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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC093230 | 9239912 | 1 | 33191 | 0 | 13148 | 46339 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC008734 | 9544715 | 1 | 13767 | 0 | 14712 | 28479 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC092303 | 9287806 | 1 | 14406 | 0 | 9650 | 24056 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC092307 | 9674477 | 1 | 23741 | 0 | 10133 | 33874 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC092311 | 9423699 | 3 | 38319 | 0 | 0 | 38319 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC092312 | 9689585 | 3 | 25609 | 0 | 2059 | 27668 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC092314 | 9470637 | 3 | 33866 | 0 | 0 | 33866 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 | chr19 | NT_025133 | AC104093 | 9465216 | 1 | 35875 | 7895 | 19665 | 63435 |
| S/G/Y/R/B/O |
NT_025133 | AC012616 | 9224126 | 1 |   |   | AC109590 | 9465216 | 1 | 14989 | 0 | 2055 | 17044 |
| S/G/Y/R/B/O |
NT_025133 | AC093230 | 9239912 | 1 | chr19 | NT_025133 | AC092303 | 9287806 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_025133 | AC093230 | 9239912 | 1 | chr19 | NT_025133 | AC092311 | 9423699 | 3 | 21751 | 0 | 4594 | 26345 |
| S/G/Y/R/B/O |
NT_025133 | AC092303 | 9287806 | 1 | chr19 | NT_025133 | AC009007 | 9287990 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_025133 | AC092303 | 9287806 | 1 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 14406 | 0 | 9650 | 24056 |
| S/G/Y/R/B/O |
NT_025133 | AC092303 | 9287806 | 1 | chr19 | NT_025133 | AC092311 | 9423699 | 3 | 14504 | 0 | 0 | 14504 |
| S/G/Y/R/B/O |
NT_025133 | AC092303 | 9287806 | 1 |   |   | AC113362 | 9465216 | 1 | 23086 | 0 | 997 | 24083 |
| S/G/Y/R/B/O |
NT_025133 | AC009007 | 9287990 | 3 | chr19 | NT_025133 | AC008762 | 9326451 | 3 | 21408 | 0 | 0 | 21408 |
| S/G/Y/R/B/O |
NT_025133 | AC008762 | 9326451 | 3 | chr19 | NT_025133 | AC092298 | 9379954 | 3 | 23273 | 0 | 0 | 23273 |
| S/G/Y/R/B/O |
NT_025133 | AC092298 | 9379954 | 3 | chr19 | NT_025133 | AC092316 | 9400299 | 3 | 19169 | 0 | 0 | 19169 |
| S/G/Y/R/B/O |
NT_025133 | AC092316 | 9400299 | 3 | chr19 | NT_025133 | AC010322 | 9416325 | 3 | 6250 | 0 | 0 | 6250 |
| S/G/Y/R/B/O |
NT_025133 | AC010322 | 9416325 | 3 | chr19 | NT_025133 | AC092311 | 9423699 | 3 | 3560 | 0 | 0 | 3560 |
| S/G/Y/R/B/O |
NT_025133 | AC092311 | 9423699 | 3 | chr19 | NT_025133 | AC104093 | 9465216 | 1 | 0 | 0 | 2394 | 2394 |
| S/G/Y/R/B/O |
NT_025133 | AC092311 | 9423699 | 3 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 38319 | 0 | 0 | 38319 |
| S/G/Y/R/B/O |
NT_025133 | AC092311 | 9423699 | 3 | chr19 | NT_025133 | AC092303 | 9287806 | 1 | 14504 | 0 | 0 | 14504 |
| S/G/Y/R/B/O |
NT_025133 | AC092311 | 9423699 | 3 | chr19 | NT_025133 | AC093230 | 9239912 | 1 | 21751 | 0 | 4594 | 26345 |
| S/G/Y/R/B/O |
NT_025133 | AC104093 | 9465216 | 1 | chr19 | NT_025133 | AC092314 | 9470637 | 3 | 3017 | 6494 | 3620 | 13131 |
| S/G/Y/R/B/O |
NT_025133 | AC104093 | 9465216 | 1 | chr19 | NT_025133 | AC008734 | 9544715 | 1 | 26903 | 3195 | 6163 | 36261 |
| S/G/Y/R/B/O |
NT_025133 | AC104093 | 9465216 | 1 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 35875 | 7895 | 19665 | 63435 |
| S/G/Y/R/B/O |
NT_025133 | AC104093 | 9465216 | 1 | chr19 | NT_025133 | AC092313 | 9509649 | 3 | 17389 | 3739 | 757 | 21885 |
| S/G/Y/R/B/O |
NT_025133 | AC104093 | 9465216 | 1 | chr19 | NT_025133 | AC093234 | 9533002 | 3 | 12047 | 1644 | 0 | 13691 |
| S/G/Y/R/B/O |
NT_025133 | AC104093 | 9465216 | 1 |   |   | AC092566 | 9470637 | 3 | 12047 | 1644 | 0 | 13691 |
| S/G/Y/R/B/O |
NT_025133 | AC092314 | 9470637 | 3 | chr19 | NT_025133 | AC092313 | 9509649 | 3 | 15229 | 0 | 0 | 15229 |
| S/G/Y/R/B/O |
NT_025133 | AC092314 | 9470637 | 3 | chr19 | NT_025133 | AC008734 | 9544715 | 1 | 10056 | 0 | 27135 | 37191 |
| S/G/Y/R/B/O |
NT_025133 | AC092314 | 9470637 | 3 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 33866 | 0 | 0 | 33866 |
| S/G/Y/R/B/O |
NT_025133 | AC092313 | 9509649 | 3 | chr19 | NT_025133 | AC093234 | 9533002 | 3 | 25252 | 0 | 0 | 25252 |
| S/G/Y/R/B/O |
NT_025133 | AC092313 | 9509649 | 3 | chr19 | NT_025133 | AC008734 | 9544715 | 1 | 18171 | 0 | 13252 | 31423 |
| S/G/Y/R/B/O |
NT_025133 | AC092313 | 9509649 | 3 | chr19 | NT_025133 | AC104093 | 9465216 | 1 | 17389 | 3739 | 757 | 21885 |
| S/G/Y/R/B/O |
NT_025133 | AC092313 | 9509649 | 3 |   |   | AC092566 | 9470637 | 3 | 25252 | 0 | 0 | 25252 |
| S/G/Y/R/B/O |
NT_025133 | AC093234 | 9533002 | 3 | chr19 | NT_025133 | AC008734 | 9544715 | 1 | 36964 | 0 | 0 | 36964 |
| S/G/Y/R/B/O |
NT_025133 | AC093234 | 9533002 | 3 | chr19 | NT_025133 | AC104093 | 9465216 | 1 | 12047 | 1644 | 0 | 13691 |
| S/G/Y/R/B/O |
NT_025133 | AC093234 | 9533002 | 3 |   |   | AC092566 | 9509649 | 3 | 36965 | 0 | 0 | 36965 |
| S/G/Y/R/B/O |
NT_025133 | AC008734 | 9544715 | 1 | chr19 | NT_025133 | AC092307 | 9674477 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_025133 | AC008734 | 9544715 | 1 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 13767 | 0 | 14712 | 28479 |
| S/G/Y/R/B/O |
NT_025133 | AC008734 | 9544715 | 1 | chr19 | NT_025133 | AC092313 | 9509649 | 3 | 18171 | 0 | 13252 | 31423 |
| S/G/Y/R/B/O |
NT_025133 | AC008734 | 9544715 | 1 | chr19 | NT_025133 | AC092314 | 9470637 | 3 | 10056 | 0 | 27135 | 37191 |
| S/G/Y/R/B/O |
NT_025133 | AC008734 | 9544715 | 1 | chr19 | NT_025133 | AC104093 | 9465216 | 1 | 26903 | 3195 | 6163 | 36261 |
| S/G/Y/R/B/O |
NT_025133 | AC008734 | 9544715 | 1 |   |   | AC092566 | 9470637 | 3 | 36964 | 0 | 0 | 36964 |
| S/G/Y/R/B/O |
NT_025133 | AC092307 | 9674477 | 1 | chr19 | NT_025133 | AC092312 | 9689585 | 3 | 7379 | 0 | 10357 | 17736 |
| S/G/Y/R/B/O |
NT_025133 | AC092307 | 9674477 | 1 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 23741 | 0 | 10133 | 33874 |
| S/G/Y/R/B/O |
NT_025133 | AC092312 | 9689585 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_025133 | AC092312 | 9689585 | 3 | chr19 | NT_025133 | AC012616 | 9224126 | 1 | 25609 | 0 | 2059 | 27668 |
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