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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011145 | AC010606 | 7776336 | 1 | chr19 | NT_011145 | AC022146 | 7779734 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011145 | AC022146 | 7779734 | 1 | chr19 | NT_011145 | AC092304 | 7786465 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011145 | AC022146 | 7779734 | 1 | chr19 | NT_011145 | AC092310 | 8212622 | 3 | 15471 | 0 | 0 | 15471 |
| S/G/Y/R/B/O |
NT_011145 | AC022146 | 7779734 | 1 | chr19 | NT_011145 | AC114799 | 8131371 | 1 | 24489 | 13756 | 16616 | 54861 |
| S/G/Y/R/B/O |
NT_011145 | AC022146 | 7779734 | 1 |   |   | AC092302 | 7786465 | 3 | 35076 | 0 | 0 | 35076 |
| S/G/Y/R/B/O |
NT_011145 | AC022146 | 7779734 | 1 |   |   | AC093233 | 8212622 | 1 | 15471 | 0 | 0 | 15471 |
| S/G/Y/R/B/O |
NT_011145 | AC092304 | 7786465 | 1 | chr19 | NT_011145 | AC010311 | 7838340 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011145 | AC010311 | 7838340 | 3 | chr19 | NT_011145 | AC010526 | 7929512 | 3 | 11367 | 0 | 0 | 11367 |
| S/G/Y/R/B/O |
NT_011145 | AC010311 | 7838340 | 3 |   |   | AC092305 | 7776336 | 3 | 20422 | 0 | 0 | 20422 |
| S/G/Y/R/B/O |
NT_011145 | AC010526 | 7929512 | 3 | chr19 | NT_011145 | AC010324 | 7955630 | 1 | 2993 | 0 | 0 | 2993 |
| S/G/Y/R/B/O |
NT_011145 | AC010324 | 7955630 | 1 | chr19 | NT_011145 | AC114799 | 8131371 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011145 | AC114799 | 8131371 | 1 | chr19 | NT_011145 | AC092310 | 8212622 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011145 | AC114799 | 8131371 | 1 | chr19 | NT_011145 | AC008946 | 8883789 | 3 | 18210 | 13210 | 11417 | 42837 |
| S/G/Y/R/B/O |
NT_011145 | AC114799 | 8131371 | 1 | chr19 | NT_011145 | AC008975 | 8855553 | 3 | 10837 | 4054 | 0 | 14891 |
| S/G/Y/R/B/O |
NT_011145 | AC114799 | 8131371 | 1 | chr19 | NT_011145 | AC022146 | 7779734 | 1 | 24489 | 13756 | 16616 | 54861 |
| S/G/Y/R/B/O |
NT_011145 | AC092310 | 8212622 | 3 | chr19 | NT_011145 | AC008878 | 8260272 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011145 | AC092310 | 8212622 | 3 | chr19 | NT_011145 | AC022146 | 7779734 | 1 | 15471 | 0 | 0 | 15471 |
| S/G/Y/R/B/O |
NT_011145 | AC092310 | 8212622 | 3 |   |   | AC010323 | 7779734 | 1 | 45013 | 0 | 0 | 45013 |
| S/G/Y/R/B/O |
NT_011145 | AC092310 | 8212622 | 3 |   |   | AC093233 | 7779734 | 1 | 47090 | 0 | 0 | 47090 |
| S/G/Y/R/B/O |
NT_011145 | AC008878 | 8260272 | 2 | chr19 | NT_011145 | AC009003 | 8407672 | 3 | 27935 | 0 | 0 | 27935 |
| S/G/Y/R/B/O |
NT_011145 | AC008878 | 8260272 | 2 | chr19 | NT_011145 | AC021153 | 8444860 | 1 | 22051 | 0 | 30034 | 52085 |
| S/G/Y/R/B/O |
NT_011145 | AC008878 | 8260272 | 2 |   |   | AF287270 | 8444860 | 3 | 13265 | 0 | 0 | 13265 |
| S/G/Y/R/B/O |
NT_011145 | AC009003 | 8407672 | 3 | chr19 | NT_011145 | AC021153 | 8444860 | 1 | 10273 | 0 | 24894 | 35167 |
| S/G/Y/R/B/O |
NT_011145 | AC021153 | 8444860 | 1 | chr19 | NT_011145 | AC008763 | 8454176 | 2 | 49430 | 5478 | 27502 | 82410 |
| S/G/Y/R/B/O |
NT_011145 | AC021153 | 8444860 | 1 | chr19 | NT_011145 | AC008878 | 8260272 | 2 | 22051 | 0 | 30034 | 52085 |
| S/G/Y/R/B/O |
NT_011145 | AC021153 | 8444860 | 1 |   |   | AF287270 | 8407672 | 3 | 13220 | 0 | 0 | 13220 |
| S/G/Y/R/B/O |
NT_011145 | AC008763 | 8454176 | 2 | chr19 | NT_011145 | AC008812 | 8572885 | 3 | 50258 | 0 | 0 | 50258 |
| S/G/Y/R/B/O |
NT_011145 | AC008812 | 8572885 | 3 | chr19 | NT_011145 | AC010336 | 8716504 | 3 | 21720 | 0 | 0 | 21720 |
| S/G/Y/R/B/O |
NT_011145 | AC008812 | 8572885 | 3 |   |   | AC024700 | 8716504 | 1 | 47180 | 0 | 26098 | 73278 |
| S/G/Y/R/B/O |
NT_011145 | AC010336 | 8716504 | 3 | chr19 | NT_011145 | AC008975 | 8855553 | 3 | 11340 | 0 | 0 | 11340 |
| S/G/Y/R/B/O |
NT_011145 | AC010336 | 8716504 | 3 |   |   | AC024700 | 8855553 | 1 | 60851 | 2235 | 49362 | 112448 |
| S/G/Y/R/B/O |
NT_011145 | AC008975 | 8855553 | 3 | chr19 | NT_011145 | AC008946 | 8883789 | 3 | 12541 | 0 | 0 | 12541 |
| S/G/Y/R/B/O |
NT_011145 | AC008975 | 8855553 | 3 | chr19 | NT_011145 | AC114799 | 8131371 | 1 | 10837 | 4054 | 0 | 14891 |
| S/G/Y/R/B/O |
NT_011145 | AC008946 | 8883789 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011145 | AC008946 | 8883789 | 3 | chr19 | NT_011145 | AC114799 | 8131371 | 1 | 18210 | 13210 | 11417 | 42837 |
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