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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024192 | AC025069 | 41919984 | 3 | chr11 | NT_024192 | AC021824 | 42079970 | 2 | 110643 | 0 | 0 | 110643 |
| S/G/Y/R/B/O |
NT_024192 | AC021824 | 42079970 | 2 | chr11 | NT_024192 | AC023943 | 42129750 | 2 | 12310 | 0 | 0 | 12310 |
| S/G/Y/R/B/O |
NT_024192 | AC023943 | 42129750 | 2 | chr11 | NT_024192 | AC090822 | 42270485 | 1 | 5334 | 0 | 0 | 5334 |
| S/G/Y/R/B/O |
NT_024192 | AC090822 | 42270485 | 1 | chr11 | NT_024192 | AC016845 | 42323014 | 1 | 114768 | 0 | 7054 | 121822 |
| S/G/Y/R/B/O |
NT_024192 | AC090822 | 42270485 | 1 | chr11 | NT_024192 | AC090138 | 42364701 | 3 | 73729 | 0 | 7035 | 80764 |
| S/G/Y/R/B/O |
NT_024192 | AC090822 | 42270485 | 1 |   |   | AC027608 | 42129750 | 1 | 26068 | 3996 | 24969 | 55033 |
| S/G/Y/R/B/O |
NT_024192 | AC016845 | 42323014 | 1 | chr11 | NT_024192 | AC090138 | 42364701 | 3 | 106201 | 0 | 0 | 106201 |
| S/G/Y/R/B/O |
NT_024192 | AC016845 | 42323014 | 1 |   |   | AC027608 | 67993526 | 1 | 49788 | 7820 | 32266 | 89874 |
| S/G/Y/R/B/O |
NT_024192 | AC090138 | 42364701 | 3 | chr11 | NT_024192 | AC021006 | 42553932 | 3 | 35545 | 0 | 0 | 35545 |
| S/G/Y/R/B/O |
NT_024192 | AC090138 | 42364701 | 3 | chr11 | NT_024192 | AC090822 | 42270485 | 1 | 73729 | 0 | 7035 | 80764 |
| S/G/Y/R/B/O |
NT_024192 | AC090138 | 42364701 | 3 |   |   | AC027608 | 42553932 | 1 | 98298 | 12769 | 59394 | 170461 |
| S/G/Y/R/B/O |
NT_024192 | AC021006 | 42553932 | 3 | chr11 | NT_024192 | AC021956 | 42702159 | 2 | 106124 | 0 | 0 | 106124 |
| S/G/Y/R/B/O |
NT_024192 | AC021006 | 42553932 | 3 |   |   | AC027608 | 42702159 | 1 | 18637 | 0 | 14171 | 32808 |
| S/G/Y/R/B/O |
NT_024192 | AC021956 | 42702159 | 2 | chr11 | NT_024192 | AC023442 | 42793899 | 3 | 68621 | 0 | 0 | 68621 |
| S/G/Y/R/B/O |
NT_024192 | AC021956 | 42702159 | 2 |   |   | AC020710 | 42364701 | 1 | 35373 | 1772 | 12574 | 49719 |
| S/G/Y/R/B/O |
NT_024192 | AC023442 | 42793899 | 3 | chr11 | NT_024192 | AC040928 | 42902758 | 2 | 72104 | 0 | 0 | 72104 |
| S/G/Y/R/B/O |
NT_024192 | AC023442 | 42793899 | 3 |   |   | AC020710 | 42793899 | 1 | 74748 | 0 | 59287 | 134035 |
| S/G/Y/R/B/O |
NT_024192 | AC023442 | 42793899 | 3 |   |   | AC060831 | 42902758 | 1 | 24204 | 0 | 0 | 24204 |
| S/G/Y/R/B/O |
NT_024192 | AC040928 | 42902758 | 2 | chr11 | NT_024192 | AC104570 | 42929735 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024192 | AC040928 | 42902758 | 2 |   |   | AC020710 | 42902758 | 1 | 40403 | 0 | 12447 | 52850 |
| S/G/Y/R/B/O |
NT_024192 | AC040928 | 42902758 | 2 |   |   | AC060831 | 42793899 | 1 | 24196 | 0 | 0 | 24196 |
| S/G/Y/R/B/O |
NT_024192 | AC040928 | 42902758 | 2 |   |   | AC080027 | 42793899 | 1 | 30669 | 0 | 0 | 30669 |
| S/G/Y/R/B/O |
NT_024192 | AC040928 | 42902758 | 2 |   |   | AC087278 | 42793899 | 1 | 54065 | 0 | 0 | 54065 |
| S/G/Y/R/B/O |
NT_024192 | AC104570 | 42929735 | 2 | chr11 | NT_024192 | AC079917 | 43046853 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024192 | AC104570 | 42929735 | 2 |   |   | AC060831 | 42793899 | 1 | 118020 | 0 | 34315 | 152335 |
| S/G/Y/R/B/O |
NT_024192 | AC104570 | 42929735 | 2 |   |   | AC080027 | 60445912 | 1 | 108254 | 5721 | 1494 | 115469 |
| S/G/Y/R/B/O |
NT_024192 | AC104570 | 42929735 | 2 |   |   | AC087278 | 60445912 | 1 | 159339 | 0 | 0 | 159339 |
| S/G/Y/R/B/O |
NT_024192 | AC104570 | 42929735 | 2 |   |   | AC090818 | 60445912 | 2 | 68377 | 0 | 0 | 68377 |
| S/G/Y/R/B/O |
NT_024192 | AC079917 | 43046853 | 2 | chr11 | NT_024192 | AC024187 | 43141375 | 1 | 96559 | 2644 | 9832 | 109035 |
| S/G/Y/R/B/O |
NT_024192 | AC079917 | 43046853 | 2 |   |   | AC060831 | 43141375 | 1 | 11379 | 0 | 0 | 11379 |
| S/G/Y/R/B/O |
NT_024192 | AC079917 | 43046853 | 2 |   |   | AC080027 | 43141375 | 1 | 14076 | 0 | 1494 | 15570 |
| S/G/Y/R/B/O |
NT_024192 | AC079917 | 43046853 | 2 |   |   | AC090818 | 43141375 | 2 | 49627 | 0 | 0 | 49627 |
| S/G/Y/R/B/O |
NT_024192 | AC024187 | 43141375 | 1 | chr11 | NT_024192 | AC090458 | 43198673 | 1 | 33610 | 2141 | 0 | 35751 |
| S/G/Y/R/B/O |
NT_024192 | AC024187 | 43141375 | 1 |   |   | AC090818 | 43198673 | 2 | 24440 | 0 | 3655 | 28095 |
| S/G/Y/R/B/O |
NT_024192 | AC090458 | 43198673 | 1 | chr11 | NT_024192 | AC024475 | 43330306 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024192 | AC090458 | 43198673 | 1 | chr11 | NT_024192 | AC110599 | 44213136 | 2 | 78202 | 0 | 0 | 78202 |
| S/G/Y/R/B/O |
NT_024192 | AC024475 | 43330306 | 1 | chr11 | NT_024192 | AC090832 | 43531786 | 3 | 42534 | 0 | 0 | 42534 |
| S/G/Y/R/B/O |
NT_024192 | AC090832 | 43531786 | 3 | chr11 | NT_024192 | AC068385 | 43577629 | 3 | 49452 | 0 | 0 | 49452 |
| S/G/Y/R/B/O |
NT_024192 | AC068385 | 43577629 | 3 | chr11 | NT_024192 | AC044839 | 43745458 | 1 | 3286 | 0 | 0 | 3286 |
| S/G/Y/R/B/O |
NT_024192 | AC044839 | 43745458 | 1 | chr11 | NT_024192 | AC087442 | 43836258 | 2 | 60874 | 1452 | 21138 | 83464 |
| S/G/Y/R/B/O |
NT_024192 | AC044839 | 43745458 | 1 | chr11 | NT_024192 | AC016913 | 43836281 | 1 | 23122 | 0 | 39466 | 62588 |
| S/G/Y/R/B/O |
NT_024192 | AC087442 | 43836258 | 2 | chr11 | NT_024192 | AC016913 | 43836281 | 1 | 108632 | 2901 | 79845 | 191378 |
| S/G/Y/R/B/O |
NT_024192 | AC087442 | 43836258 | 2 | chr11 | NT_024192 | AC024193 | 44016373 | 1 | 18425 | 0 | 0 | 18425 |
| S/G/Y/R/B/O |
NT_024192 | AC016913 | 43836281 | 1 | chr11 | NT_024192 | AC018716 | 43836647 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024192 | AC016913 | 43836281 | 1 | chr11 | NT_024192 | AC044839 | 43745458 | 1 | 23122 | 0 | 39466 | 62588 |
| S/G/Y/R/B/O |
NT_024192 | AC018716 | 43836647 | 3 | chr11 | NT_024192 | AC024193 | 44016373 | 1 | 117681 | 0 | 0 | 117681 |
| S/G/Y/R/B/O |
NT_024192 | AC024193 | 44016373 | 1 | chr11 | NT_024192 | AC110599 | 44213136 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024192 | AC024193 | 44016373 | 1 | chr11 | NT_024192 | AC087442 | 43836258 | 2 | 18425 | 0 | 0 | 18425 |
| S/G/Y/R/B/O |
NT_024192 | AC110599 | 44213136 | 2 | chr11 | NT_024192 | AC034161 | 44284361 | 1 | 60316 | 2262 | 0 | 62578 |
| S/G/Y/R/B/O |
NT_024192 | AC110599 | 44213136 | 2 | chr11 | NT_024192 | AC090458 | 43198673 | 1 | 78202 | 0 | 0 | 78202 |
| S/G/Y/R/B/O |
NT_024192 | AC110599 | 44213136 | 2 | chr11 | NT_024192 | AC090599 | 44286628 | 2 | 51785 | 0 | 0 | 51785 |
| S/G/Y/R/B/O |
NT_024192 | AC110599 | 44213136 | 2 |   |   | AC021862 | 2994095 | 1 | 47881 | 2593 | 0 | 50474 |
| S/G/Y/R/B/O |
NT_024192 | AC034161 | 44284361 | 1 | chr11 | NT_024192 | AC090599 | 44286628 | 2 | 78185 | 1941 | 8843 | 88969 |
| S/G/Y/R/B/O |
NT_024192 | AC034161 | 44284361 | 1 |   |   | AC021862 | 43531786 | 1 | 50780 | 1935 | 15045 | 67760 |
| S/G/Y/R/B/O |
NT_024192 | AC090599 | 44286628 | 2 | chr11 | NT_024192 | AC105908 | 44449973 | 2 | 24152 | 0 | 0 | 24152 |
| S/G/Y/R/B/O |
NT_024192 | AC090599 | 44286628 | 2 | chr11 | NT_024192 | AC110599 | 44213136 | 2 | 51785 | 0 | 0 | 51785 |
| S/G/Y/R/B/O |
NT_024192 | AC090599 | 44286628 | 2 |   |   | AC021862 | 44213136 | 1 | 114895 | 5414 | 28240 | 148549 |
| S/G/Y/R/B/O |
NT_024192 | AC105908 | 44449973 | 2 | chr11 | NT_024192 | AC104249 | 44602101 | 2 | 77574 | 0 | 0 | 77574 |
| S/G/Y/R/B/O |
NT_024192 | AC105908 | 44449973 | 2 |   |   | AC021862 | 44213136 | 1 | 10698 | 2924 | 0 | 13622 |
| S/G/Y/R/B/O |
NT_024192 | AC104249 | 44602101 | 2 | chr11 | NT_024192 | AC104362 | 44695847 | 2 | 94811 | 0 | 0 | 94811 |
| S/G/Y/R/B/O |
NT_024192 | AC104362 | 44695847 | 2 | chr11 | NT_024192 | AC109810 | 44752244 | 2 | 29616 | 0 | 0 | 29616 |
| S/G/Y/R/B/O |
NT_024192 | AC109810 | 44752244 | 2 | chr11 | NT_024192 | AC024295 | 44780160 | 3 | 156149 | 0 | 0 | 156149 |
| S/G/Y/R/B/O |
NT_024192 | AC109810 | 44752244 | 2 | chr11 | NT_024192 | AC009643 | 44937254 | 3 | 33028 | 1752 | 0 | 34780 |
| S/G/Y/R/B/O |
NT_024192 | AC024295 | 44780160 | 3 | chr11 | NT_024192 | AC009643 | 44937254 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024192 | AC009643 | 44937254 | 3 | chr11 | NT_024192 | AC025737 | 45101683 | 1 | 59183 | 0 | 10500 | 69683 |
| S/G/Y/R/B/O |
NT_024192 | AC009643 | 44937254 | 3 | chr11 | NT_024192 | AC090588 | 45184009 | 2 | 68018 | 0 | 0 | 68018 |
| S/G/Y/R/B/O |
NT_024192 | AC009643 | 44937254 | 3 | chr11 | NT_024192 | AC109810 | 44752244 | 2 | 33028 | 1752 | 0 | 34780 |
| S/G/Y/R/B/O |
NT_024192 | AC025737 | 45101683 | 1 | chr11 | NT_024192 | AC090588 | 45184009 | 2 | 85825 | 2670 | 10494 | 98989 |
| S/G/Y/R/B/O |
NT_024192 | AC090588 | 45184009 | 2 | chr11 | NT_024192 | AC087276 | 45184015 | 1 | 8286 | 0 | 0 | 8286 |
| S/G/Y/R/B/O |
NT_024192 | AC090588 | 45184009 | 2 | chr11 | NT_024192 | AC009643 | 44937254 | 3 | 68018 | 0 | 0 | 68018 |
| S/G/Y/R/B/O |
NT_024192 | AC087276 | 45184015 | 1 | chr11 | NT_024192 | AC025552 | 45193002 | 1 | 168858 | 6472 | 18877 | 194207 |
| S/G/Y/R/B/O |
NT_024192 | AC087276 | 45184015 | 1 | chr11 | NT_024192 | AC023085 | 45318775 | 2 | 61146 | 0 | 0 | 61146 |
| S/G/Y/R/B/O |
NT_024192 | AC025552 | 45193002 | 1 | chr11 | NT_024192 | AC023085 | 45318775 | 2 | 48305 | 6468 | 0 | 54773 |
| S/G/Y/R/B/O |
NT_024192 | AC023085 | 45318775 | 2 | chr11 | NT_024192 | AC068205 | 45479087 | 1 | 14770 | 0 | 5927 | 20697 |
| S/G/Y/R/B/O |
NT_024192 | AC023085 | 45318775 | 2 | chr11 | NT_024192 | AC087276 | 45184015 | 1 | 61146 | 0 | 0 | 61146 |
| S/G/Y/R/B/O |
NT_024192 | AC068205 | 45479087 | 1 |   |   |   |   |   |   |   |   |   |
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