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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033900 | AC019124 | 67007410 | 1 | chr11 | NT_033900 | AP003071 | 67008934 | 1 | 68196 | 13734 | 34350 | 116280 |
| S/G/Y/R/B/O |
NT_033900 | AC019124 | 67007410 | 1 | chr11 | NT_033900 | AP003779 | 68501404 | 1 | 60996 | 10821 | 31095 | 102912 |
| S/G/Y/R/B/O |
NT_033900 | AP003071 | 67008934 | 1 | chr11 | NT_033900 | AP002992 | 67010986 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AP003071 | 67008934 | 1 | chr11 | NT_033900 | AP003779 | 68501404 | 1 | 111329 | 11133 | 1706 | 124168 |
| S/G/Y/R/B/O |
NT_033900 | AP002992 | 67010986 | 1 | chr11 | NT_033900 | AP000808 | 67016628 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AP002992 | 67010986 | 1 | chr11 | NT_033900 | AP002807 | 67558076 | 3 | 19273 | 0 | 0 | 19273 |
| S/G/Y/R/B/O |
NT_033900 | AP002992 | 67010986 | 1 | chr11 | NT_033900 | AP002813 | 67662640 | 3 | 44626 | 11682 | 12406 | 68714 |
| S/G/Y/R/B/O |
NT_033900 | AP002992 | 67010986 | 1 |   |   | AC024127 | 68501404 | 2 | 51884 | 11631 | 10263 | 73778 |
| S/G/Y/R/B/O |
NT_033900 | AP000808 | 67016628 | 1 | chr11 | NT_033900 | AP000668 | 67043801 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AP000808 | 67016628 | 1 | chr11 | NT_033900 | AC019166 | 68297175 | 1 | 50270 | 2143 | 8723 | 61136 |
| S/G/Y/R/B/O |
NT_033900 | AP000808 | 67016628 | 1 | chr11 | NT_033900 | AP000444 | 68365654 | 1 | 44276 | 17222 | 8718 | 70216 |
| S/G/Y/R/B/O |
NT_033900 | AP000808 | 67016628 | 1 | chr11 | NT_033900 | AP003732 | 68297243 | 1 | 47571 | 14493 | 1142 | 63206 |
| S/G/Y/R/B/O |
NT_033900 | AP000668 | 67043801 | 1 | chr11 | NT_033900 | AP001184 | 67049473 | 1 | 51792 | 9713 | 24360 | 85865 |
| S/G/Y/R/B/O |
NT_033900 | AP000668 | 67043801 | 1 | chr11 | NT_033900 | AC021987 | 67050908 | 1 | 27348 | 4495 | 16504 | 48347 |
| S/G/Y/R/B/O |
NT_033900 | AP001184 | 67049473 | 1 | chr11 | NT_033900 | AC021987 | 67050908 | 1 | 90644 | 7453 | 17995 | 116092 |
| S/G/Y/R/B/O |
NT_033900 | AP001184 | 67049473 | 1 | chr11 | NT_033900 | AP003385 | 67082082 | 1 | 25781 | 1273 | 19125 | 46179 |
| S/G/Y/R/B/O |
NT_033900 | AC021987 | 67050908 | 1 | chr11 | NT_033900 | AP003385 | 67082082 | 1 | 46587 | 2229 | 21499 | 70315 |
| S/G/Y/R/B/O |
NT_033900 | AC021987 | 67050908 | 1 | chr11 | NT_033900 | AP000668 | 67043801 | 1 | 27348 | 4495 | 16504 | 48347 |
| S/G/Y/R/B/O |
NT_033900 | AP003385 | 67082082 | 1 | chr11 | NT_033900 | AP003716 | 67285344 | 3 | 16085 | 2099 | 0 | 18184 |
| S/G/Y/R/B/O |
NT_033900 | AP003385 | 67082082 | 1 | chr11 | NT_033900 | AP001184 | 67049473 | 1 | 25781 | 1273 | 19125 | 46179 |
| S/G/Y/R/B/O |
NT_033900 | AP003716 | 67285344 | 3 | chr11 | NT_033900 | AC004924 | 67450532 | 3 | 79059 | 0 | 0 | 79059 |
| S/G/Y/R/B/O |
NT_033900 | AP003716 | 67285344 | 3 | chr11 | NT_033900 | AC034259 | 67620993 | 1 | 28401 | 104 | 0 | 28505 |
| S/G/Y/R/B/O |
NT_033900 | AC004924 | 67450532 | 3 | chr11 | NT_033900 | AC004923 | 67463425 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AC004924 | 67450532 | 3 | chr11 | NT_033900 | AC034259 | 67620993 | 1 | 36096 | 13093 | 2254 | 51443 |
| S/G/Y/R/B/O |
NT_033900 | AC004923 | 67463425 | 3 | chr11 | NT_033900 | AP002807 | 67558076 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AC004923 | 67463425 | 3 | chr11 | NT_033900 | AC034259 | 67620993 | 1 | 75013 | 3828 | 5021 | 83862 |
| S/G/Y/R/B/O |
NT_033900 | AP002807 | 67558076 | 3 | chr11 | NT_033900 | AC034259 | 67620993 | 1 | 33735 | 7758 | 4549 | 46042 |
| S/G/Y/R/B/O |
NT_033900 | AP002807 | 67558076 | 3 | chr11 | NT_033900 | AP002992 | 67010986 | 1 | 19273 | 0 | 0 | 19273 |
| S/G/Y/R/B/O |
NT_033900 | AP002807 | 67558076 | 3 |   |   | AF033033 | 67620993 | 3 | 12226 | 0 | 0 | 12226 |
| S/G/Y/R/B/O |
NT_033900 | AC034259 | 67620993 | 1 | chr11 | NT_033900 | AP002813 | 67662640 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AC034259 | 67620993 | 1 | chr11 | NT_033900 | AC004923 | 67463425 | 3 | 75013 | 3828 | 5021 | 83862 |
| S/G/Y/R/B/O |
NT_033900 | AC034259 | 67620993 | 1 | chr11 | NT_033900 | AC004924 | 67450532 | 3 | 36096 | 13093 | 2254 | 51443 |
| S/G/Y/R/B/O |
NT_033900 | AC034259 | 67620993 | 1 | chr11 | NT_033900 | AP003716 | 67285344 | 3 | 28401 | 104 | 0 | 28505 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 | chr11 | NT_033900 | AF283320 | 67816758 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 | chr11 | NT_033900 | AP002992 | 67010986 | 1 | 44626 | 11682 | 12406 | 68714 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 |   |   | AC024124 | 67285344 | 2 | 19593 | 0 | 1464 | 21057 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 |   |   | AC024125 | 67285344 | 1 | 17476 | 5451 | 2942 | 25869 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 |   |   | AC024127 | 67285344 | 2 | 74193 | 5436 | 0 | 79629 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 |   |   | AC051652 | 67285344 | 1 | 23178 | 12316 | 5443 | 40937 |
| S/G/Y/R/B/O |
NT_033900 | AP002813 | 67662640 | 3 |   |   | AP002366 | 67285344 | 1 | 22854 | 4065 | 3872 | 30791 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 | chr11 | NT_033900 | AP000807 | 67938913 | 1 | 69385 | 2253 | 0 | 71638 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 |   |   | AC024123 | 67010986 | 2 | 78539 | 0 | 0 | 78539 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 |   |   | AC024124 | 67010986 | 2 | 41031 | 0 | 1468 | 42499 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 |   |   | AC024125 | 67010986 | 1 | 10361 | 3967 | 2019 | 16347 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 |   |   | AC024126 | 67010986 | 2 | 30373 | 0 | 0 | 30373 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 |   |   | AC051652 | 67010986 | 1 | 97892 | 4639 | 5410 | 107941 |
| S/G/Y/R/B/O |
NT_033900 | AF283320 | 67816758 | 3 |   |   | AP002366 | 67938938 | 1 | 78136 | 2003 | 27892 | 108031 |
| S/G/Y/R/B/O |
NT_033900 | AP000807 | 67938913 | 1 | chr11 | NT_033900 | AP001075 | 67938938 | 1 | 47194 | 11374 | 18156 | 76724 |
| S/G/Y/R/B/O |
NT_033900 | AP000807 | 67938913 | 1 | chr11 | NT_033900 | AF283321 | 67951230 | 3 | 21040 | 1815 | 18428 | 41283 |
| S/G/Y/R/B/O |
NT_033900 | AP000807 | 67938913 | 1 |   |   | AC024123 | 67938938 | 2 | 74221 | 6303 | 11387 | 91911 |
| S/G/Y/R/B/O |
NT_033900 | AP000807 | 67938913 | 1 |   |   | AC024126 | 67938938 | 2 | 16030 | 0 | 0 | 16030 |
| S/G/Y/R/B/O |
NT_033900 | AP000807 | 67938913 | 1 |   |   | AC051652 | 67938938 | 1 | 26523 | 0 | 2295 | 28818 |
| S/G/Y/R/B/O |
NT_033900 | AP000807 | 67938913 | 1 |   |   | AP002366 | 68057509 | 1 | 65551 | 11030 | 18469 | 95050 |
| S/G/Y/R/B/O |
NT_033900 | AP001075 | 67938938 | 1 | chr11 | NT_033900 | AF283321 | 67951230 | 3 | 15338 | 13335 | 7872 | 36545 |
| S/G/Y/R/B/O |
NT_033900 | AP001075 | 67938938 | 1 | chr11 | NT_033900 | AP001788 | 68057509 | 3 | 38465 | 0 | 1417 | 39882 |
| S/G/Y/R/B/O |
NT_033900 | AP001075 | 67938938 | 1 |   |   | AC024123 | 68057509 | 2 | 12021 | 12506 | 6114 | 30641 |
| S/G/Y/R/B/O |
NT_033900 | AP001075 | 67938938 | 1 |   |   | AP002366 | 68057509 | 1 | 25914 | 11316 | 4751 | 41981 |
| S/G/Y/R/B/O |
NT_033900 | AF283321 | 67951230 | 3 | chr11 | NT_033900 | AP001788 | 68057509 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AF283321 | 67951230 | 3 | chr11 | NT_033900 | AP000807 | 67938913 | 1 | 21040 | 1815 | 18428 | 41283 |
| S/G/Y/R/B/O |
NT_033900 | AF283321 | 67951230 | 3 |   |   | AC024123 | 68057509 | 2 | 58554 | 0 | 0 | 58554 |
| S/G/Y/R/B/O |
NT_033900 | AF283321 | 67951230 | 3 |   |   | AP002366 | 67938938 | 1 | 31266 | 10488 | 1913 | 43667 |
| S/G/Y/R/B/O |
NT_033900 | AP001788 | 68057509 | 3 | chr11 | NT_033900 | AP003096 | 68245759 | 3 | 123006 | 0 | 0 | 123006 |
| S/G/Y/R/B/O |
NT_033900 | AP001788 | 68057509 | 3 | chr11 | NT_033900 | AP001075 | 67938938 | 1 | 38465 | 0 | 1417 | 39882 |
| S/G/Y/R/B/O |
NT_033900 | AP001788 | 68057509 | 3 |   |   | AC026872 | 67938938 | 1 | 13056 | 0 | 0 | 13056 |
| S/G/Y/R/B/O |
NT_033900 | AP003096 | 68245759 | 3 | chr11 | NT_033900 | AC019166 | 68297175 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AP003096 | 68245759 | 3 |   |   | AC026872 | 68245759 | 1 | 17113 | 1510 | 0 | 18623 |
| S/G/Y/R/B/O |
NT_033900 | AC019166 | 68297175 | 1 | chr11 | NT_033900 | AP003732 | 68297243 | 1 | 88849 | 18388 | 15612 | 122849 |
| S/G/Y/R/B/O |
NT_033900 | AC019166 | 68297175 | 1 | chr11 | NT_033900 | AP000444 | 68365654 | 1 | 31355 | 13238 | 19845 | 64438 |
| S/G/Y/R/B/O |
NT_033900 | AC019166 | 68297175 | 1 | chr11 | NT_033900 | AP000808 | 67016628 | 1 | 50270 | 2143 | 8723 | 61136 |
| S/G/Y/R/B/O |
NT_033900 | AP003732 | 68297243 | 1 | chr11 | NT_033900 | AP000444 | 68365654 | 1 | 34078 | 21045 | 15495 | 70618 |
| S/G/Y/R/B/O |
NT_033900 | AP003732 | 68297243 | 1 | chr11 | NT_033900 | AP000808 | 67016628 | 1 | 47571 | 14493 | 1142 | 63206 |
| S/G/Y/R/B/O |
NT_033900 | AP000444 | 68365654 | 1 | chr11 | NT_033900 | AP003779 | 68501404 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033900 | AP000444 | 68365654 | 1 | chr11 | NT_033900 | AC019166 | 68297175 | 1 | 31355 | 13238 | 19845 | 64438 |
| S/G/Y/R/B/O |
NT_033900 | AP000444 | 68365654 | 1 | chr11 | NT_033900 | AP000808 | 67016628 | 1 | 44276 | 17222 | 8718 | 70216 |
| S/G/Y/R/B/O |
NT_033900 | AP003779 | 68501404 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033900 | AP003779 | 68501404 | 1 | chr11 | NT_033900 | AC019124 | 67007410 | 1 | 60996 | 10821 | 31095 | 102912 |
| S/G/Y/R/B/O |
NT_033900 | AP003779 | 68501404 | 1 | chr11 | NT_033900 | AP003071 | 67008934 | 1 | 111329 | 11133 | 1706 | 124168 |
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