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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 | chr19 | NT_033317 | AC024483 | 24804533 | 1 | 48294 | 0 | 3869 | 52163 |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 | chr19 | NT_033317 | AC012431 | 24806490 | 1 | 70676 | 2672 | 4615 | 77963 |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 | chr19 | NT_033317 | AC016628 | 25255867 | 3 | 29812 | 0 | 0 | 29812 |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 | chr5 | NT_006576 | AC060806 | 2421322 | 1 | 27316 | 6891 | 10441 | 44648 |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 | chr5 | NT_006576 | AC106772 | 2393510 | 2 | 24957 | 3330 | 35717 | 64004 |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 | chr5 | NT_006576 | AC113363 | 2513434 | 1 | 33210 | 0 | 8611 | 41821 |
| S/G/Y/R/B/O |
NT_033317 | AC010300 | 24772197 | 1 |   |   | AC092329 | 2421322 | 1 | 12859 | 5050 | 7851 | 25760 |
| S/G/Y/R/B/O |
NT_033317 | AC024483 | 24804533 | 1 | chr19 | NT_033317 | AC012431 | 24806490 | 1 | 69222 | 0 | 4197 | 73419 |
| S/G/Y/R/B/O |
NT_033317 | AC024483 | 24804533 | 1 |   |   | AC092329 | 24510973 | 1 | 40499 | 13687 | 57826 | 112012 |
| S/G/Y/R/B/O |
NT_033317 | AC012431 | 24806490 | 1 | chr19 | NT_033317 | AC073544 | 24913159 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033317 | AC012431 | 24806490 | 1 | chr19 | NT_033317 | AC010300 | 24772197 | 1 | 70676 | 2672 | 4615 | 77963 |
| S/G/Y/R/B/O |
NT_033317 | AC012431 | 24806490 | 1 | chr19 | NT_033317 | AC016628 | 25255867 | 3 | 41043 | 0 | 0 | 41043 |
| S/G/Y/R/B/O |
NT_033317 | AC012431 | 24806490 | 1 |   |   | AC092329 | 24804533 | 1 | 26689 | 3293 | 11838 | 41820 |
| S/G/Y/R/B/O |
NT_033317 | AC073544 | 24913159 | 1 | chr19 | NT_033317 | AC020943 | 24970546 | 3 | 10728 | 0 | 0 | 10728 |
| S/G/Y/R/B/O |
NT_033317 | AC073544 | 24913159 | 1 | chr19 | NT_033317 | AC011493 | 25007687 | 3 | 16631 | 0 | 3972 | 20603 |
| S/G/Y/R/B/O |
NT_033317 | AC073544 | 24913159 | 1 | chr19 | NT_033317 | AC099500 | 25351656 | 1 | 36892 | 0 | 0 | 36892 |
| S/G/Y/R/B/O |
NT_033317 | AC020943 | 24970546 | 3 | chr19 | NT_033317 | AC011493 | 25007687 | 3 | 8273 | 0 | 0 | 8273 |
| S/G/Y/R/B/O |
NT_033317 | AC011493 | 25007687 | 3 | chr19 | NT_033317 | AC025127 | 25115498 | 1 | 57986 | 9306 | 1306 | 68598 |
| S/G/Y/R/B/O |
NT_033317 | AC011493 | 25007687 | 3 | chr19 | NT_033317 | AC073544 | 24913159 | 1 | 16631 | 0 | 3972 | 20603 |
| S/G/Y/R/B/O |
NT_033317 | AC025127 | 25115498 | 1 | chr19 | NT_033317 | AC074140 | 25119262 | 2 | 25601 | 0 | 5262 | 30863 |
| S/G/Y/R/B/O |
NT_033317 | AC025127 | 25115498 | 1 | chr19 | NT_033317 | AC022409 | 25161657 | 3 | 41563 | 7400 | 5050 | 54013 |
| S/G/Y/R/B/O |
NT_033317 | AC074140 | 25119262 | 2 | chr19 | NT_033317 | AC022409 | 25161657 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033317 | AC022409 | 25161657 | 3 | chr19 | NT_033317 | AC093058 | 25253236 | 3 | 2084 | 0 | 0 | 2084 |
| S/G/Y/R/B/O |
NT_033317 | AC022409 | 25161657 | 3 | chr19 | NT_033317 | AC025127 | 25115498 | 1 | 41563 | 7400 | 5050 | 54013 |
| S/G/Y/R/B/O |
NT_033317 | AC093058 | 25253236 | 3 | chr19 | NT_033317 | AC016628 | 25255867 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033317 | AC016628 | 25255867 | 3 | chr19 | NT_033317 | AC099500 | 25351656 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033317 | AC016628 | 25255867 | 3 | chr19 | NT_033317 | AC010300 | 24772197 | 1 | 29812 | 0 | 0 | 29812 |
| S/G/Y/R/B/O |
NT_033317 | AC016628 | 25255867 | 3 | chr19 | NT_033317 | AC012431 | 24806490 | 1 | 41043 | 0 | 0 | 41043 |
| S/G/Y/R/B/O |
NT_033317 | AC099500 | 25351656 | 1 | chr19 | NT_033317 | AC008981 | 25375324 | 3 | 30235 | 0 | 0 | 30235 |
| S/G/Y/R/B/O |
NT_033317 | AC099500 | 25351656 | 1 | chr19 | NT_033317 | AC073544 | 24913159 | 1 | 36892 | 0 | 0 | 36892 |
| S/G/Y/R/B/O |
NT_033317 | AC008981 | 25375324 | 3 | chr19 | NT_033317 | AC008976 | 25414264 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033317 | AC008976 | 25414264 | 3 | chr19 | NT_033317 | AC011503 | 25448252 | 3 | 19168 | 0 | 0 | 19168 |
| S/G/Y/R/B/O |
NT_033317 | AC011503 | 25448252 | 3 | chr19 | NT_033317 | AC011543 | 25533137 | 3 | 0 | 1963 | 0 | 1963 |
| S/G/Y/R/B/O |
NT_033317 | AC011543 | 25533137 | 3 | chr19 | NT_033317 | AC092279 | 25572381 | 3 | 3981 | 0 | 0 | 3981 |
| S/G/Y/R/B/O |
NT_033317 | AC092279 | 25572381 | 3 | chr19 | NT_033317 | AC021090 | 25685959 | 3 | 10656 | 0 | 0 | 10656 |
| S/G/Y/R/B/O |
NT_033317 | AC092279 | 25572381 | 3 |   |   | AC007793 | 25572381 | 3 | 38557 | 0 | 0 | 38557 |
| S/G/Y/R/B/O |
NT_033317 | AC092279 | 25572381 | 3 |   |   | AC011534 | 25572381 | 3 | 36828 | 0 | 0 | 36828 |
| S/G/Y/R/B/O |
NT_033317 | AC021090 | 25685959 | 3 | chr19 | NT_033317 | AC011538 | 25715913 | 3 | 27013 | 0 | 0 | 27013 |
| S/G/Y/R/B/O |
NT_033317 | AC021090 | 25685959 | 3 | chr19 | NT_033317 | AC073534 | 25727627 | 1 | 11319 | 0 | 1196 | 12515 |
| S/G/Y/R/B/O |
NT_033317 | AC021090 | 25685959 | 3 | chr5 | NT_006654 | AC091983 | 106967472 | 1 | 35856 | 0 | 0 | 35856 |
| S/G/Y/R/B/O |
NT_033317 | AC011538 | 25715913 | 3 | chr19 | NT_033317 | AC073534 | 25727627 | 1 | 20110 | 0 | 6553 | 26663 |
| S/G/Y/R/B/O |
NT_033317 | AC011538 | 25715913 | 3 | chr5 | NT_006654 | AC091983 | 106967472 | 1 | 14042 | 0 | 0 | 14042 |
| S/G/Y/R/B/O |
NT_033317 | AC073534 | 25727627 | 1 | chr19 | NT_033317 | AC011550 | 25771804 | 3 | 28272 | 2080 | 0 | 30352 |
| S/G/Y/R/B/O |
NT_033317 | AC073534 | 25727627 | 1 | chr19 | NT_033317 | AC021090 | 25685959 | 3 | 11319 | 0 | 1196 | 12515 |
| S/G/Y/R/B/O |
NT_033317 | AC073534 | 25727627 | 1 | chr5 | NT_006654 | AC022103 | 106829688 | 3 | 13268 | 3968 | 10867 | 28103 |
| S/G/Y/R/B/O |
NT_033317 | AC073534 | 25727627 | 1 | chr5 | NT_006654 | AC026447 | 106958863 | 2 | 24987 | 5800 | 12516 | 43303 |
| S/G/Y/R/B/O |
NT_033317 | AC073534 | 25727627 | 1 | chr5 | NT_006654 | AC091983 | 106967472 | 1 | 43936 | 5901 | 25754 | 75591 |
| S/G/Y/R/B/O |
NT_033317 | AC073534 | 25727627 | 1 |   |   | AC012536 | 25771804 | 1 | 10006 | 6279 | 7298 | 23583 |
| S/G/Y/R/B/O |
NT_033317 | AC011550 | 25771804 | 3 | chr19 | NT_033317 | AC073535 | 25793604 | 3 | 18178 | 0 | 0 | 18178 |
| S/G/Y/R/B/O |
NT_033317 | AC011550 | 25771804 | 3 | chr5 | NT_006654 | AC091983 | 106967472 | 1 | 35221 | 0 | 981 | 36202 |
| S/G/Y/R/B/O |
NT_033317 | AC073535 | 25793604 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033317 | AC073535 | 25793604 | 3 | chr19 | NT_033315 | AC073541 | 39981033 | 1 | 12959 | 0 | 0 | 12959 |
| S/G/Y/R/B/O |
NT_033317 | AC073535 | 25793604 | 3 |   |   | AC007788 | 106967472 | 3 | 40587 | 0 | 0 | 40587 |
| S/G/Y/R/B/O |
NT_033317 | AC073535 | 25793604 | 3 |   |   | AC007794 | 106967472 | 3 | 39384 | 0 | 0 | 39384 |
| S/G/Y/R/B/O |
NT_033317 | AC073535 | 25793604 | 3 |   |   | AC011512 | 106967472 | 3 | 39583 | 0 | 0 | 39583 |
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