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_008984	U73646	88130481	3	chr11	NT_008984	AP000827	88165804	3	21633	0	0	21633
S/G/Y/R/B/O	NT_008984	U73646	88130481	3	chr11	NT_033240	AP004833	87923064	3	35319	0	0	35319
S/G/Y/R/B/O	NT_008984	U73646	88130481	3			AP001769	88165804	1	17808	0	1134	18942
S/G/Y/R/B/O	NT_008984	AP000827	88165804	3	chr11	NT_008984	AP000648	88312623	3	106087	0	0	106087
S/G/Y/R/B/O	NT_008984	AP000827	88165804	3	chr11	NT_033240	AC024234	88076660	1	27569	0	8121	35690
S/G/Y/R/B/O	NT_008984	AP000827	88165804	3	chr11	NT_033240	AC060830	88063293	1	40700	1457	0	42157
S/G/Y/R/B/O	NT_008984	AP000827	88165804	3			AP001769	88312623	1	147119	2486	10995	160600
S/G/Y/R/B/O	NT_008984	AP000648	88312623	3	chr11	NT_008984	AP002364	88356178	3	42456	0	0	42456
S/G/Y/R/B/O	NT_008984	AP000648	88312623	3			AP001769	88165804	1	85673	2486	17386	105545
S/G/Y/R/B/O	NT_008984	AP002364	88356178	3	chr11	NT_008984	AP002002	88479419	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP002364	88356178	3			AC027789	88356178	1	67817	9416	1389	78622
S/G/Y/R/B/O	NT_008984	AP002364	88356178	3			AP002003	88312623	1	19854	0	0	19854
S/G/Y/R/B/O	NT_008984	AP002002	88479419	3	chr11	NT_008984	AP001875	88589530	3	2789	0	0	2789
S/G/Y/R/B/O	NT_008984	AP002002	88479419	3			AC027789	88312623	1	75970	3738	1381	81089
S/G/Y/R/B/O	NT_008984	AP002002	88479419	3			AP002003	88589530	1	76970	0	31314	108284
S/G/Y/R/B/O	NT_008984	AP001875	88589530	3	chr11	NT_008984	AP000684	88620741	3	2121	0	0	2121
S/G/Y/R/B/O	NT_008984	AP001875	88589530	3			AP002003	88479419	1	17915	1701	12615	32231
S/G/Y/R/B/O	NT_008984	AP000684	88620741	3	chr11	NT_008984	AP000651	88760597	3	3351	0	0	3351
S/G/Y/R/B/O	NT_008984	AP000684	88620741	3			AP002003	88589530	1	11956	0	0	11956
S/G/Y/R/B/O	NT_008984	AP000651	88760597	3	chr11	NT_008984	AP002782	88832240	3	2699	0	0	2699
S/G/Y/R/B/O	NT_008984	AP002782	88832240	3	chr11	NT_008984	AP003058	88982611	3	2073	0	0	2073
S/G/Y/R/B/O	NT_008984	AP002782	88832240	3			AC073233	88832240	1	63865	0	4888	68753
S/G/Y/R/B/O	NT_008984	AP003058	88982611	3	chr11	NT_008984	AP001002	89063536	3	0	1881	0	1881
S/G/Y/R/B/O	NT_008984	AP003058	88982611	3			AC073233	88982611	1	69184	2260	10919	82363
S/G/Y/R/B/O	NT_008984	AP001002	89063536	3	chr11	NT_008984	AP003386	89226035	3	2002	0	0	2002
S/G/Y/R/B/O	NT_008984	AP001002	89063536	3			AC073233	88832240	1	12153	0	0	12153
S/G/Y/R/B/O	NT_008984	AP001002	89063536	3			AC074215	88832240	1	88119	0	61504	149623
S/G/Y/R/B/O	NT_008984	AP003386	89226035	3	chr11	NT_008984	AP003485	89296030	3	0	1852	0	1852
S/G/Y/R/B/O	NT_008984	AP003386	89226035	3			AC074215	89226035	1	42674	0	14223	56897
S/G/Y/R/B/O	NT_008984	AP003485	89296030	3	chr11	NT_008984	AP002791	89461013	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003485	89296030	3			AC012216	89296030	1	86325	0	0	86325
S/G/Y/R/B/O	NT_008984	AP002791	89461013	3	chr11	NT_008984	AP003421	89629157	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP002791	89461013	3			AC012216	89226035	1	71561	1563	13149	86273
S/G/Y/R/B/O	NT_008984	AP002791	89461013	3			AC027268	89226035	1	127647	5340	0	132987
S/G/Y/R/B/O	NT_008984	AP003421	89629157	3	chr11	NT_008984	AP003028	89741500	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003421	89629157	3			AC011300	170099155	1	44270	0	0	44270
S/G/Y/R/B/O	NT_008984	AP003421	89629157	3			AC027268	170099155	1	15595	0	0	15595
S/G/Y/R/B/O	NT_008984	AP003421	89629157	3			AC068124	170099155	1	38227	6249	32735	77211
S/G/Y/R/B/O	NT_008984	AP003028	89741500	3	chr11	NT_008984	AP003177	89915732	3	128727	0	0	128727
S/G/Y/R/B/O	NT_008984	AP003028	89741500	3			AC011300	170099155	1	53558	0	110110	163668
S/G/Y/R/B/O	NT_008984	AP003028	89741500	3			AC025126	170099155	1	17067	15137	10610	42814
S/G/Y/R/B/O	NT_008984	AP003028	89741500	3			AC068124	170099155	1	46962	0	17892	64854
S/G/Y/R/B/O	NT_008984	AP003028	89741500	3			AC074022	170099155	1	93382	4967	63924	162273
S/G/Y/R/B/O	NT_008984	AP003177	89915732	3	chr11	NT_008984	AP003055	89958578	3	42417	0	0	42417
S/G/Y/R/B/O	NT_008984	AP003177	89915732	3			AC024715	89915732	1	25597	1813	0	27410
S/G/Y/R/B/O	NT_008984	AP003177	89915732	3			AC068124	89915732	1	14540	0	8127	22667
S/G/Y/R/B/O	NT_008984	AP003177	89915732	3			AC074022	89915732	1	61562	2539	50021	114122
S/G/Y/R/B/O	NT_008984	AP003055	89958578	3	chr11	NT_008984	AP002799	89999152	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003055	89958578	3			AC024715	89958578	1	81151	1813	0	82964
S/G/Y/R/B/O	NT_008984	AP002799	89999152	3	chr11	NT_008984	AP003056	90174760	3	2902	0	0	2902
S/G/Y/R/B/O	NT_008984	AP002799	89999152	3			AC024715	89915732	1	74790	2048	0	76838
S/G/Y/R/B/O	NT_008984	AP002799	89999152	3			AC025820	89915732	1	17439	4609	8936	30984
S/G/Y/R/B/O	NT_008984	AP003056	90174760	3	chr11	NT_008984	AP003124	90256837	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003056	90174760	3			AC025820	90174760	1	47021	2563	31831	81415
S/G/Y/R/B/O	NT_008984	AP003124	90256837	3	chr11	NT_008984	AP000722	90431455	3	86461	0	0	86461
S/G/Y/R/B/O	NT_008984	AP003124	90256837	3			AC021143	89999152	1	114654	3580	44039	162273
S/G/Y/R/B/O	NT_008984	AP000722	90431455	3	chr11	NT_008984	AP000805	90522709	3	25717	0	0	25717
S/G/Y/R/B/O	NT_008984	AP000722	90431455	3			AC021143	90431455	1	61995	0	8087	70082
S/G/Y/R/B/O	NT_008984	AP000722	90431455	3			AP001154	90522709	1	55508	13832	2792	72132
S/G/Y/R/B/O	NT_008984	AP000805	90522709	3	chr11	NT_008984	AP002514	90677964	3	8921	0	0	8921
S/G/Y/R/B/O	NT_008984	AP000805	90522709	3			AC021158	90256837	1	25992	2224	13309	41525
S/G/Y/R/B/O	NT_008984	AP000805	90522709	3			AP001154	90431455	1	84292	21509	7739	113540
S/G/Y/R/B/O	NT_008984	AP000805	90522709	3			AP002385	90431455	1	132560	6219	0	138779
S/G/Y/R/B/O	NT_008984	AP002514	90677964	3	chr11	NT_008984	AC067807	90871845	1	100054	0	0	100054
S/G/Y/R/B/O	NT_008984	AP002514	90677964	3			AC021158	90677964	1	113830	4287	17248	135365
S/G/Y/R/B/O	NT_008984	AP002514	90677964	3			AC024231	90677964	1	14806	0	0	14806
S/G/Y/R/B/O	NT_008984	AP002514	90677964	3			AP002385	90522709	1	17516	0	0	17516
S/G/Y/R/B/O	NT_008984	AP002514	90677964	3			AP002773	90522709	1	146868	4061	29276	180205
S/G/Y/R/B/O	NT_008984	AC067807	90871845	1	chr11	NT_008984	AP003171	90951904	3	34095	0	0	34095
S/G/Y/R/B/O	NT_008984	AC067807	90871845	1			AC016891	90522709	1	25536	2721	0	28257
S/G/Y/R/B/O	NT_008984	AC067807	90871845	1			AC021158	90522709	1	29418	0	1606	31024
S/G/Y/R/B/O	NT_008984	AC067807	90871845	1			AC024231	90522709	1	93930	2151	14224	110305
S/G/Y/R/B/O	NT_008984	AC067807	90871845	1			AP002773	90677964	1	30208	2540	28158	60906
S/G/Y/R/B/O	NT_008984	AC067807	90871845	1			AP003718	90951904	3	85000	0	0	85000
S/G/Y/R/B/O	NT_008984	AP003171	90951904	3	chr11	NT_008984	AP002371	91088904	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003171	90951904	3			AC016891	90951904	1	117790	2721	1176	121687
S/G/Y/R/B/O	NT_008984	AP003171	90951904	3			AC024231	90951904	1	66423	3722	29069	99214
S/G/Y/R/B/O	NT_008984	AP002371	91088904	3	chr11	NT_008984	AP003072	91243712	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP002371	91088904	3			AC016775	90871845	1	24817	0	0	24817
S/G/Y/R/B/O	NT_008984	AP002371	91088904	3			AC016891	90871845	1	62006	2146	0	64152
S/G/Y/R/B/O	NT_008984	AP002371	91088904	3			AC034173	90871845	1	114121	4850	7619	126590
S/G/Y/R/B/O	NT_008984	AP003072	91243712	3	chr11	NT_008984	AP003969	91347803	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003072	91243712	3			AC016775	90871845	1	77848	0	0	77848
S/G/Y/R/B/O	NT_008984	AP003072	91243712	3			AC034173	90871845	1	38643	0	0	38643
S/G/Y/R/B/O	NT_008984	AP003969	91347803	3	chr11	NT_008984	AP004242	91508943	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP003969	91347803	3			AC016775	90871845	1	62296	4091	6066	72453
S/G/Y/R/B/O	NT_008984	AP003969	91347803	3			AP003678	90871845	3	78152	0	0	78152
S/G/Y/R/B/O	NT_008984	AP004242	91508943	3	chr11	NT_008984	AP003499	91653335	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP004242	91508943	3			AC020664	90871845	1	37274	0	0	37274
S/G/Y/R/B/O	NT_008984	AP004242	91508943	3			AC027591	90871845	1	131325	0	380	131705
S/G/Y/R/B/O	NT_008984	AP003499	91653335	3	chr11	NT_008984	AP001273	91844072	3	2689	0	0	2689
S/G/Y/R/B/O	NT_008984	AP003499	91653335	3			AC027591	126648118	1	36900	0	0	36900
S/G/Y/R/B/O	NT_008984	AP003499	91653335	3			AP000792	126648118	1	116277	10381	2439	129097
S/G/Y/R/B/O	NT_008984	AP003499	91653335	3			AP001886	91844072	1	35721	0	10221	45942
S/G/Y/R/B/O	NT_008984	AP001273	91844072	3	chr11	NT_008984	AP001894	91899383	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP001273	91844072	3	chr5	NT_016755	AC010611	126648118	1	14040	9823	9527	33390
S/G/Y/R/B/O	NT_008984	AP001273	91844072	3			AP000715	126648118	1	10781	4132	19208	34121
S/G/Y/R/B/O	NT_008984	AP001273	91844072	3			AP000792	126648118	1	12033	0	0	12033
S/G/Y/R/B/O	NT_008984	AP001273	91844072	3			AP001886	126648118	1	47404	3427	2166	52997
S/G/Y/R/B/O	NT_008984	AP001894	91899383	3	chr11	NT_008984	AP002795	92048517	3	18394	0	0	18394
S/G/Y/R/B/O	NT_008984	AP001894	91899383	3			AC027589	126648118	1	110824	0	0	110824
S/G/Y/R/B/O	NT_008984	AP001894	91899383	3			AC068251	126648118	1	11253	2551	1746	15550
S/G/Y/R/B/O	NT_008984	AP001894	91899383	3			AP000715	126648118	1	76383	2409	6340	85132
S/G/Y/R/B/O	NT_008984	AP001894	91899383	3			AP001886	126648118	1	28409	2395	0	30804
S/G/Y/R/B/O	NT_008984	AP002795	92048517	3	chr11	NT_008984	AP003966	92195363	3	2812	0	0	2812
S/G/Y/R/B/O	NT_008984	AP002795	92048517	3			AC027589	92048517	1	35229	0	0	35229
S/G/Y/R/B/O	NT_008984	AP002795	92048517	3			AC068251	92048517	1	108848	13104	4438	126390
S/G/Y/R/B/O	NT_008984	AP002795	92048517	3			AC073382	92048517	1	146942	0	0	146942
S/G/Y/R/B/O	NT_008984	AP003966	92195363	3	chr11	NT_008984	AP002784	92289543	3	0	1483	0	1483
S/G/Y/R/B/O	NT_008984	AP003966	92195363	3			AC073382	92195363	1	20976	0	0	20976
S/G/Y/R/B/O	NT_008984	AP002784	92289543	3	chr11	NT_008984	AP000765	92467108	3	0	0	2001	2001
S/G/Y/R/B/O	NT_008984	AP002784	92289543	3			AP000613	92048517	1	57071	11347	18822	87240
S/G/Y/R/B/O	NT_008984	AP002784	92289543	3			AP001921	92467108	1	96030	0	0	96030
S/G/Y/R/B/O	NT_008984	AP000765	92467108	3	chr11	NT_008984	AP000786	92539018	3	2005	0	0	2005
S/G/Y/R/B/O	NT_008984	AP000765	92467108	3			AP001361	92539018	1	22531	0	1426	23957
S/G/Y/R/B/O	NT_008984	AP000786	92539018	3	chr11	NT_008984	AP000943	92612453	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP000786	92539018	3			AP001361	92467108	1	68694	0	0	68694
S/G/Y/R/B/O	NT_008984	AP000943	92612453	3	chr11	NT_008984	AP002376	92802744	3	61322	0	0	61322
S/G/Y/R/B/O	NT_008984	AP000943	92612453	3			AP000670	92467108	1	89645	6234	9120	104999
S/G/Y/R/B/O	NT_008984	AP000943	92612453	3			AP001361	92467108	1	69478	8466	2459	80403
S/G/Y/R/B/O	NT_008984	AP002376	92802744	3	chr11	NT_008984	AP001152	92902677	3	0	1489	0	1489
S/G/Y/R/B/O	NT_008984	AP002376	92802744	3			AC011007	92802744	1	62433	0	0	62433
S/G/Y/R/B/O	NT_008984	AP001152	92902677	3	chr11	NT_008984	AP002383	92992387	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP001152	92902677	3			AC011007	124094600	1	86010	0	0	86010
S/G/Y/R/B/O	NT_008984	AP001152	92902677	3			AC023756	124094600	1	43272	0	0	43272
S/G/Y/R/B/O	NT_008984	AP002383	92992387	3	chr11	NT_008984	AP001264	93160877	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP002383	92992387	3			AC023756	92802744	1	111771	0	2827	114598
S/G/Y/R/B/O	NT_008984	AP002383	92992387	3			AC032024	92802744	1	95297	1788	0	97085
S/G/Y/R/B/O	NT_008984	AP001264	93160877	3	chr11	NT_008984	AP000787	93234370	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP001264	93160877	3			AC016896	92802744	1	56048	1984	1609	59641
S/G/Y/R/B/O	NT_008984	AP001264	93160877	3			AC032024	92802744	1	54376	7344	1250	62970
S/G/Y/R/B/O	NT_008984	AP001264	93160877	3			AP000750	92802744	1	14683	3315	0	17998
S/G/Y/R/B/O	NT_008984	AP000787	93234370	3	chr11	NT_008984	AP001876	93406602	3	13127	0	0	13127
S/G/Y/R/B/O	NT_008984	AP000787	93234370	3			AC016896	92802744	1	78497	0	0	78497
S/G/Y/R/B/O	NT_008984	AP000787	93234370	3			AC021174	92802744	1	93724	1957	0	95681
S/G/Y/R/B/O	NT_008984	AP000787	93234370	3			AP000750	92802744	1	69523	9426	4515	83464
S/G/Y/R/B/O	NT_008984	AP000787	93234370	3			AP001801	92802744	1	82044	0	0	82044
S/G/Y/R/B/O	NT_008984	AP001876	93406602	3	chr11	NT_008984	AP000652	93590530	3	107456	0	0	107456
S/G/Y/R/B/O	NT_008984	AP001876	93406602	3			AC021174	93406602	1	79299	5260	1556	86115
S/G/Y/R/B/O	NT_008984	AP000652	93590530	3	chr11	NT_008984	AP001790	93598401	3	7863	0	0	7863
S/G/Y/R/B/O	NT_008984	AP001790	93598401	3	chr11	NT_008984	AP000820	93766254	3	88837	0	0	88837
S/G/Y/R/B/O	NT_008984	AP001790	93598401	3			AC073844	93406602	1	14345	7087	7817	29249
S/G/Y/R/B/O	NT_008984	AP000820	93766254	3	chr11	NT_008984	AP001877	93836791	3	0	0	0	0
S/G/Y/R/B/O	NT_008984	AP000820	93766254	3			AC073844	93766254	1	58366	14183	24380	96929
S/G/Y/R/B/O	NT_008984	AP001877	93836791	3	chr11	NT_008984	AP000870	94001746	3	20175	0	0	20175
S/G/Y/R/B/O	NT_008984	AP001877	93836791	3			AC073844	93598401	1	66321	5920	17003	89244
S/G/Y/R/B/O	NT_008984	AP001877	93836791	3			AP000627	93598401	3	96579	0	0	96579
S/G/Y/R/B/O	NT_008984	AP001877	93836791	3			AP000730	93598401	1	53758	3971	2400	60129
S/G/Y/R/B/O	NT_008984	AP001877	93836791	3			AP000771	93598401	1	89719	8571	9085	107375
S/G/Y/R/B/O	NT_008984	AP000870	94001746	3	chr11	NT_008984	AP000779	94160900	3	7934	0	0	7934
S/G/Y/R/B/O	NT_008984	AP000870	94001746	3			AP000627	94001746	3	43577	0	0	43577
S/G/Y/R/B/O	NT_008984	AP000870	94001746	3			AP000730	94001746	1	30210	0	2399	32609
S/G/Y/R/B/O	NT_008984	AP000870	94001746	3			AP000771	94001746	1	23494	0	11202	34696
S/G/Y/R/B/O	NT_008984	AP000870	94001746	3			AP000865	94160900	1	60486	2934	9672	73092
S/G/Y/R/B/O	NT_008984	AP000779	94160900	3	chr11	NT_008984	AP000848	94349558	3	58122	0	0	58122
S/G/Y/R/B/O	NT_008984	AP000779	94160900	3			AC011875	93836791	1	29923	5393	2276	37592
S/G/Y/R/B/O	NT_008984	AP000779	94160900	3			AP000612	93836791	1	64384	3293	9737	77414
S/G/Y/R/B/O	NT_008984	AP000779	94160900	3			AP000865	94349558	1	64662	4379	0	69041
S/G/Y/R/B/O	NT_008984	AP000779	94160900	3			AP001320	94001746	1	17939	5272	15322	38533
S/G/Y/R/B/O	NT_008984	AP000848	94349558	3	chr11	NT_008984	AP000929	94478266	3	30835	0	0	30835
S/G/Y/R/B/O	NT_008984	AP000848	94349558	3			AC011875	94001746	1	50878	1974	45498	98350
S/G/Y/R/B/O	NT_008984	AP000848	94349558	3			AP000612	94001746	1	41155	1588	4694	47437
S/G/Y/R/B/O	NT_008984	AP000848	94349558	3			AP000663	94001746	1	98545	11869	2480	112894
S/G/Y/R/B/O	NT_008984	AP000848	94349558	3			AP001320	94478266	1	110137	23406	20570	154113
S/G/Y/R/B/O	NT_008984	AP000929	94478266	3	chr11	NT_008984	AP003781	94644619	3	166344	0	0	166344
S/G/Y/R/B/O	NT_008984	AP000929	94478266	3			AC013596	94478266	2	133681	0	0	133681
S/G/Y/R/B/O	NT_008984	AP000929	94478266	3			AP001320	94349558	1	13892	1541	2725	18158
S/G/Y/R/B/O	NT_008984	AP003781	94644619	3
S/G/Y/R/B/O	NT_008984	AP003781	94644619	3			AC013596	94644619	2	154277	0	0	154277
S/G/Y/R/B/O	NT_008984	AP003781	94644619	3			AC018702	94644619	1	154250	0	0	154250