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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033316 | AC010458 | 61845199 | 3 | chr19 | NT_033316 | AC011466 | 61950987 | 3 | 48277 | 0 | 0 | 48277 |
| S/G/Y/R/B/O |
NT_033316 | AC010458 | 61845199 | 3 |   |   | AC011212 | 61705904 | 1 | 34618 | 2833 | 0 | 37451 |
| S/G/Y/R/B/O |
NT_033316 | AC011466 | 61950987 | 3 | chr19 | NT_033316 | AC008392 | 62069834 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033316 | AC011466 | 61950987 | 3 |   |   | AC011212 | 61845199 | 1 | 115345 | 9559 | 15600 | 140504 |
| S/G/Y/R/B/O |
NT_033316 | AC008392 | 62069834 | 3 | chr19 | NT_033316 | AC020955 | 62155557 | 3 | 21519 | 0 | 0 | 21519 |
| S/G/Y/R/B/O |
NT_033316 | AC008392 | 62069834 | 3 |   |   | AC027218 | 62155557 | 1 | 33262 | 13670 | 3550 | 50482 |
| S/G/Y/R/B/O |
NT_033316 | AC020955 | 62155557 | 3 | chr19 | NT_033316 | AC011514 | 62175613 | 3 | 2607 | 0 | 0 | 2607 |
| S/G/Y/R/B/O |
NT_033316 | AC020955 | 62155557 | 3 |   |   | AC027218 | 62175613 | 1 | 24582 | 4928 | 1493 | 31003 |
| S/G/Y/R/B/O |
NT_033316 | AC020955 | 62155557 | 3 |   |   | AC073131 | 62175613 | 1 | 18486 | 2133 | 0 | 20619 |
| S/G/Y/R/B/O |
NT_033316 | AC011514 | 62175613 | 3 | chr19 | NT_033316 | AC011527 | 62212385 | 3 | 3860 | 0 | 0 | 3860 |
| S/G/Y/R/B/O |
NT_033316 | AC011514 | 62175613 | 3 |   |   | AC027218 | 62155557 | 1 | 16996 | 6153 | 4765 | 27914 |
| S/G/Y/R/B/O |
NT_033316 | AC011527 | 62212385 | 3 | chr19 | NT_033316 | AC008403 | 62243963 | 3 | 7312 | 0 | 0 | 7312 |
| S/G/Y/R/B/O |
NT_033316 | AC011527 | 62212385 | 3 |   |   | AC027218 | 62175613 | 1 | 23470 | 2969 | 0 | 26439 |
| S/G/Y/R/B/O |
NT_033316 | AC011527 | 62212385 | 3 |   |   | AC073131 | 62175613 | 1 | 21020 | 7163 | 4093 | 32276 |
| S/G/Y/R/B/O |
NT_033316 | AC008403 | 62243963 | 3 | chr19 | NT_033316 | AC022154 | 62426714 | 3 | 7999 | 0 | 0 | 7999 |
| S/G/Y/R/B/O |
NT_033316 | AC008403 | 62243963 | 3 |   |   | AC040922 | 62426714 | 1 | 32356 | 5951 | 11487 | 49794 |
| S/G/Y/R/B/O |
NT_033316 | AC008403 | 62243963 | 3 |   |   | AC073131 | 62426714 | 1 | 27282 | 7886 | 28208 | 63376 |
| S/G/Y/R/B/O |
NT_033316 | AC022154 | 62426714 | 3 | chr19 | NT_033316 | AC008888 | 62456857 | 2 | 16083 | 0 | 0 | 16083 |
| S/G/Y/R/B/O |
NT_033316 | AC022154 | 62426714 | 3 |   |   | AC040922 | 62456857 | 1 | 26679 | 0 | 0 | 26679 |
| S/G/Y/R/B/O |
NT_033316 | AC008888 | 62456857 | 2 | chr19 | NT_033316 | AC009002 | 62561708 | 3 | 9692 | 0 | 0 | 9692 |
| S/G/Y/R/B/O |
NT_033316 | AC008888 | 62456857 | 2 |   |   | AC024740 | 62426714 | 1 | 41839 | 2683 | 0 | 44522 |
| S/G/Y/R/B/O |
NT_033316 | AC008888 | 62456857 | 2 |   |   | AC040922 | 62426714 | 1 | 60784 | 23649 | 5054 | 89487 |
| S/G/Y/R/B/O |
NT_033316 | AC009002 | 62561708 | 3 | chr19 | NT_033316 | AC026803 | 62589398 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033316 | AC009002 | 62561708 | 3 |   |   | AC024740 | 62456857 | 1 | 24527 | 2679 | 0 | 27206 |
| S/G/Y/R/B/O |
NT_033316 | AC026803 | 62589398 | 2 | chr19 | NT_033316 | AC098792 | 62807271 | 3 | 0 | 1213 | 0 | 1213 |
| S/G/Y/R/B/O |
NT_033316 | AC026803 | 62589398 | 2 |   |   | AC008749 | 62456857 | 1 | 35105 | 19557 | 66023 | 120685 |
| S/G/Y/R/B/O |
NT_033316 | AC026803 | 62589398 | 2 |   |   | AC024740 | 62456857 | 1 | 102379 | 1741 | 8607 | 112727 |
| S/G/Y/R/B/O |
NT_033316 | AC098792 | 62807271 | 3 | chr19 | NT_033316 | AC008687 | 62811606 | 3 | 0 | 1367 | 0 | 1367 |
| S/G/Y/R/B/O |
NT_033316 | AC008687 | 62811606 | 3 | chr19 | NT_033316 | AC096864 | 62967872 | 3 | 0 | 1191 | 0 | 1191 |
| S/G/Y/R/B/O |
NT_033316 | AC008687 | 62811606 | 3 |   |   | NG_000019 | 62807271 | 3 | 72000 | 0 | 0 | 72000 |
| S/G/Y/R/B/O |
NT_033316 | AC096864 | 62967872 | 3 | chr19 | NT_033316 | AC008891 | 62968959 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033316 | AC008891 | 62968959 | 3 | chr19 | NT_033316 | AC011450 | 63085494 | 3 | 20324 | 0 | 0 | 20324 |
| S/G/Y/R/B/O |
NT_033316 | AC011450 | 63085494 | 3 | chr19 | NT_033316 | AC010524 | 63171261 | 3 | 10849 | 0 | 0 | 10849 |
| S/G/Y/R/B/O |
NT_033316 | AC011450 | 63085494 | 3 | chr19 | NT_033316 | AC068670 | 63234779 | 1 | 16194 | 2332 | 0 | 18526 |
| S/G/Y/R/B/O |
NT_033316 | AC010524 | 63171261 | 3 | chr19 | NT_033316 | AC010643 | 63197748 | 3 | 0 | 1871 | 0 | 1871 |
| S/G/Y/R/B/O |
NT_033316 | AC010524 | 63171261 | 3 | chr19 | NT_033316 | AC068670 | 63234779 | 1 | 15074 | 5374 | 0 | 20448 |
| S/G/Y/R/B/O |
NT_033316 | AC010643 | 63197748 | 3 | chr19 | NT_033316 | AC068670 | 63234779 | 1 | 35139 | 0 | 0 | 35139 |
| S/G/Y/R/B/O |
NT_033316 | AC068670 | 63234779 | 1 | chr19 | NT_033316 | AC010619 | 63235476 | 2 | 71372 | 14631 | 5231 | 91234 |
| S/G/Y/R/B/O |
NT_033316 | AC068670 | 63234779 | 1 | chr19 | NT_033316 | AC010524 | 63171261 | 3 | 15074 | 5374 | 0 | 20448 |
| S/G/Y/R/B/O |
NT_033316 | AC068670 | 63234779 | 1 | chr19 | NT_033316 | AC011450 | 63085494 | 3 | 16194 | 2332 | 0 | 18526 |
| S/G/Y/R/B/O |
NT_033316 | AC010619 | 63235476 | 2 | chr19 | NT_033316 | AC011495 | 63396493 | 3 | 15829 | 2202 | 0 | 18031 |
| S/G/Y/R/B/O |
NT_033316 | AC010619 | 63235476 | 2 |   |   | AB028893 | 63271941 | 3 | 13184 | 0 | 0 | 13184 |
| S/G/Y/R/B/O |
NT_033316 | AC011495 | 63396493 | 3 | chr19 | NT_033316 | AC098783 | 63606337 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033316 | AC011495 | 63396493 | 3 | chr19 | NT_033316 | AC021163 | 63688422 | 1 | 10817 | 4063 | 4401 | 19281 |
| S/G/Y/R/B/O |
NT_033316 | AC011495 | 63396493 | 3 |   |   | AF200923 | 63688422 | 3 | 24906 | 0 | 0 | 24906 |
| S/G/Y/R/B/O |
NT_033316 | AC011495 | 63396493 | 3 |   |   | AF222689 | 63688422 | 3 | 15375 | 0 | 0 | 15375 |
| S/G/Y/R/B/O |
NT_033316 | AC011495 | 63396493 | 3 |   |   | AF254411 | 63688422 | 3 | 18484 | 0 | 0 | 18484 |
| S/G/Y/R/B/O |
NT_033316 | AC011495 | 63396493 | 3 |   |   | AF289221 | 63688422 | 3 | 18512 | 0 | 0 | 18512 |
| S/G/Y/R/B/O |
NT_033316 | AC098783 | 63606337 | 3 | chr19 | NT_033316 | AC006942 | 63607983 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033316 | AC006942 | 63607983 | 3 | chr19 | NT_033316 | AC018766 | 63649395 | 3 | 2597 | 0 | 0 | 2597 |
| S/G/Y/R/B/O |
NT_033316 | AC006942 | 63607983 | 3 | chr19 | NT_033316 | AC021163 | 63688422 | 1 | 26919 | 0 | 0 | 26919 |
| S/G/Y/R/B/O |
NT_033316 | AC006942 | 63607983 | 3 |   |   | AF289221 | 63688422 | 3 | 23299 | 0 | 0 | 23299 |
| S/G/Y/R/B/O |
NT_033316 | AC018766 | 63649395 | 3 | chr19 | NT_033316 | AC021163 | 63688422 | 1 | 7669 | 0 | 32124 | 39793 |
| S/G/Y/R/B/O |
NT_033316 | AC021163 | 63688422 | 1 | chr19 | NT_033316 | AC011452 | 63715016 | 3 | 29778 | 5187 | 5248 | 40213 |
| S/G/Y/R/B/O |
NT_033316 | AC021163 | 63688422 | 1 | chr19 | NT_033316 | AC006942 | 63607983 | 3 | 26919 | 0 | 0 | 26919 |
| S/G/Y/R/B/O |
NT_033316 | AC021163 | 63688422 | 1 | chr19 | NT_033316 | AC011495 | 63396493 | 3 | 10817 | 4063 | 4401 | 19281 |
| S/G/Y/R/B/O |
NT_033316 | AC021163 | 63688422 | 1 |   |   | AF354258 | 63606337 | 3 | 10200 | 0 | 0 | 10200 |
| S/G/Y/R/B/O |
NT_033316 | AC011452 | 63715016 | 3 | chr19 | NT_033316 | AC010624 | 63838950 | 1 | 27781 | 0 | 21051 | 48832 |
| S/G/Y/R/B/O |
NT_033316 | AC011452 | 63715016 | 3 |   |   | AC021154 | 63838950 | 1 | 93293 | 2449 | 10657 | 106399 |
| S/G/Y/R/B/O |
NT_033316 | AC010624 | 63838950 | 1 | chr19 | NT_033316 | AC020906 | 63931551 | 3 | 10736 | 0 | 0 | 10736 |
| S/G/Y/R/B/O |
NT_033316 | AC010624 | 63838950 | 1 |   |   | AC021154 | 63931551 | 1 | 42759 | 2449 | 6044 | 51252 |
| S/G/Y/R/B/O |
NT_033316 | AC010624 | 63838950 | 1 |   |   | AC093239 | 61762766 | 1 | 11775 | 0 | 33067 | 44842 |
| S/G/Y/R/B/O |
NT_033316 | AC010624 | 63838950 | 1 |   |   | AC093518 | 61762766 | 3 | 44639 | 0 | 0 | 44639 |
| S/G/Y/R/B/O |
NT_033316 | AC020906 | 63931551 | 3 | chr19 | NT_033316 | AC010515 | 64030623 | 2 | 11096 | 0 | 0 | 11096 |
| S/G/Y/R/B/O |
NT_033316 | AC020906 | 63931551 | 3 | chr19 | NT_033316 | AC019157 | 64095099 | 1 | 37519 | 2435 | 17777 | 57731 |
| S/G/Y/R/B/O |
NT_033316 | AC010515 | 64030623 | 2 | chr19 | NT_033316 | AC019157 | 64095099 | 1 | 13965 | 0 | 12104 | 26069 |
| S/G/Y/R/B/O |
NT_033316 | AC019157 | 64095099 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033316 | AC019157 | 64095099 | 1 | chr19 | NT_011091 | AC008655 | 64225359 | 3 | 32756 | 1783 | 14349 | 48888 |
| S/G/Y/R/B/O |
NT_033316 | AC019157 | 64095099 | 1 | chr19 | NT_033316 | AC020906 | 63931551 | 3 | 37519 | 2435 | 17777 | 57731 |
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