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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011192 | AC092296 | 49581755 | 1 | chr19 | NT_011192 | AC092295 | 49607871 | 3 | 43758 | 0 | 15478 | 59236 |
| S/G/Y/R/B/O |
NT_011192 | AC092296 | 49581755 | 1 | chr19 | NT_011192 | AC012617 | 50555447 | 1 | 19465 | 0 | 8583 | 28048 |
| S/G/Y/R/B/O |
NT_011192 | AC092296 | 49581755 | 1 | chr19 | NT_011192 | AC068373 | 50443178 | 1 | 81965 | 17763 | 20668 | 120396 |
| S/G/Y/R/B/O |
NT_011192 | AC092296 | 49581755 | 1 |   |   | AC009756 | 49468827 | 3 | 49414 | 0 | 15451 | 64865 |
| S/G/Y/R/B/O |
NT_011192 | AC092295 | 49607871 | 3 | chr19 | NT_011192 | AC074138 | 49773437 | 3 | 72745 | 0 | 0 | 72745 |
| S/G/Y/R/B/O |
NT_011192 | AC092295 | 49607871 | 3 | chr19 | NT_011192 | AC068373 | 50443178 | 1 | 53679 | 12213 | 7187 | 73079 |
| S/G/Y/R/B/O |
NT_011192 | AC092295 | 49607871 | 3 |   |   | AC009756 | 50545771 | 3 | 164846 | 0 | 0 | 164846 |
| S/G/Y/R/B/O |
NT_011192 | AC074138 | 49773437 | 3 | chr19 | NT_011192 | AC020928 | 49901000 | 3 | 7403 | 0 | 0 | 7403 |
| S/G/Y/R/B/O |
NT_011192 | AC074138 | 49773437 | 3 |   |   | AC009756 | 49581755 | 3 | 80348 | 0 | 0 | 80348 |
| S/G/Y/R/B/O |
NT_011192 | AC074138 | 49773437 | 3 |   |   | AC073266 | 49901000 | 1 | 69142 | 1683 | 27017 | 97842 |
| S/G/Y/R/B/O |
NT_011192 | AC020928 | 49901000 | 3 | chr19 | NT_011192 | AC008733 | 50003254 | 3 | 22834 | 0 | 0 | 22834 |
| S/G/Y/R/B/O |
NT_011192 | AC020928 | 49901000 | 3 |   |   | AC008375 | 49607871 | 2 | 17372 | 1940 | 906 | 20218 |
| S/G/Y/R/B/O |
NT_011192 | AC020928 | 49901000 | 3 |   |   | AC073266 | 50003254 | 1 | 14443 | 6334 | 38310 | 59087 |
| S/G/Y/R/B/O |
NT_011192 | AC020928 | 49901000 | 3 |   |   | AC073640 | 50003254 | 1 | 66201 | 0 | 15908 | 82109 |
| S/G/Y/R/B/O |
NT_011192 | AC008733 | 50003254 | 3 | chr19 | NT_011192 | AC010632 | 50169892 | 3 | 11274 | 0 | 0 | 11274 |
| S/G/Y/R/B/O |
NT_011192 | AC008733 | 50003254 | 3 |   |   | AC008375 | 49773437 | 2 | 59189 | 11890 | 4824 | 75903 |
| S/G/Y/R/B/O |
NT_011192 | AC008733 | 50003254 | 3 |   |   | AC009194 | 49773437 | 3 | 158973 | 0 | 0 | 158973 |
| S/G/Y/R/B/O |
NT_011192 | AC008733 | 50003254 | 3 |   |   | AC017110 | 50169892 | 1 | 96693 | 1863 | 9431 | 107987 |
| S/G/Y/R/B/O |
NT_011192 | AC008733 | 50003254 | 3 |   |   | AC073640 | 49901000 | 1 | 107561 | 0 | 17112 | 124673 |
| S/G/Y/R/B/O |
NT_011192 | AC010632 | 50169892 | 3 | chr19 | NT_011192 | AC012309 | 50269839 | 3 | 30183 | 0 | 0 | 30183 |
| S/G/Y/R/B/O |
NT_011192 | AC010632 | 50169892 | 3 |   |   | AC009194 | 50003254 | 3 | 30970 | 0 | 0 | 30970 |
| S/G/Y/R/B/O |
NT_011192 | AC010632 | 50169892 | 3 |   |   | AC068942 | 50269839 | 1 | 31631 | 4119 | 15135 | 50885 |
| S/G/Y/R/B/O |
NT_011192 | AC012309 | 50269839 | 3 | chr19 | NT_011192 | AC099492 | 50409673 | 1 | 6999 | 0 | 0 | 6999 |
| S/G/Y/R/B/O |
NT_011192 | AC012309 | 50269839 | 3 |   |   | AC016590 | 50169892 | 1 | 39329 | 6830 | 12722 | 58881 |
| S/G/Y/R/B/O |
NT_011192 | AC012309 | 50269839 | 3 |   |   | AC068942 | 50169892 | 1 | 75249 | 23258 | 28883 | 127390 |
| S/G/Y/R/B/O |
NT_011192 | AC099492 | 50409673 | 1 | chr19 | NT_011192 | AC068373 | 50443178 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011192 | AC068373 | 50443178 | 1 | chr19 | NT_011192 | AC093238 | 50545771 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011192 | AC068373 | 50443178 | 1 | chr19 | NT_011192 | AC092295 | 49607871 | 3 | 53679 | 12213 | 7187 | 73079 |
| S/G/Y/R/B/O |
NT_011192 | AC068373 | 50443178 | 1 | chr19 | NT_011192 | AC092296 | 49581755 | 1 | 81965 | 17763 | 20668 | 120396 |
| S/G/Y/R/B/O |
NT_011192 | AC068373 | 50443178 | 1 |   |   | AC009756 | 50269839 | 3 | 38880 | 10952 | 4060 | 53892 |
| S/G/Y/R/B/O |
NT_011192 | AC093238 | 50545771 | 1 | chr19 | NT_011192 | AC012617 | 50555447 | 1 | 13751 | 0 | 0 | 13751 |
| S/G/Y/R/B/O |
NT_011192 | AC012617 | 50555447 | 1 | chr19 | NT_011192 | AC008848 | 50565096 | 3 | 17905 | 0 | 0 | 17905 |
| S/G/Y/R/B/O |
NT_011192 | AC012617 | 50555447 | 1 | chr19 | NT_011192 | AC092296 | 49581755 | 1 | 19465 | 0 | 8583 | 28048 |
| S/G/Y/R/B/O |
NT_011192 | AC012617 | 50555447 | 1 | chr19 | NT_011192 | AC093231 | 50638492 | 3 | 35272 | 1768 | 0 | 37040 |
| S/G/Y/R/B/O |
NT_011192 | AC008848 | 50565096 | 3 | chr19 | NT_011192 | AC093231 | 50638492 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011192 | AC008848 | 50565096 | 3 | chr19 | NT_011296 | AC002984 | 49507886 | 3 | 17921 | 0 | 0 | 17921 |
| S/G/Y/R/B/O |
NT_011192 | AC093231 | 50638492 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011192 | AC093231 | 50638492 | 3 | chr19 | NT_011192 | AC012617 | 50555447 | 1 | 35272 | 1768 | 0 | 37040 |
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