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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011176 | AC011464 | 9773224 | 3 | chr19 | NT_011176 | AC006271 | 9929639 | 3 | 36084 | 0 | 0 | 36084 |
| S/G/Y/R/B/O |
NT_011176 | AC011464 | 9773224 | 3 |   |   | AC016584 | 9929639 | 1 | 17351 | 0 | 0 | 17351 |
| S/G/Y/R/B/O |
NT_011176 | AC006271 | 9929639 | 3 | chr19 | NT_011176 | AC011451 | 9994145 | 3 | 0 | 1259 | 0 | 1259 |
| S/G/Y/R/B/O |
NT_011176 | AC011451 | 9994145 | 3 | chr19 | NT_011176 | AC008567 | 10173558 | 3 | 57374 | 0 | 0 | 57374 |
| S/G/Y/R/B/O |
NT_011176 | AC008567 | 10173558 | 3 | chr19 | NT_011176 | AC008759 | 10269888 | 2 | 18949 | 0 | 0 | 18949 |
| S/G/Y/R/B/O |
NT_011176 | AC008759 | 10269888 | 2 | chr19 | NT_011176 | AC008752 | 10420617 | 3 | 35979 | 0 | 0 | 35979 |
| S/G/Y/R/B/O |
NT_011176 | AC008752 | 10420617 | 3 | chr19 | NT_011176 | AC008742 | 10558653 | 2 | 22497 | 0 | 0 | 22497 |
| S/G/Y/R/B/O |
NT_011176 | AC008752 | 10420617 | 3 | chr19 | NT_011176 | AC091929 | 10614479 | 1 | 11115 | 0 | 10429 | 21544 |
| S/G/Y/R/B/O |
NT_011176 | AC008742 | 10558653 | 2 | chr19 | NT_011176 | AC091929 | 10614479 | 1 | 119063 | 3731 | 48106 | 170900 |
| S/G/Y/R/B/O |
NT_011176 | AC008742 | 10558653 | 2 | chr19 | NT_011176 | AC020931 | 10721033 | 3 | 13075 | 0 | 0 | 13075 |
| S/G/Y/R/B/O |
NT_011176 | AC091929 | 10614479 | 1 | chr19 | NT_011176 | AC020931 | 10721033 | 3 | 6125 | 0 | 1299 | 7424 |
| S/G/Y/R/B/O |
NT_011176 | AC091929 | 10614479 | 1 | chr19 | NT_011176 | AC008752 | 10420617 | 3 | 11115 | 0 | 10429 | 21544 |
| S/G/Y/R/B/O |
NT_011176 | AC020931 | 10721033 | 3 | chr19 | NT_011176 | AC010077 | 10850081 | 3 | 0 | 1707 | 0 | 1707 |
| S/G/Y/R/B/O |
NT_011176 | AC020931 | 10721033 | 3 | chr19 | NT_011176 | AC008742 | 10558653 | 2 | 13075 | 0 | 0 | 13075 |
| S/G/Y/R/B/O |
NT_011176 | AC010077 | 10850081 | 3 | chr19 | NT_011176 | AC011511 | 10895304 | 3 | 2962 | 0 | 0 | 2962 |
| S/G/Y/R/B/O |
NT_011176 | AC011511 | 10895304 | 3 | chr19 | NT_011176 | AC024182 | 11048845 | 1 | 52123 | 1916 | 8926 | 62965 |
| S/G/Y/R/B/O |
NT_011176 | AC024182 | 11048845 | 1 | chr19 | NT_011176 | AC011557 | 11056038 | 2 | 24081 | 5953 | 8726 | 38760 |
| S/G/Y/R/B/O |
NT_011176 | AC024182 | 11048845 | 1 | chr19 | NT_011176 | AC011529 | 11146975 | 3 | 10562 | 0 | 0 | 10562 |
| S/G/Y/R/B/O |
NT_011176 | AC024182 | 11048845 | 1 | chr19 | NT_011176 | AC011548 | 11108624 | 3 | 26397 | 0 | 11723 | 38120 |
| S/G/Y/R/B/O |
NT_011176 | AC011557 | 11056038 | 2 | chr19 | NT_011176 | AC011548 | 11108624 | 3 | 0 | 0 | 232 | 232 |
| S/G/Y/R/B/O |
NT_011176 | AC011548 | 11108624 | 3 | chr19 | NT_011176 | AC011529 | 11146975 | 3 | 4219 | 0 | 0 | 4219 |
| S/G/Y/R/B/O |
NT_011176 | AC011548 | 11108624 | 3 | chr19 | NT_011176 | AC024182 | 11048845 | 1 | 26397 | 0 | 11723 | 38120 |
| S/G/Y/R/B/O |
NT_011176 | AC011529 | 11146975 | 3 | chr19 | NT_011176 | AC011461 | 11180352 | 3 | 9851 | 0 | 0 | 9851 |
| S/G/Y/R/B/O |
NT_011176 | AC011529 | 11146975 | 3 | chr19 | NT_011176 | AC024182 | 11048845 | 1 | 10562 | 0 | 0 | 10562 |
| S/G/Y/R/B/O |
NT_011176 | AC011461 | 11180352 | 3 | chr19 | NT_011176 | AC011475 | 11271180 | 3 | 8798 | 0 | 0 | 8798 |
| S/G/Y/R/B/O |
NT_011176 | AC011475 | 11271180 | 3 | chr19 | NT_011176 | AC011552 | 11442335 | 2 | 0 | 974 | 0 | 974 |
| S/G/Y/R/B/O |
NT_011176 | AC011475 | 11271180 | 3 |   |   | AF202445 | 11442335 | 3 | 11851 | 0 | 0 | 11851 |
| S/G/Y/R/B/O |
NT_011176 | AC011475 | 11271180 | 3 |   |   | AJ271741 | 11442335 | 3 | 10113 | 0 | 0 | 10113 |
| S/G/Y/R/B/O |
NT_011176 | AC011552 | 11442335 | 2 | chr19 | NT_011176 | AC011554 | 11487847 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011176 | AC011554 | 11487847 | 3 | chr19 | NT_011176 | AC007229 | 11526053 | 3 | 4042 | 0 | 0 | 4042 |
| S/G/Y/R/B/O |
NT_011176 | AC007229 | 11526053 | 3 | chr19 | NT_011176 | AC007565 | 11565138 | 3 | 3138 | 0 | 0 | 3138 |
| S/G/Y/R/B/O |
NT_011176 | AC007565 | 11565138 | 3 | chr19 | NT_011176 | AC011442 | 11604030 | 3 | 4479 | 0 | 0 | 4479 |
| S/G/Y/R/B/O |
NT_011176 | AC011442 | 11604030 | 3 | chr19 | NT_011176 | AC006127 | 11743108 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011176 | AC011442 | 11604030 | 3 |   |   | AF254822 | 11565138 | 3 | 61686 | 0 | 0 | 61686 |
| S/G/Y/R/B/O |
NT_011176 | AC006127 | 11743108 | 3 | chr19 | NT_011176 | AC011485 | 11773842 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011176 | AC006127 | 11743108 | 3 |   |   | AF254822 | 11565138 | 3 | 36814 | 0 | 0 | 36814 |
| S/G/Y/R/B/O |
NT_011176 | AC011485 | 11773842 | 3 | chr19 | NT_011176 | AC009000 | 11901155 | 3 | 11433 | 0 | 0 | 11433 |
| S/G/Y/R/B/O |
NT_011176 | AC011485 | 11773842 | 3 |   |   | AF217403 | 11901155 | 3 | 33462 | 0 | 0 | 33462 |
| S/G/Y/R/B/O |
NT_011176 | AC011485 | 11773842 | 3 |   |   | AF254822 | 11901155 | 3 | 11751 | 0 | 0 | 11751 |
| S/G/Y/R/B/O |
NT_011176 | AC009000 | 11901155 | 3 | chr19 | NT_011176 | AC011472 | 11926817 | 3 | 3163 | 0 | 0 | 3163 |
| S/G/Y/R/B/O |
NT_011176 | AC011472 | 11926817 | 3 | chr19 | NT_011176 | AC098777 | 12045959 | 3 | 0 | 1616 | 0 | 1616 |
| S/G/Y/R/B/O |
NT_011176 | AC011472 | 11926817 | 3 |   |   | AC020561 | 11901155 | 1 | 43384 | 1935 | 5638 | 50957 |
| S/G/Y/R/B/O |
NT_011176 | AC098777 | 12045959 | 3 | chr19 | NT_011176 | AC024575 | 12047023 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011176 | AC024575 | 12047023 | 3 | chr19 | NT_011176 | AC008481 | 12137372 | 3 | 27928 | 0 | 0 | 27928 |
| S/G/Y/R/B/O |
NT_011176 | AC024575 | 12047023 | 3 |   |   | AC018782 | 12137372 | 1 | 62175 | 9595 | 14278 | 86048 |
| S/G/Y/R/B/O |
NT_011176 | AC024575 | 12047023 | 3 |   |   | AC020561 | 12137372 | 1 | 89240 | 6236 | 11048 | 106524 |
| S/G/Y/R/B/O |
NT_011176 | AC008481 | 12137372 | 3 | chr19 | NT_011176 | AC009001 | 12280017 | 3 | 3964 | 0 | 0 | 3964 |
| S/G/Y/R/B/O |
NT_011176 | AC008481 | 12137372 | 3 |   |   | AC018782 | 12280017 | 1 | 44473 | 13510 | 9240 | 67223 |
| S/G/Y/R/B/O |
NT_011176 | AC008481 | 12137372 | 3 |   |   | AC020561 | 12280017 | 1 | 51447 | 0 | 7334 | 58781 |
| S/G/Y/R/B/O |
NT_011176 | AC009001 | 12280017 | 3 | chr19 | NT_011176 | AC020947 | 12317960 | 3 | 22910 | 0 | 0 | 22910 |
| S/G/Y/R/B/O |
NT_011176 | AC020947 | 12317960 | 3 | chr19 | NT_011176 | AC104527 | 12331888 | 3 | 21556 | 0 | 0 | 21556 |
| S/G/Y/R/B/O |
NT_011176 | AC020947 | 12317960 | 3 |   |   | AC074126 | 12280017 | 1 | 13070 | 0 | 0 | 13070 |
| S/G/Y/R/B/O |
NT_011176 | AC104527 | 12331888 | 3 | chr19 | NT_011176 | AC008543 | 12357313 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011176 | AC104527 | 12331888 | 3 |   |   | AC074126 | 12317960 | 1 | 29753 | 0 | 3346 | 33099 |
| S/G/Y/R/B/O |
NT_011176 | AC008543 | 12357313 | 3 | chr19 | NT_011176 | AC020951 | 12576104 | 3 | 20541 | 0 | 0 | 20541 |
| S/G/Y/R/B/O |
NT_011176 | AC008543 | 12357313 | 3 |   |   | AC067963 | 12576104 | 1 | 49673 | 7055 | 44153 | 100881 |
| S/G/Y/R/B/O |
NT_011176 | AC008543 | 12357313 | 3 |   |   | AC069149 | 12576104 | 1 | 34043 | 3657 | 1454 | 39154 |
| S/G/Y/R/B/O |
NT_011176 | AC008543 | 12357313 | 3 |   |   | AC074126 | 12576104 | 1 | 18689 | 0 | 35912 | 54601 |
| S/G/Y/R/B/O |
NT_011176 | AC020951 | 12576104 | 3 | chr19 | NT_011176 | AC008770 | 12591270 | 3 | 13350 | 0 | 0 | 13350 |
| S/G/Y/R/B/O |
NT_011176 | AC020951 | 12576104 | 3 |   |   | AC009397 | 12591270 | 1 | 20059 | 0 | 0 | 20059 |
| S/G/Y/R/B/O |
NT_011176 | AC020951 | 12576104 | 3 |   |   | AC069149 | 12591270 | 1 | 33240 | 1707 | 0 | 34947 |
| S/G/Y/R/B/O |
NT_011176 | AC008770 | 12591270 | 3 | chr19 | NT_011176 | AC022415 | 12756101 | 3 | 27566 | 0 | 0 | 27566 |
| S/G/Y/R/B/O |
NT_011176 | AC008770 | 12591270 | 3 |   |   | AC009397 | 12591270 | 1 | 28015 | 0 | 0 | 28015 |
| S/G/Y/R/B/O |
NT_011176 | AC008770 | 12591270 | 3 |   |   | AC069149 | 12756101 | 1 | 107153 | 2810 | 3322 | 113285 |
| S/G/Y/R/B/O |
NT_011176 | AC022415 | 12756101 | 3 | chr19 | NT_011176 | AC012618 | 12909035 | 3 | 3722 | 0 | 0 | 3722 |
| S/G/Y/R/B/O |
NT_011176 | AC022415 | 12756101 | 3 |   |   | AC062036 | 12909035 | 1 | 57155 | 0 | 0 | 57155 |
| S/G/Y/R/B/O |
NT_011176 | AC012618 | 12909035 | 3 | chr19 | NT_011176 | AC008758 | 13064764 | 3 | 50919 | 0 | 0 | 50919 |
| S/G/Y/R/B/O |
NT_011176 | AC012618 | 12909035 | 3 |   |   | AC062036 | 116515747 | 1 | 118571 | 0 | 2523 | 121094 |
| S/G/Y/R/B/O |
NT_011176 | AC008758 | 13064764 | 3 | chr19 | NT_011176 | AC010422 | 13238411 | 3 | 34739 | 0 | 0 | 34739 |
| S/G/Y/R/B/O |
NT_011176 | AC010422 | 13238411 | 3 | chr19 | NT_011176 | AC018761 | 13407462 | 3 | 30810 | 0 | 0 | 30810 |
| S/G/Y/R/B/O |
NT_011176 | AC018761 | 13407462 | 3 | chr19 | NT_011176 | AC020934 | 13524402 | 3 | 37948 | 0 | 0 | 37948 |
| S/G/Y/R/B/O |
NT_011176 | AC020934 | 13524402 | 3 | chr19 | NT_011176 | AD000092 | 13605794 | 3 | 30948 | 0 | 0 | 30948 |
| S/G/Y/R/B/O |
NT_011176 | AD000092 | 13605794 | 3 | chr19 | NT_011176 | AC092069 | 13684932 | 3 | 55410 | 0 | 0 | 55410 |
| S/G/Y/R/B/O |
NT_011176 | AD000092 | 13605794 | 3 |   |   | AC092329 | 13684932 | 1 | 20462 | 0 | 5765 | 26227 |
| S/G/Y/R/B/O |
NT_011176 | AC092069 | 13684932 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011176 | AC092069 | 13684932 | 3 |   |   | AC092329 | 13684932 | 1 | 20476 | 0 | 8871 | 29347 |
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