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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030792 | AC016904 | 20333207 | 1 | chr11 | NT_030792 | AC022484 | 20343960 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC016904 | 20333207 | 1 | chr11 | NT_030792 | AC040936 | 20792313 | 2 | 114897 | 0 | 2047 | 116944 |
| S/G/Y/R/B/O |
NT_030792 | AC016904 | 20333207 | 1 | chr11 | NT_030792 | AC055878 | 20649552 | 3 | 43873 | 0 | 2046 | 45919 |
| S/G/Y/R/B/O |
NT_030792 | AC016904 | 20333207 | 1 | chr11 | NT_030792 | AC104009 | 20935376 | 2 | 60651 | 0 | 0 | 60651 |
| S/G/Y/R/B/O |
NT_030792 | AC016904 | 20333207 | 1 | chr9 | NT_008438 | AL162732 | 103334468 | 3 | 15932 | 0 | 5066 | 20998 |
| S/G/Y/R/B/O |
NT_030792 | AC016904 | 20333207 | 1 |   |   | AL390202 | 103334468 | 1 | 17131 | 2712 | 0 | 19843 |
| S/G/Y/R/B/O |
NT_030792 | AC022484 | 20343960 | 1 | chr11 | NT_030792 | AC021114 | 20355751 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC022484 | 20343960 | 1 | chr11 | NT_030792 | AC026212 | 20510319 | 1 | 62940 | 10868 | 40438 | 114246 |
| S/G/Y/R/B/O |
NT_030792 | AC022484 | 20343960 | 1 | chr11 | NT_030792 | AC055878 | 20649552 | 3 | 38476 | 0 | 10390 | 48866 |
| S/G/Y/R/B/O |
NT_030792 | AC022484 | 20343960 | 1 | chr11 | NT_030792 | AC090174 | 20457696 | 1 | 65955 | 13403 | 28277 | 107635 |
| S/G/Y/R/B/O |
NT_030792 | AC021114 | 20355751 | 1 | chr11 | NT_030792 | AC015951 | 20362117 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC021114 | 20355751 | 1 | chr11 | NT_030792 | AC024046 | 20392580 | 1 | 69808 | 4553 | 15733 | 90094 |
| S/G/Y/R/B/O |
NT_030792 | AC021114 | 20355751 | 1 | chr11 | NT_030792 | AC107882 | 21106169 | 2 | 13674 | 0 | 0 | 13674 |
| S/G/Y/R/B/O |
NT_030792 | AC015951 | 20362117 | 1 | chr11 | NT_030792 | AP002757 | 20384145 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC015951 | 20362117 | 1 | chr11 | NT_030792 | AC090707 | 21301608 | 1 | 73238 | 0 | 0 | 73238 |
| S/G/Y/R/B/O |
NT_030792 | AC015951 | 20362117 | 1 | chr11 | NT_030792 | AP002794 | 21301746 | 1 | 46189 | 0 | 2371 | 48560 |
| S/G/Y/R/B/O |
NT_030792 | AC015951 | 20362117 | 1 |   |   | AC108005 | 21301608 | 2 | 150465 | 0 | 19983 | 170448 |
| S/G/Y/R/B/O |
NT_030792 | AP002757 | 20384145 | 1 | chr11 | NT_030792 | AC024046 | 20392580 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AP002757 | 20384145 | 1 | chr11 | NT_030792 | AC067794 | 21798017 | 3 | 55463 | 6170 | 1055 | 62688 |
| S/G/Y/R/B/O |
NT_030792 | AP002757 | 20384145 | 1 | chr11 | NT_030792 | AC090857 | 21891267 | 3 | 140676 | 11448 | 8160 | 160284 |
| S/G/Y/R/B/O |
NT_030792 | AP002757 | 20384145 | 1 |   |   | AC019137 | 21301746 | 1 | 35064 | 8244 | 6822 | 50130 |
| S/G/Y/R/B/O |
NT_030792 | AP002757 | 20384145 | 1 |   |   | AP002756 | 22034082 | 1 | 48671 | 10500 | 2294 | 61465 |
| S/G/Y/R/B/O |
NT_030792 | AC024046 | 20392580 | 1 | chr11 | NT_030792 | AC090174 | 20457696 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC024046 | 20392580 | 1 | chr11 | NT_030792 | AC021114 | 20355751 | 1 | 69808 | 4553 | 15733 | 90094 |
| S/G/Y/R/B/O |
NT_030792 | AC024046 | 20392580 | 1 | chr11 | NT_030792 | AC090858 | 22517028 | 1 | 23703 | 0 | 10819 | 34522 |
| S/G/Y/R/B/O |
NT_030792 | AC024046 | 20392580 | 1 | chr11 | NT_030792 | AP002758 | 22568909 | 1 | 16197 | 0 | 5303 | 21500 |
| S/G/Y/R/B/O |
NT_030792 | AC090174 | 20457696 | 1 | chr11 | NT_030792 | AC026212 | 20510319 | 1 | 110966 | 0 | 23886 | 134852 |
| S/G/Y/R/B/O |
NT_030792 | AC090174 | 20457696 | 1 | chr11 | NT_030792 | AC022484 | 20343960 | 1 | 65955 | 13403 | 28277 | 107635 |
| S/G/Y/R/B/O |
NT_030792 | AC026212 | 20510319 | 1 | chr11 | NT_030792 | AC055878 | 20649552 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC026212 | 20510319 | 1 | chr11 | NT_030792 | AC022484 | 20343960 | 1 | 62940 | 10868 | 40438 | 114246 |
| S/G/Y/R/B/O |
NT_030792 | AC055878 | 20649552 | 3 | chr11 | NT_030792 | AC040936 | 20792313 | 2 | 40871 | 0 | 0 | 40871 |
| S/G/Y/R/B/O |
NT_030792 | AC055878 | 20649552 | 3 | chr11 | NT_030792 | AC016904 | 20333207 | 1 | 43873 | 0 | 2046 | 45919 |
| S/G/Y/R/B/O |
NT_030792 | AC055878 | 20649552 | 3 | chr11 | NT_030792 | AC022484 | 20343960 | 1 | 38476 | 0 | 10390 | 48866 |
| S/G/Y/R/B/O |
NT_030792 | AC040936 | 20792313 | 2 | chr11 | NT_030792 | AC104009 | 20935376 | 2 | 77395 | 0 | 4646 | 82041 |
| S/G/Y/R/B/O |
NT_030792 | AC040936 | 20792313 | 2 | chr11 | NT_030792 | AC016904 | 20333207 | 1 | 114897 | 0 | 2047 | 116944 |
| S/G/Y/R/B/O |
NT_030792 | AC104009 | 20935376 | 2 | chr11 | NT_030792 | AC107886 | 20972277 | 3 | 27244 | 0 | 0 | 27244 |
| S/G/Y/R/B/O |
NT_030792 | AC104009 | 20935376 | 2 | chr11 | NT_030792 | AC016904 | 20333207 | 1 | 60651 | 0 | 0 | 60651 |
| S/G/Y/R/B/O |
NT_030792 | AC107886 | 20972277 | 3 | chr11 | NT_030792 | AC107882 | 21106169 | 2 | 71074 | 0 | 0 | 71074 |
| S/G/Y/R/B/O |
NT_030792 | AC107882 | 21106169 | 2 | chr11 | NT_030792 | AC090707 | 21301608 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC107882 | 21106169 | 2 | chr11 | NT_030792 | AC021114 | 20355751 | 1 | 13674 | 0 | 0 | 13674 |
| S/G/Y/R/B/O |
NT_030792 | AC090707 | 21301608 | 1 | chr11 | NT_030792 | AP002794 | 21301746 | 1 | 104124 | 6515 | 9858 | 120497 |
| S/G/Y/R/B/O |
NT_030792 | AC090707 | 21301608 | 1 | chr11 | NT_030792 | AC015951 | 20362117 | 1 | 73238 | 0 | 0 | 73238 |
| S/G/Y/R/B/O |
NT_030792 | AC090707 | 21301608 | 1 | chr11 | NT_030792 | AC087279 | 21395445 | 1 | 83853 | 0 | 0 | 83853 |
| S/G/Y/R/B/O |
NT_030792 | AC090707 | 21301608 | 1 |   |   | AC068549 | 20362117 | 1 | 48207 | 7076 | 20092 | 75375 |
| S/G/Y/R/B/O |
NT_030792 | AC090707 | 21301608 | 1 |   |   | AC108005 | 21395445 | 2 | 81564 | 1876 | 943 | 84383 |
| S/G/Y/R/B/O |
NT_030792 | AP002794 | 21301746 | 1 | chr11 | NT_030792 | AC087279 | 21395445 | 1 | 30174 | 3857 | 8115 | 42146 |
| S/G/Y/R/B/O |
NT_030792 | AP002794 | 21301746 | 1 | chr11 | NT_030792 | AC015951 | 20362117 | 1 | 46189 | 0 | 2371 | 48560 |
| S/G/Y/R/B/O |
NT_030792 | AP002794 | 21301746 | 1 |   |   | AC068549 | 20362117 | 1 | 20618 | 1812 | 7787 | 30217 |
| S/G/Y/R/B/O |
NT_030792 | AP002794 | 21301746 | 1 |   |   | AC108005 | 21301608 | 2 | 32121 | 0 | 6511 | 38632 |
| S/G/Y/R/B/O |
NT_030792 | AC087279 | 21395445 | 1 | chr11 | NT_030792 | AC010811 | 21580027 | 1 | 73584 | 0 | 0 | 73584 |
| S/G/Y/R/B/O |
NT_030792 | AC087279 | 21395445 | 1 | chr11 | NT_030792 | AC090707 | 21301608 | 1 | 83853 | 0 | 0 | 83853 |
| S/G/Y/R/B/O |
NT_030792 | AC087279 | 21395445 | 1 |   |   | AC068549 | 21580027 | 1 | 107146 | 11061 | 59364 | 177571 |
| S/G/Y/R/B/O |
NT_030792 | AC010811 | 21580027 | 1 | chr11 | NT_030792 | AC069575 | 21624519 | 3 | 46926 | 0 | 0 | 46926 |
| S/G/Y/R/B/O |
NT_030792 | AC010811 | 21580027 | 1 |   |   | AC068549 | 21301746 | 1 | 44043 | 6445 | 14737 | 65225 |
| S/G/Y/R/B/O |
NT_030792 | AC069575 | 21624519 | 3 | chr11 | NT_030792 | AC067794 | 21798017 | 3 | 97238 | 0 | 0 | 97238 |
| S/G/Y/R/B/O |
NT_030792 | AC069575 | 21624519 | 3 |   |   | AP002756 | 21798017 | 1 | 69529 | 2868 | 983 | 73380 |
| S/G/Y/R/B/O |
NT_030792 | AC067794 | 21798017 | 3 | chr11 | NT_030792 | AC090857 | 21891267 | 3 | 37304 | 0 | 0 | 37304 |
| S/G/Y/R/B/O |
NT_030792 | AC067794 | 21798017 | 3 | chr11 | NT_030792 | AP002757 | 20384145 | 1 | 55463 | 6170 | 1055 | 62688 |
| S/G/Y/R/B/O |
NT_030792 | AC067794 | 21798017 | 3 |   |   | AP002756 | 21891267 | 1 | 149259 | 5376 | 12081 | 166716 |
| S/G/Y/R/B/O |
NT_030792 | AC090857 | 21891267 | 3 | chr11 | NT_030792 | AC099730 | 22034082 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030792 | AC090857 | 21891267 | 3 | chr11 | NT_030792 | AP002757 | 20384145 | 1 | 140676 | 11448 | 8160 | 160284 |
| S/G/Y/R/B/O |
NT_030792 | AC090857 | 21891267 | 3 |   |   | AC019137 | 20384145 | 1 | 127119 | 10494 | 5327 | 142940 |
| S/G/Y/R/B/O |
NT_030792 | AC090857 | 21891267 | 3 |   |   | AP002756 | 21798017 | 1 | 47969 | 4842 | 13541 | 66352 |
| S/G/Y/R/B/O |
NT_030792 | AC099730 | 22034082 | 3 | chr11 | NT_030792 | AC091146 | 22073505 | 3 | 114573 | 0 | 0 | 114573 |
| S/G/Y/R/B/O |
NT_030792 | AC099730 | 22034082 | 3 | chr11 | NT_030792 | AC105190 | 22211558 | 2 | 10992 | 0 | 0 | 10992 |
| S/G/Y/R/B/O |
NT_030792 | AC099730 | 22034082 | 3 |   |   | AC019137 | 20384145 | 1 | 34284 | 2963 | 1250 | 38497 |
| S/G/Y/R/B/O |
NT_030792 | AC099730 | 22034082 | 3 |   |   | AP002764 | 20384145 | 1 | 106697 | 2709 | 611 | 110017 |
| S/G/Y/R/B/O |
NT_030792 | AC091146 | 22073505 | 3 | chr11 | NT_030792 | AC105190 | 22211558 | 2 | 34386 | 0 | 0 | 34386 |
| S/G/Y/R/B/O |
NT_030792 | AC091146 | 22073505 | 3 |   |   | AP002764 | 22211558 | 1 | 116838 | 2711 | 0 | 119549 |
| S/G/Y/R/B/O |
NT_030792 | AC105190 | 22211558 | 2 | chr11 | NT_030792 | AC108460 | 22330009 | 3 | 22488 | 0 | 0 | 22488 |
| S/G/Y/R/B/O |
NT_030792 | AC105190 | 22211558 | 2 | chr11 | NT_030792 | AC099730 | 22034082 | 3 | 10992 | 0 | 0 | 10992 |
| S/G/Y/R/B/O |
NT_030792 | AC105190 | 22211558 | 2 |   |   | AP002764 | 22330009 | 1 | 27468 | 0 | 0 | 27468 |
| S/G/Y/R/B/O |
NT_030792 | AC108460 | 22330009 | 3 | chr11 | NT_030792 | AC021436 | 22336263 | 3 | 120036 | 0 | 0 | 120036 |
| S/G/Y/R/B/O |
NT_030792 | AC108460 | 22330009 | 3 | chr11 | NT_030792 | AC090858 | 22517028 | 1 | 13217 | 0 | 0 | 13217 |
| S/G/Y/R/B/O |
NT_030792 | AC108460 | 22330009 | 3 |   |   | AP002775 | 22568909 | 1 | 112299 | 0 | 1425 | 113724 |
| S/G/Y/R/B/O |
NT_030792 | AC021436 | 22336263 | 3 | chr11 | NT_030792 | AC090858 | 22517028 | 1 | 73632 | 0 | 0 | 73632 |
| S/G/Y/R/B/O |
NT_030792 | AC021436 | 22336263 | 3 | chr11 | NT_030792 | AC084808 | 22570050 | 1 | 63677 | 0 | 0 | 63677 |
| S/G/Y/R/B/O |
NT_030792 | AC021436 | 22336263 | 3 | chr11 | NT_030792 | AP002758 | 22568909 | 1 | 60531 | 2574 | 0 | 63105 |
| S/G/Y/R/B/O |
NT_030792 | AC021436 | 22336263 | 3 |   |   | AP002775 | 22568909 | 1 | 142441 | 0 | 1426 | 143867 |
| S/G/Y/R/B/O |
NT_030792 | AC090858 | 22517028 | 1 | chr11 | NT_030792 | AP002758 | 22568909 | 1 | 122430 | 0 | 12915 | 135345 |
| S/G/Y/R/B/O |
NT_030792 | AC090858 | 22517028 | 1 | chr11 | NT_030792 | AC024046 | 20392580 | 1 | 23703 | 0 | 10819 | 34522 |
| S/G/Y/R/B/O |
NT_030792 | AC090858 | 22517028 | 1 | chr11 | NT_030792 | AC084808 | 22570050 | 1 | 128374 | 0 | 0 | 128374 |
| S/G/Y/R/B/O |
NT_030792 | AC090858 | 22517028 | 1 | chr11 | NT_030792 | AC108460 | 22330009 | 3 | 13217 | 0 | 0 | 13217 |
| S/G/Y/R/B/O |
NT_030792 | AC090858 | 22517028 | 1 |   |   | AP002775 | 22568909 | 1 | 67114 | 2408 | 7428 | 76950 |
| S/G/Y/R/B/O |
NT_030792 | AP002758 | 22568909 | 1 | chr11 | NT_030792 | AC084808 | 22570050 | 1 | 43556 | 0 | 6992 | 50548 |
| S/G/Y/R/B/O |
NT_030792 | AP002758 | 22568909 | 1 | chr11 | NT_030792 | AC021436 | 22336263 | 3 | 60531 | 2574 | 0 | 63105 |
| S/G/Y/R/B/O |
NT_030792 | AP002758 | 22568909 | 1 | chr11 | NT_030792 | AC024046 | 20392580 | 1 | 16197 | 0 | 5303 | 21500 |
| S/G/Y/R/B/O |
NT_030792 | AP002758 | 22568909 | 1 |   |   | AP002775 | 22330009 | 1 | 55049 | 2408 | 7385 | 64842 |
| S/G/Y/R/B/O |
NT_030792 | AC084808 | 22570050 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030792 | AC084808 | 22570050 | 1 | chr11 | NT_030792 | AC021436 | 22336263 | 3 | 63677 | 0 | 0 | 63677 |
| S/G/Y/R/B/O |
NT_030792 | AC084808 | 22570050 | 1 | chr11 | NT_030792 | AC090858 | 22517028 | 1 | 128374 | 0 | 0 | 128374 |
| S/G/Y/R/B/O |
NT_030792 | AC084808 | 22570050 | 1 |   |   | AP002775 | 22568909 | 1 | 39764 | 2407 | 0 | 42171 |
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