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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033913 | AP003108 | 60377080 | 1 | 60963 | 16982 | 15708 | 93653 |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033913 | AC006409 | 60451585 | 3 | 17067 | 0 | 4998 | 22065 |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033913 | AC064808 | 60445912 | 1 | 44008 | 2279 | 7823 | 54110 |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033913 | AC090584 | 60384282 | 1 | 104309 | 5269 | 23058 | 132636 |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033913 | AP001809 | 60616812 | 1 | 39609 | 7453 | 47633 | 94695 |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033903 | AP003037 | 60243160 | 1 | 10009 | 0 | 0 | 10009 |
| S/G/Y/R/B/O |
NT_033913 | AC019071 | 60373105 | 1 | chr11 | NT_033913 | AP003559 | 60448073 | 1 | 68046 | 9344 | 2206 | 79596 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 | chr11 | NT_033913 | AC090584 | 60384282 | 1 | 104518 | 16028 | 7656 | 128202 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 | chr11 | NT_033913 | AC006409 | 60451585 | 3 | 12257 | 0 | 0 | 12257 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 | chr11 | NT_033913 | AC064808 | 60445912 | 1 | 58840 | 8659 | 2574 | 70073 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 | chr11 | NT_033913 | AP001809 | 60616812 | 1 | 83404 | 7613 | 6546 | 97563 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 | chr11 | NT_033903 | AP003037 | 60243160 | 1 | 12504 | 0 | 0 | 12504 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 | chr11 | NT_033913 | AP003559 | 60448073 | 1 | 59182 | 6238 | 8654 | 74074 |
| S/G/Y/R/B/O |
NT_033913 | AP003108 | 60377080 | 1 |   |   | U65744 | 60448073 | 3 | 15192 | 0 | 0 | 15192 |
| S/G/Y/R/B/O |
NT_033913 | AC090584 | 60384282 | 1 | chr11 | NT_033913 | AC064808 | 60445912 | 1 | 108730 | 2555 | 1186 | 112471 |
| S/G/Y/R/B/O |
NT_033913 | AC090584 | 60384282 | 1 | chr11 | NT_033913 | AC006409 | 60451585 | 3 | 20992 | 0 | 1185 | 22177 |
| S/G/Y/R/B/O |
NT_033913 | AC090584 | 60384282 | 1 | chr11 | NT_033913 | AC019071 | 60373105 | 1 | 104309 | 5269 | 23058 | 132636 |
| S/G/Y/R/B/O |
NT_033913 | AC090584 | 60384282 | 1 | chr11 | NT_033913 | AP001809 | 60616812 | 1 | 132753 | 6608 | 22987 | 162348 |
| S/G/Y/R/B/O |
NT_033913 | AC090584 | 60384282 | 1 | chr11 | NT_033903 | AP003037 | 60243160 | 1 | 13748 | 0 | 0 | 13748 |
| S/G/Y/R/B/O |
NT_033913 | AC090584 | 60384282 | 1 | chr11 | NT_033913 | AP003559 | 60448073 | 1 | 98894 | 7450 | 2207 | 108551 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_033913 | AP003559 | 60448073 | 1 | 83660 | 3692 | 4651 | 92003 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_033913 | AC006409 | 60451585 | 3 | 78798 | 1935 | 9204 | 89937 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_033913 | AC019071 | 60373105 | 1 | 44008 | 2279 | 7823 | 54110 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_030106 | AC087848 | 64435981 | 1 | 17939 | 0 | 0 | 17939 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_033913 | AP001809 | 60616812 | 1 | 97384 | 5730 | 5868 | 108982 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_030106 | AP002754 | 64250215 | 3 | 23456 | 1935 | 0 | 25391 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 | chr11 | NT_033913 | AP003108 | 60377080 | 1 | 58840 | 8659 | 2574 | 70073 |
| S/G/Y/R/B/O |
NT_033913 | AC064808 | 60445912 | 1 |   |   | U65744 | 60448073 | 3 | 13458 | 0 | 0 | 13458 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_033913 | AC006409 | 60451585 | 3 | 45398 | 0 | 0 | 45398 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_033913 | AC019071 | 60373105 | 1 | 68046 | 9344 | 2206 | 79596 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_030106 | AC025689 | 64449002 | 1 | 12563 | 0 | 3380 | 15943 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_030106 | AC087848 | 64435981 | 1 | 19078 | 0 | 0 | 19078 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_033913 | AC090584 | 60384282 | 1 | 98894 | 7450 | 2207 | 108551 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_033913 | AP001809 | 60616812 | 1 | 93182 | 9902 | 2207 | 105291 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 | chr11 | NT_033913 | AP003108 | 60377080 | 1 | 59182 | 6238 | 8654 | 74074 |
| S/G/Y/R/B/O |
NT_033913 | AP003559 | 60448073 | 1 |   |   | U65744 | 60377080 | 3 | 22241 | 0 | 0 | 22241 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_033913 | AP001809 | 60616812 | 1 | 27825 | 2863 | 0 | 30688 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_033913 | AC019071 | 60373105 | 1 | 17067 | 0 | 4998 | 22065 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_030106 | AC025689 | 64449002 | 1 | 16440 | 4984 | 40783 | 62207 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_033913 | AC064808 | 60445912 | 1 | 78798 | 1935 | 9204 | 89937 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_030106 | AC087848 | 64435981 | 1 | 65864 | 0 | 0 | 65864 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_033913 | AC090584 | 60384282 | 1 | 20992 | 0 | 1185 | 22177 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 | chr11 | NT_033913 | AP003108 | 60377080 | 1 | 12257 | 0 | 0 | 12257 |
| S/G/Y/R/B/O |
NT_033913 | AC006409 | 60451585 | 3 |   |   | U65744 | 60448073 | 3 | 40051 | 0 | 0 | 40051 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 | chr11 | NT_033913 | AC019071 | 60373105 | 1 | 39609 | 7453 | 47633 | 94695 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 | chr11 | NT_030106 | AC025689 | 64449002 | 1 | 12506 | 0 | 0 | 12506 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 | chr11 | NT_033913 | AC064808 | 60445912 | 1 | 97384 | 5730 | 5868 | 108982 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 | chr11 | NT_033913 | AC090584 | 60384282 | 1 | 132753 | 6608 | 22987 | 162348 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 | chr11 | NT_033913 | AP003108 | 60377080 | 1 | 83404 | 7613 | 6546 | 97563 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 | chr11 | NT_033913 | AP003559 | 60448073 | 1 | 93182 | 9902 | 2207 | 105291 |
| S/G/Y/R/B/O |
NT_033913 | AP001809 | 60616812 | 1 |   |   | U65744 | 60448073 | 3 | 13912 | 5830 | 5876 | 25618 |
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