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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_009038 | AC016887 | 15210660 | 1 | chr11 | NT_009038 | AC104016 | 15231443 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009038 | AC016887 | 15210660 | 1 | chr11 | NT_009038 | AC009869 | 15559952 | 2 | 57411 | 0 | 516 | 57927 |
| S/G/Y/R/B/O |
NT_009038 | AC016887 | 15210660 | 1 | chr11 | NT_009038 | AC023345 | 15450774 | 1 | 70137 | 3900 | 0 | 74037 |
| S/G/Y/R/B/O |
NT_009038 | AC016887 | 15210660 | 1 | chr11 | NT_009038 | AC078869 | 15456645 | 1 | 53115 | 0 | 31126 | 84241 |
| S/G/Y/R/B/O |
NT_009038 | AC016887 | 15210660 | 1 | chr11 | NT_009038 | AC087379 | 15437493 | 2 | 85042 | 0 | 3001 | 88043 |
| S/G/Y/R/B/O |
NT_009038 | AC016887 | 15210660 | 1 |   |   | AC013635 | 15559952 | 2 | 38545 | 0 | 516 | 39061 |
| S/G/Y/R/B/O |
NT_009038 | AC104016 | 15231443 | 2 | chr11 | NT_009038 | AC073172 | 15269413 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_009038 | AC104016 | 15231443 | 2 | chr11 | NT_009038 | AC027016 | 16069473 | 3 | 41104 | 0 | 0 | 41104 |
| S/G/Y/R/B/O |
NT_009038 | AC073172 | 15269413 | 2 | chr11 | NT_009038 | AC087379 | 15437493 | 2 | 77235 | 0 | 0 | 77235 |
| S/G/Y/R/B/O |
NT_009038 | AC073172 | 15269413 | 2 | chr11 | NT_009038 | AC023345 | 15450774 | 1 | 67577 | 4559 | 0 | 72136 |
| S/G/Y/R/B/O |
NT_009038 | AC087379 | 15437493 | 2 | chr11 | NT_009038 | AC023345 | 15450774 | 1 | 157509 | 8450 | 11490 | 177449 |
| S/G/Y/R/B/O |
NT_009038 | AC087379 | 15437493 | 2 | chr11 | NT_009038 | AC016887 | 15210660 | 1 | 85042 | 0 | 3001 | 88043 |
| S/G/Y/R/B/O |
NT_009038 | AC087379 | 15437493 | 2 | chr11 | NT_009038 | AC078869 | 15456645 | 1 | 69781 | 0 | 0 | 69781 |
| S/G/Y/R/B/O |
NT_009038 | AC023345 | 15450774 | 1 | chr11 | NT_009038 | AC078869 | 15456645 | 1 | 52878 | 2153 | 26237 | 81268 |
| S/G/Y/R/B/O |
NT_009038 | AC023345 | 15450774 | 1 | chr11 | NT_009038 | AC016887 | 15210660 | 1 | 70137 | 3900 | 0 | 74037 |
| S/G/Y/R/B/O |
NT_009038 | AC023345 | 15450774 | 1 | chr11 | NT_009038 | AC073172 | 15269413 | 2 | 67577 | 4559 | 0 | 72136 |
| S/G/Y/R/B/O |
NT_009038 | AC078869 | 15456645 | 1 | chr11 | NT_009038 | AC009869 | 15559952 | 2 | 45685 | 0 | 5023 | 50708 |
| S/G/Y/R/B/O |
NT_009038 | AC078869 | 15456645 | 1 | chr11 | NT_009038 | AC016887 | 15210660 | 1 | 53115 | 0 | 31126 | 84241 |
| S/G/Y/R/B/O |
NT_009038 | AC078869 | 15456645 | 1 | chr11 | NT_009038 | AC087379 | 15437493 | 2 | 69781 | 0 | 0 | 69781 |
| S/G/Y/R/B/O |
NT_009038 | AC078869 | 15456645 | 1 |   |   | AC013635 | 15559952 | 2 | 21646 | 0 | 5022 | 26668 |
| S/G/Y/R/B/O |
NT_009038 | AC078869 | 15456645 | 1 |   |   | AC021770 | 15210660 | 1 | 26713 | 0 | 0 | 26713 |
| S/G/Y/R/B/O |
NT_009038 | AC009869 | 15559952 | 2 | chr11 | NT_009038 | AC079965 | 15701664 | 2 | 50981 | 0 | 0 | 50981 |
| S/G/Y/R/B/O |
NT_009038 | AC009869 | 15559952 | 2 | chr11 | NT_009038 | AC016887 | 15210660 | 1 | 57411 | 0 | 516 | 57927 |
| S/G/Y/R/B/O |
NT_009038 | AC009869 | 15559952 | 2 |   |   | AC013635 | 33377102 | 2 | 161629 | 0 | 0 | 161629 |
| S/G/Y/R/B/O |
NT_009038 | AC009869 | 15559952 | 2 |   |   | AC021770 | 15210660 | 1 | 146974 | 1660 | 1412 | 150046 |
| S/G/Y/R/B/O |
NT_009038 | AC079965 | 15701664 | 2 | chr11 | NT_009038 | AC103794 | 15750490 | 3 | 98448 | 0 | 0 | 98448 |
| S/G/Y/R/B/O |
NT_009038 | AC079965 | 15701664 | 2 |   |   | AC019298 | 7216592 | 1 | 21597 | 4300 | 0 | 25897 |
| S/G/Y/R/B/O |
NT_009038 | AC079965 | 15701664 | 2 |   |   | AC021770 | 7216592 | 1 | 12692 | 0 | 0 | 12692 |
| S/G/Y/R/B/O |
NT_009038 | AC103794 | 15750490 | 3 | chr11 | NT_009038 | AC025623 | 15961935 | 3 | 134533 | 0 | 0 | 134533 |
| S/G/Y/R/B/O |
NT_009038 | AC103794 | 15750490 | 3 | chr11 | NT_009038 | AC068405 | 15978607 | 3 | 49116 | 0 | 0 | 49116 |
| S/G/Y/R/B/O |
NT_009038 | AC103794 | 15750490 | 3 |   |   | AC019298 | 15750490 | 1 | 116766 | 8391 | 1103 | 126260 |
| S/G/Y/R/B/O |
NT_009038 | AC025623 | 15961935 | 3 | chr11 | NT_009038 | AC068405 | 15978607 | 3 | 65847 | 0 | 0 | 65847 |
| S/G/Y/R/B/O |
NT_009038 | AC025623 | 15961935 | 3 |   |   | AC019298 | 15701664 | 1 | 109780 | 10631 | 1103 | 121514 |
| S/G/Y/R/B/O |
NT_009038 | AC068405 | 15978607 | 3 | chr11 | NT_009038 | AC012429 | 16061622 | 1 | 72083 | 0 | 0 | 72083 |
| S/G/Y/R/B/O |
NT_009038 | AC068405 | 15978607 | 3 | chr11 | NT_009038 | AC013595 | 16255624 | 1 | 88808 | 0 | 0 | 88808 |
| S/G/Y/R/B/O |
NT_009038 | AC068405 | 15978607 | 3 | chr11 | NT_009038 | AC103794 | 15750490 | 3 | 49116 | 0 | 0 | 49116 |
| S/G/Y/R/B/O |
NT_009038 | AC068405 | 15978607 | 3 |   |   | AC019298 | 16255624 | 1 | 45039 | 3739 | 0 | 48778 |
| S/G/Y/R/B/O |
NT_009038 | AC012429 | 16061622 | 1 | chr11 | NT_009038 | AC027016 | 16069473 | 3 | 72776 | 0 | 0 | 72776 |
| S/G/Y/R/B/O |
NT_009038 | AC012429 | 16061622 | 1 | chr11 | NT_009038 | AC013595 | 16255624 | 1 | 92477 | 0 | 0 | 92477 |
| S/G/Y/R/B/O |
NT_009038 | AC027016 | 16069473 | 3 | chr11 | NT_009038 | AC013595 | 16255624 | 1 | 82029 | 0 | 0 | 82029 |
| S/G/Y/R/B/O |
NT_009038 | AC027016 | 16069473 | 3 | chr11 | NT_009038 | AC104016 | 15231443 | 2 | 41104 | 0 | 0 | 41104 |
| S/G/Y/R/B/O |
NT_009038 | AC013595 | 16255624 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_009038 | AC013595 | 16255624 | 1 | chr11 | NT_009038 | AC012429 | 16061622 | 1 | 92477 | 0 | 0 | 92477 |
| S/G/Y/R/B/O |
NT_009038 | AC013595 | 16255624 | 1 | chr11 | NT_009038 | AC068405 | 15978607 | 3 | 88808 | 0 | 0 | 88808 |
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