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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030800 | AC018368 | 131036423 | 1 | chr11 | NT_030800 | AP000912 | 131040268 | 1 | 31939 | 4164 | 0 | 36103 |
| S/G/Y/R/B/O |
NT_030800 | AC018368 | 131036423 | 1 | chr11 | NT_030800 | AP000832 | 131041791 | 1 | 18099 | 2252 | 2999 | 23350 |
| S/G/Y/R/B/O |
NT_030800 | AC018368 | 131036423 | 1 | chr11 | NT_030800 | AP000843 | 131271200 | 3 | 28961 | 0 | 0 | 28961 |
| S/G/Y/R/B/O |
NT_030800 | AC018368 | 131036423 | 1 | chr11 | NT_030800 | AP004248 | 131080129 | 3 | 143695 | 0 | 10940 | 154635 |
| S/G/Y/R/B/O |
NT_030800 | AP000912 | 131040268 | 1 | chr11 | NT_030800 | AP000832 | 131041791 | 1 | 62704 | 0 | 9489 | 72193 |
| S/G/Y/R/B/O |
NT_030800 | AP000912 | 131040268 | 1 | chr11 | NT_030800 | AP000843 | 131271200 | 3 | 134471 | 11613 | 12081 | 158165 |
| S/G/Y/R/B/O |
NT_030800 | AP000912 | 131040268 | 1 | chr11 | NT_030800 | AP003029 | 131457873 | 3 | 43103 | 2703 | 838 | 46644 |
| S/G/Y/R/B/O |
NT_030800 | AP000832 | 131041791 | 1 | chr11 | NT_030800 | AC027631 | 131062858 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030800 | AP000832 | 131041791 | 1 | chr11 | NT_030800 | AC018368 | 131036423 | 1 | 18099 | 2252 | 2999 | 23350 |
| S/G/Y/R/B/O |
NT_030800 | AP000832 | 131041791 | 1 | chr11 | NT_030800 | AP000843 | 131271200 | 3 | 136317 | 6051 | 19465 | 161833 |
| S/G/Y/R/B/O |
NT_030800 | AP000832 | 131041791 | 1 | chr11 | NT_030800 | AP003029 | 131457873 | 3 | 38060 | 3791 | 3045 | 44896 |
| S/G/Y/R/B/O |
NT_030800 | AP000832 | 131041791 | 1 | chr11 | NT_030800 | AP004248 | 131080129 | 3 | 13089 | 0 | 0 | 13089 |
| S/G/Y/R/B/O |
NT_030800 | AC027631 | 131062858 | 1 | chr11 | NT_030800 | AP004721 | 131069177 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030800 | AC027631 | 131062858 | 1 | chr11 | NT_030800 | AC090284 | 131781476 | 3 | 67854 | 0 | 19752 | 87606 |
| S/G/Y/R/B/O |
NT_030800 | AC027631 | 131062858 | 1 |   |   | AC084739 | 131080129 | 1 | 28507 | 1412 | 19871 | 49790 |
| S/G/Y/R/B/O |
NT_030800 | AP004721 | 131069177 | 1 | chr11 | NT_030800 | AP004248 | 131080129 | 3 | 30964 | 0 | 0 | 30964 |
| S/G/Y/R/B/O |
NT_030800 | AP004248 | 131080129 | 3 | chr11 | NT_030800 | AP000843 | 131271200 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030800 | AP004248 | 131080129 | 3 | chr11 | NT_030800 | AC018368 | 131036423 | 1 | 143695 | 0 | 10940 | 154635 |
| S/G/Y/R/B/O |
NT_030800 | AP004248 | 131080129 | 3 | chr11 | NT_030800 | AP000832 | 131041791 | 1 | 13089 | 0 | 0 | 13089 |
| S/G/Y/R/B/O |
NT_030800 | AP000843 | 131271200 | 3 | chr11 | NT_030800 | AP003029 | 131457873 | 3 | 61781 | 0 | 0 | 61781 |
| S/G/Y/R/B/O |
NT_030800 | AP000843 | 131271200 | 3 | chr11 | NT_030800 | AC018368 | 131036423 | 1 | 28961 | 0 | 0 | 28961 |
| S/G/Y/R/B/O |
NT_030800 | AP000843 | 131271200 | 3 | chr11 | NT_030800 | AP000832 | 131041791 | 1 | 136317 | 6051 | 19465 | 161833 |
| S/G/Y/R/B/O |
NT_030800 | AP000843 | 131271200 | 3 | chr11 | NT_030800 | AP000912 | 131040268 | 1 | 134471 | 11613 | 12081 | 158165 |
| S/G/Y/R/B/O |
NT_030800 | AP003029 | 131457873 | 3 | chr11 | NT_030800 | AP000863 | 131538843 | 3 | 8298 | 0 | 0 | 8298 |
| S/G/Y/R/B/O |
NT_030800 | AP003029 | 131457873 | 3 | chr11 | NT_030800 | AP000832 | 131041791 | 1 | 38060 | 3791 | 3045 | 44896 |
| S/G/Y/R/B/O |
NT_030800 | AP003029 | 131457873 | 3 | chr11 | NT_030800 | AP000912 | 131040268 | 1 | 43103 | 2703 | 838 | 46644 |
| S/G/Y/R/B/O |
NT_030800 | AP003029 | 131457873 | 3 |   |   | AC012234 | 131457873 | 1 | 16918 | 0 | 1041 | 17959 |
| S/G/Y/R/B/O |
NT_030800 | AP000863 | 131538843 | 3 | chr11 | NT_030800 | AP003784 | 131653865 | 3 | 25887 | 0 | 0 | 25887 |
| S/G/Y/R/B/O |
NT_030800 | AP000863 | 131538843 | 3 |   |   | AC012234 | 131040268 | 1 | 109931 | 1838 | 4901 | 116670 |
| S/G/Y/R/B/O |
NT_030800 | AP000863 | 131538843 | 3 |   |   | AP000784 | 131040268 | 1 | 82166 | 0 | 547 | 82713 |
| S/G/Y/R/B/O |
NT_030800 | AP000863 | 131538843 | 3 |   |   | AP002808 | 131040268 | 1 | 100583 | 0 | 1474 | 102057 |
| S/G/Y/R/B/O |
NT_030800 | AP003784 | 131653865 | 3 | chr11 | NT_030800 | AC090284 | 131781476 | 3 | 85513 | 0 | 0 | 85513 |
| S/G/Y/R/B/O |
NT_030800 | AP003784 | 131653865 | 3 |   |   | AC012234 | 131653865 | 1 | 55105 | 0 | 3568 | 58673 |
| S/G/Y/R/B/O |
NT_030800 | AP003784 | 131653865 | 3 |   |   | AC084739 | 131062858 | 1 | 68092 | 0 | 1757 | 69849 |
| S/G/Y/R/B/O |
NT_030800 | AP003784 | 131653865 | 3 |   |   | AP000784 | 131781476 | 1 | 24217 | 0 | 0 | 24217 |
| S/G/Y/R/B/O |
NT_030800 | AP003784 | 131653865 | 3 |   |   | AP002808 | 131538843 | 1 | 65049 | 2698 | 0 | 67747 |
| S/G/Y/R/B/O |
NT_030800 | AC090284 | 131781476 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030800 | AC090284 | 131781476 | 3 | chr11 | NT_030800 | AC027631 | 131062858 | 1 | 67854 | 0 | 19752 | 87606 |
| S/G/Y/R/B/O |
NT_030800 | AC090284 | 131781476 | 3 |   |   | AC084739 | 131062858 | 1 | 143097 | 0 | 11462 | 154559 |
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