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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011091 | AC008655 | 64225359 | 3 | chr19 | NT_011091 | AC020909 | 64348508 | 2 | 10152 | 0 | 0 | 10152 |
| S/G/Y/R/B/O |
NT_011091 | AC008655 | 64225359 | 3 | chr19 | NT_033316 | AC019157 | 64095099 | 1 | 32756 | 1783 | 14349 | 48888 |
| S/G/Y/R/B/O |
NT_011091 | AC020909 | 64348508 | 2 | chr19 | NT_011091 | AC073646 | 64438435 | 1 | 51751 | 0 | 41050 | 92801 |
| S/G/Y/R/B/O |
NT_011091 | AC020909 | 64348508 | 2 | chr19 | NT_011091 | AC008743 | 64504301 | 3 | 57661 | 0 | 0 | 57661 |
| S/G/Y/R/B/O |
NT_011091 | AC073646 | 64438435 | 1 | chr19 | NT_011091 | AC008743 | 64504301 | 3 | 12538 | 0 | 15005 | 27543 |
| S/G/Y/R/B/O |
NT_011091 | AC008743 | 64504301 | 3 | chr19 | NT_011091 | AC010325 | 64638734 | 2 | 25096 | 0 | 0 | 25096 |
| S/G/Y/R/B/O |
NT_011091 | AC008743 | 64504301 | 3 | chr19 | NT_011091 | AC020909 | 64348508 | 2 | 57661 | 0 | 0 | 57661 |
| S/G/Y/R/B/O |
NT_011091 | AC010325 | 64638734 | 2 | chr19 | NT_011091 | AC011523 | 64778218 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011091 | AC010325 | 64638734 | 2 | chr19 | NT_011091 | AF243527 | 64857927 | 3 | 21455 | 0 | 0 | 21455 |
| S/G/Y/R/B/O |
NT_011091 | AC010325 | 64638734 | 2 |   |   | AC027602 | 64504301 | 1 | 30536 | 0 | 7983 | 38519 |
| S/G/Y/R/B/O |
NT_011091 | AC011523 | 64778218 | 3 | chr19 | NT_011091 | AC037199 | 64818676 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011091 | AC011523 | 64778218 | 3 | chr19 | NT_011091 | AF243527 | 64857927 | 3 | 40253 | 0 | 0 | 40253 |
| S/G/Y/R/B/O |
NT_011091 | AC011523 | 64778218 | 3 |   |   | AC027602 | 64857927 | 1 | 40343 | 0 | 0 | 40343 |
| S/G/Y/R/B/O |
NT_011091 | AC037199 | 64818676 | 3 | chr19 | NT_011091 | AF243527 | 64857927 | 3 | 42432 | 0 | 0 | 42432 |
| S/G/Y/R/B/O |
NT_011091 | AC037199 | 64818676 | 3 |   |   | AC027602 | 64857927 | 1 | 42075 | 0 | 0 | 42075 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 | chr19 | NT_011091 | AC011473 | 64988887 | 3 | 42184 | 0 | 0 | 42184 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 | chr19 | NT_011091 | AC010325 | 64638734 | 2 | 21455 | 0 | 0 | 21455 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 | chr19 | NT_011091 | AC011523 | 64778218 | 3 | 40253 | 0 | 0 | 40253 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 |   |   | AC027602 | 64778218 | 1 | 145470 | 2661 | 36389 | 184520 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 |   |   | AC073185 | 64818676 | 1 | 16154 | 7684 | 33287 | 57125 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 |   |   | AF113169 | 64818676 | 3 | 12213 | 0 | 0 | 12213 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 |   |   | AF135025 | 64818676 | 3 | 11817 | 0 | 0 | 11817 |
| S/G/Y/R/B/O |
NT_011091 | AF243527 | 64857927 | 3 |   |   | AF135028 | 64818676 | 3 | 11570 | 0 | 0 | 11570 |
| S/G/Y/R/B/O |
NT_011091 | AC011473 | 64988887 | 3 | chr19 | NT_011091 | AC063977 | 65078999 | 2 | 11388 | 0 | 0 | 11388 |
| S/G/Y/R/B/O |
NT_011091 | AC011473 | 64988887 | 3 |   |   | AC026638 | 64818676 | 1 | 11368 | 0 | 0 | 11368 |
| S/G/Y/R/B/O |
NT_011091 | AC011473 | 64988887 | 3 |   |   | AC073185 | 65078999 | 1 | 25496 | 6195 | 56128 | 87819 |
| S/G/Y/R/B/O |
NT_011091 | AC011473 | 64988887 | 3 |   |   | AF135024 | 65078999 | 3 | 10080 | 0 | 0 | 10080 |
| S/G/Y/R/B/O |
NT_011091 | AC011473 | 64988887 | 3 |   |   | AF135025 | 65078999 | 3 | 11819 | 0 | 0 | 11819 |
| S/G/Y/R/B/O |
NT_011091 | AC063977 | 65078999 | 2 | chr19 | NT_011091 | AC008750 | 65273579 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011091 | AC063977 | 65078999 | 2 |   |   | AC026638 | 64988887 | 1 | 167127 | 13021 | 1414 | 181562 |
| S/G/Y/R/B/O |
NT_011091 | AC008750 | 65273579 | 3 | chr19 | NT_011091 | AC020914 | 65416624 | 3 | 38207 | 0 | 0 | 38207 |
| S/G/Y/R/B/O |
NT_011091 | AC020914 | 65416624 | 3 | chr19 | NT_011091 | AC018755 | 65519533 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011091 | AC020914 | 65416624 | 3 |   |   | AF277806 | 65273579 | 3 | 10395 | 0 | 0 | 10395 |
| S/G/Y/R/B/O |
NT_011091 | AC018755 | 65519533 | 3 | chr19 | NT_011091 | AC005946 | 65748563 | 3 | 11251 | 0 | 0 | 11251 |
| S/G/Y/R/B/O |
NT_011091 | AC005946 | 65748563 | 3 | chr19 | NT_011091 | AC006272 | 65774704 | 3 | 9494 | 0 | 0 | 9494 |
| S/G/Y/R/B/O |
NT_011091 | AC006272 | 65774704 | 3 | chr19 | NT_011091 | AC074141 | 65807031 | 3 | 8057 | 0 | 0 | 8057 |
| S/G/Y/R/B/O |
NT_011091 | AC074141 | 65807031 | 3 | chr19 | NT_011091 | AC011460 | 65833780 | 3 | 20760 | 0 | 0 | 20760 |
| S/G/Y/R/B/O |
NT_011091 | AC011460 | 65833780 | 3 | chr19 | NT_011091 | AC011468 | 65930868 | 3 | 13975 | 0 | 0 | 13975 |
| S/G/Y/R/B/O |
NT_011091 | AC011468 | 65930868 | 3 | chr19 | NT_011091 | AC010320 | 66108312 | 3 | 5175 | 0 | 0 | 5175 |
| S/G/Y/R/B/O |
NT_011091 | AC010320 | 66108312 | 3 | chr19 | NT_011091 | AC010332 | 66323588 | 3 | 23262 | 0 | 0 | 23262 |
| S/G/Y/R/B/O |
NT_011091 | AC010320 | 66108312 | 3 |   |   | AC027474 | 65930868 | 1 | 86405 | 8460 | 1414 | 96279 |
| S/G/Y/R/B/O |
NT_011091 | AC010332 | 66323588 | 3 | chr19 | NT_011091 | AC010506 | 66421556 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011091 | AC010332 | 66323588 | 3 |   |   | AC021112 | 66108312 | 1 | 52683 | 0 | 20660 | 73343 |
| S/G/Y/R/B/O |
NT_011091 | AC010332 | 66323588 | 3 |   |   | AC027474 | 66108312 | 1 | 14961 | 303 | 0 | 15264 |
| S/G/Y/R/B/O |
NT_011091 | AC010506 | 66421556 | 3 | chr19 | NT_011091 | AC022150 | 66453899 | 3 | 16895 | 0 | 0 | 16895 |
| S/G/Y/R/B/O |
NT_011091 | AC010506 | 66421556 | 3 |   |   | AC021112 | 66108312 | 1 | 17222 | 0 | 9002 | 26224 |
| S/G/Y/R/B/O |
NT_011091 | AC010506 | 66421556 | 3 |   |   | AC021848 | 66108312 | 1 | 21038 | 0 | 0 | 21038 |
| S/G/Y/R/B/O |
NT_011091 | AC022150 | 66453899 | 3 | chr19 | NT_011091 | AC008813 | 66665153 | 3 | 19490 | 0 | 0 | 19490 |
| S/G/Y/R/B/O |
NT_011091 | AC022150 | 66453899 | 3 | chr16 | NT_010393 | AC024120 | 5015781 | 1 | 38402 | 32256 | 45377 | 116035 |
| S/G/Y/R/B/O |
NT_011091 | AC022150 | 66453899 | 3 |   |   | AC021112 | 66421556 | 1 | 43671 | 1500 | 14431 | 59602 |
| S/G/Y/R/B/O |
NT_011091 | AC022150 | 66453899 | 3 |   |   | AC021848 | 66421556 | 1 | 95849 | 0 | 49568 | 145417 |
| S/G/Y/R/B/O |
NT_011091 | AC008813 | 66665153 | 3 | chr19 | NT_011091 | AC010487 | 66808533 | 3 | 13016 | 0 | 0 | 13016 |
| S/G/Y/R/B/O |
NT_011091 | AC008813 | 66665153 | 3 | chr19 | NT_011091 | AP004783 | 67092857 | 1 | 38622 | 8215 | 7366 | 54203 |
| S/G/Y/R/B/O |
NT_011091 | AC010487 | 66808533 | 3 | chr19 | NT_011091 | AC010328 | 66897858 | 3 | 0 | 1787 | 0 | 1787 |
| S/G/Y/R/B/O |
NT_011091 | AC010487 | 66808533 | 3 | chr19 | NT_011091 | AP004783 | 67092857 | 1 | 62149 | 7076 | 9292 | 78517 |
| S/G/Y/R/B/O |
NT_011091 | AC010328 | 66897858 | 3 | chr19 | NT_011091 | AP004783 | 67092857 | 1 | 21490 | 0 | 0 | 21490 |
| S/G/Y/R/B/O |
NT_011091 | AC010328 | 66897858 | 3 |   |   | AC015589 | 66808533 | 1 | 96155 | 7690 | 10202 | 114047 |
| S/G/Y/R/B/O |
NT_011091 | AP004783 | 67092857 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011091 | AP004783 | 67092857 | 1 | chr19 | NT_011091 | AC008813 | 66665153 | 3 | 38622 | 8215 | 7366 | 54203 |
| S/G/Y/R/B/O |
NT_011091 | AP004783 | 67092857 | 1 | chr19 | NT_011091 | AC010487 | 66808533 | 3 | 62149 | 7076 | 9292 | 78517 |
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