|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011274 | AC005788 | 5821998 | 3 | chr19 | NT_011274 | AC005338 | 5858222 | 3 | 7136 | 0 | 0 | 7136 |
| S/G/Y/R/B/O |
NT_011274 | AC005338 | 5858222 | 3 | chr19 | NT_011274 | AC005790 | 5885627 | 3 | 2236 | 0 | 0 | 2236 |
| S/G/Y/R/B/O |
NT_011274 | AC005790 | 5885627 | 3 | chr19 | NT_011274 | AC005335 | 5922630 | 3 | 6233 | 0 | 0 | 6233 |
| S/G/Y/R/B/O |
NT_011274 | AC005335 | 5922630 | 3 | chr19 | NT_011274 | AC011490 | 5963400 | 3 | 10953 | 0 | 0 | 10953 |
| S/G/Y/R/B/O |
NT_011274 | AC011490 | 5963400 | 3 | chr19 | NT_011274 | AC005764 | 6067723 | 3 | 10253 | 0 | 0 | 10253 |
| S/G/Y/R/B/O |
NT_011274 | AC011490 | 5963400 | 3 | chr19 | NT_011274 | AC023217 | 6241758 | 1 | 26278 | 2545 | 2048 | 30871 |
| S/G/Y/R/B/O |
NT_011274 | AC005764 | 6067723 | 3 | chr19 | NT_011274 | AC004560 | 6095499 | 3 | 8040 | 0 | 0 | 8040 |
| S/G/Y/R/B/O |
NT_011274 | AC005764 | 6067723 | 3 | chr19 | NT_011274 | AC023217 | 6241758 | 1 | 25352 | 4686 | 1041 | 31079 |
| S/G/Y/R/B/O |
NT_011274 | AC004560 | 6095499 | 3 | chr19 | NT_011274 | AC005765 | 6130140 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011274 | AC004560 | 6095499 | 3 | chr19 | NT_011274 | AC023217 | 6241758 | 1 | 21490 | 6016 | 1358 | 28864 |
| S/G/Y/R/B/O |
NT_011274 | AC005765 | 6130140 | 3 | chr19 | NT_011274 | AC011533 | 6164634 | 3 | 12437 | 0 | 0 | 12437 |
| S/G/Y/R/B/O |
NT_011274 | AC005765 | 6130140 | 3 | chr19 | NT_011274 | AC023217 | 6241758 | 1 | 21395 | 1557 | 2752 | 25704 |
| S/G/Y/R/B/O |
NT_011274 | AC011533 | 6164634 | 3 | chr19 | NT_011274 | AC093059 | 6192142 | 3 | 0 | 1328 | 0 | 1328 |
| S/G/Y/R/B/O |
NT_011274 | AC093059 | 6192142 | 3 | chr19 | NT_011274 | AC004611 | 6195866 | 3 | 0 | 1263 | 0 | 1263 |
| S/G/Y/R/B/O |
NT_011274 | AC004611 | 6195866 | 3 | chr19 | NT_011274 | AC023217 | 6241758 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011274 | AC004611 | 6195866 | 3 |   |   | AL356352 | 6192142 | 1 | 26675 | 0 | 0 | 26675 |
| S/G/Y/R/B/O |
NT_011274 | AC023217 | 6241758 | 1 | chr19 | NT_011274 | AC011491 | 6252123 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011274 | AC023217 | 6241758 | 1 | chr19 | NT_011274 | AC004560 | 6095499 | 3 | 21490 | 6016 | 1358 | 28864 |
| S/G/Y/R/B/O |
NT_011274 | AC023217 | 6241758 | 1 | chr19 | NT_011274 | AC005764 | 6067723 | 3 | 25352 | 4686 | 1041 | 31079 |
| S/G/Y/R/B/O |
NT_011274 | AC023217 | 6241758 | 1 | chr19 | NT_011274 | AC005765 | 6130140 | 3 | 21395 | 1557 | 2752 | 25704 |
| S/G/Y/R/B/O |
NT_011274 | AC023217 | 6241758 | 1 | chr19 | NT_011274 | AC011490 | 5963400 | 3 | 26278 | 2545 | 2048 | 30871 |
| S/G/Y/R/B/O |
NT_011274 | AC011491 | 6252123 | 3 | chr19 | NT_011274 | AC011539 | 6370942 | 2 | 2841 | 0 | 0 | 2841 |
| S/G/Y/R/B/O |
NT_011274 | AC011539 | 6370942 | 2 | chr19 | NT_011274 | AC025343 | 6383288 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011274 | AC011539 | 6370942 | 2 | chr19 | NT_011274 | AC010503 | 6400259 | 3 | 19357 | 0 | 0 | 19357 |
| S/G/Y/R/B/O |
NT_011274 | AC011539 | 6370942 | 2 |   |   | AC016331 | 6252123 | 1 | 18523 | 0 | 0 | 18523 |
| S/G/Y/R/B/O |
NT_011274 | AC025343 | 6383288 | 1 | chr19 | NT_011274 | AC010503 | 6400259 | 3 | 4544 | 0 | 0 | 4544 |
| S/G/Y/R/B/O |
NT_011274 | AC025343 | 6383288 | 1 | chr19 | NT_011274 | AC008760 | 6541554 | 3 | 112820 | 10210 | 25179 | 148209 |
| S/G/Y/R/B/O |
NT_011274 | AC025343 | 6383288 | 1 |   |   | AC027726 | 6728452 | 1 | 12819 | 3982 | 1180 | 17981 |
| S/G/Y/R/B/O |
NT_011274 | AC010503 | 6400259 | 3 | chr19 | NT_011274 | AC008760 | 6541554 | 3 | 13231 | 0 | 0 | 13231 |
| S/G/Y/R/B/O |
NT_011274 | AC010503 | 6400259 | 3 | chr19 | NT_011274 | AC011539 | 6370942 | 2 | 19357 | 0 | 0 | 19357 |
| S/G/Y/R/B/O |
NT_011274 | AC010503 | 6400259 | 3 |   |   | AC016331 | 6370942 | 1 | 65062 | 6993 | 11396 | 83451 |
| S/G/Y/R/B/O |
NT_011274 | AC008760 | 6541554 | 3 | chr19 | NT_011274 | AC020954 | 6728452 | 3 | 14843 | 0 | 0 | 14843 |
| S/G/Y/R/B/O |
NT_011274 | AC008760 | 6541554 | 3 | chr19 | NT_011274 | AC025343 | 6383288 | 1 | 112820 | 10210 | 25179 | 148209 |
| S/G/Y/R/B/O |
NT_011274 | AC008760 | 6541554 | 3 |   |   | AC008576 | 6383288 | 1 | 11370 | 1226 | 5524 | 18120 |
| S/G/Y/R/B/O |
NT_011274 | AC008760 | 6541554 | 3 |   |   | AC027726 | 6383288 | 1 | 14708 | 3989 | 1180 | 19877 |
| S/G/Y/R/B/O |
NT_011274 | AC020954 | 6728452 | 3 | chr19 | NT_011274 | AC022156 | 6753463 | 3 | 12764 | 0 | 0 | 12764 |
| S/G/Y/R/B/O |
NT_011274 | AC020954 | 6728452 | 3 |   |   | AC008576 | 6383288 | 1 | 10265 | 2548 | 17887 | 30700 |
| S/G/Y/R/B/O |
NT_011274 | AC020954 | 6728452 | 3 |   |   | AC027726 | 6383288 | 1 | 25551 | 0 | 5188 | 30739 |
| S/G/Y/R/B/O |
NT_011274 | AC022156 | 6753463 | 3 | chr19 | NT_011274 | AC010647 | 6774630 | 3 | 4113 | 0 | 0 | 4113 |
| S/G/Y/R/B/O |
NT_011274 | AC022156 | 6753463 | 3 | chr19 | NT_011274 | AC011499 | 6959928 | 1 | 33892 | 0 | 0 | 33892 |
| S/G/Y/R/B/O |
NT_011274 | AC022156 | 6753463 | 3 |   |   | AC008576 | 6383288 | 1 | 21069 | 1736 | 5026 | 27831 |
| S/G/Y/R/B/O |
NT_011274 | AC010647 | 6774630 | 3 | chr19 | NT_011274 | AC020895 | 6810619 | 3 | 5940 | 0 | 0 | 5940 |
| S/G/Y/R/B/O |
NT_011274 | AC020895 | 6810619 | 3 | chr19 | NT_011274 | AC025278 | 6944518 | 1 | 63374 | 0 | 0 | 63374 |
| S/G/Y/R/B/O |
NT_011274 | AC020895 | 6810619 | 3 |   |   | AC008576 | 6753463 | 1 | 29254 | 8375 | 41624 | 79253 |
| S/G/Y/R/B/O |
NT_011274 | AC020895 | 6810619 | 3 |   |   | AC027726 | 6944518 | 1 | 39011 | 3543 | 1135 | 43689 |
| S/G/Y/R/B/O |
NT_011274 | AC025278 | 6944518 | 1 | chr19 | NT_011274 | AC021165 | 6947181 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011274 | AC021165 | 6947181 | 1 | chr19 | NT_011274 | AC011499 | 6959928 | 1 | 7985 | 2821 | 2723 | 13529 |
| S/G/Y/R/B/O |
NT_011274 | AC021165 | 6947181 | 1 | chr19 | NT_011274 | AC004602 | 7276369 | 3 | 34731 | 0 | 0 | 34731 |
| S/G/Y/R/B/O |
NT_011274 | AC011499 | 6959928 | 1 | chr19 | NT_011274 | AC011444 | 7106594 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011274 | AC011499 | 6959928 | 1 | chr19 | NT_011274 | AC022156 | 6753463 | 3 | 33892 | 0 | 0 | 33892 |
| S/G/Y/R/B/O |
NT_011274 | AC011499 | 6959928 | 1 |   |   | AC008576 | 7308957 | 1 | 15722 | 1736 | 10215 | 27673 |
| S/G/Y/R/B/O |
NT_011274 | AC011499 | 6959928 | 1 |   |   | AL356352 | 7323320 | 1 | 89167 | 4053 | 2437 | 95657 |
| S/G/Y/R/B/O |
NT_011274 | AC011444 | 7106594 | 3 | chr19 | NT_011274 | AC005784 | 7226991 | 3 | 13506 | 0 | 0 | 13506 |
| S/G/Y/R/B/O |
NT_011274 | AC011444 | 7106594 | 3 |   |   | AL159157 | 7226991 | 1 | 14435 | 0 | 29351 | 43786 |
| S/G/Y/R/B/O |
NT_011274 | AC005784 | 7226991 | 3 | chr19 | NT_011274 | AC093050 | 7269045 | 3 | 0 | 1217 | 0 | 1217 |
| S/G/Y/R/B/O |
NT_011274 | AC093050 | 7269045 | 3 | chr19 | NT_011274 | AC004602 | 7276369 | 3 | 0 | 1226 | 0 | 1226 |
| S/G/Y/R/B/O |
NT_011274 | AC004602 | 7276369 | 3 | chr19 | NT_011274 | AC104532 | 7308957 | 3 | 9984 | 0 | 0 | 9984 |
| S/G/Y/R/B/O |
NT_011274 | AC004602 | 7276369 | 3 | chr19 | NT_011274 | AC021165 | 6947181 | 1 | 34731 | 0 | 0 | 34731 |
| S/G/Y/R/B/O |
NT_011274 | AC104532 | 7308957 | 3 | chr19 | NT_011274 | AC024592 | 7323320 | 3 | 0 | 0 | 1862 | 1862 |
| S/G/Y/R/B/O |
NT_011274 | AC024592 | 7323320 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011274 | AC024592 | 7323320 | 3 |   |   | AC010454 | 7323320 | 1 | 74233 | 0 | 0 | 74233 |
| |
|
|
|