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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_026483 | AC011447 | 21600759 | 2 | chr19 | NT_026483 | AC078899 | 21735626 | 3 | 30716 | 0 | 0 | 30716 |
| S/G/Y/R/B/O |
NT_026483 | AC078899 | 21735626 | 3 | chr19 | NT_026483 | AC008554 | 21933538 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026483 | AC008554 | 21933538 | 3 | chr19 | NT_026483 | AC010636 | 22078414 | 3 | 73425 | 0 | 0 | 73425 |
| S/G/Y/R/B/O |
NT_026483 | AC010636 | 22078414 | 3 | chr19 | NT_026483 | AC010329 | 22184072 | 3 | 12431 | 0 | 0 | 12431 |
| S/G/Y/R/B/O |
NT_026483 | AC010329 | 22184072 | 3 | chr19 | NT_026483 | AC008739 | 22359216 | 3 | 31434 | 0 | 0 | 31434 |
| S/G/Y/R/B/O |
NT_026483 | AC008739 | 22359216 | 3 | chr19 | NT_026483 | AC012627 | 22563313 | 3 | 26017 | 0 | 0 | 26017 |
| S/G/Y/R/B/O |
NT_026483 | AC012627 | 22563313 | 3 | chr19 | NT_026483 | AC010620 | 22638221 | 3 | 15495 | 0 | 0 | 15495 |
| S/G/Y/R/B/O |
NT_026483 | AC010620 | 22638221 | 3 | chr19 | NT_026483 | AC006485 | 22779561 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026483 | AC010620 | 22638221 | 3 |   |   | AC008990 | 22638221 | 3 | 35980 | 0 | 0 | 35980 |
| S/G/Y/R/B/O |
NT_026483 | AC010620 | 22638221 | 3 |   |   | AC009006 | 22638221 | 3 | 37218 | 0 | 0 | 37218 |
| S/G/Y/R/B/O |
NT_026483 | AC010620 | 22638221 | 3 |   |   | AL355541 | 22563313 | 1 | 25680 | 0 | 0 | 25680 |
| S/G/Y/R/B/O |
NT_026483 | AC010620 | 22638221 | 3 |   |   | AL391424 | 22563313 | 1 | 59023 | 0 | 0 | 59023 |
| S/G/Y/R/B/O |
NT_026483 | AC006485 | 22779561 | 3 | chr19 | NT_026483 | AC022432 | 22808082 | 3 | 0 | 0 | 15191 | 15191 |
| S/G/Y/R/B/O |
NT_026483 | AC006485 | 22779561 | 3 |   |   | AL355541 | 22808082 | 1 | 32315 | 0 | 0 | 32315 |
| S/G/Y/R/B/O |
NT_026483 | AC006485 | 22779561 | 3 |   |   | AL391424 | 22808082 | 1 | 30323 | 0 | 0 | 30323 |
| S/G/Y/R/B/O |
NT_026483 | AC022432 | 22808082 | 3 | chr19 | NT_026483 | AC010615 | 22894950 | 3 | 29691 | 0 | 0 | 29691 |
| S/G/Y/R/B/O |
NT_026483 | AC022432 | 22808082 | 3 |   |   | AC092345 | 22894950 | 1 | 22262 | 0 | 67469 | 89731 |
| S/G/Y/R/B/O |
NT_026483 | AC022432 | 22808082 | 3 |   |   | AL355541 | 22894950 | 1 | 56501 | 0 | 6875 | 63376 |
| S/G/Y/R/B/O |
NT_026483 | AC010615 | 22894950 | 3 | chr19 | NT_026483 | AC068624 | 23081221 | 1 | 5781 | 0 | 4346 | 10127 |
| S/G/Y/R/B/O |
NT_026483 | AC010615 | 22894950 | 3 |   |   | AC026487 | 22808082 | 1 | 96099 | 18713 | 25612 | 140424 |
| S/G/Y/R/B/O |
NT_026483 | AC010615 | 22894950 | 3 |   |   | AC092345 | 23081221 | 1 | 66757 | 1836 | 6418 | 75011 |
| S/G/Y/R/B/O |
NT_026483 | AC068624 | 23081221 | 1 | chr19 | NT_026483 | AC092364 | 23142558 | 3 | 40679 | 13021 | 11473 | 65173 |
| S/G/Y/R/B/O |
NT_026483 | AC068624 | 23081221 | 1 |   |   | AC026487 | 22894950 | 1 | 17600 | 0 | 0 | 17600 |
| S/G/Y/R/B/O |
NT_026483 | AC092364 | 23142558 | 3 | chr19 | NT_026483 | AC010617 | 23302821 | 2 | 0 | 426 | 0 | 426 |
| S/G/Y/R/B/O |
NT_026483 | AC010617 | 23302821 | 2 | chr19 | NT_026483 | AC020700 | 23354961 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026483 | AC010617 | 23302821 | 2 | chr19 | NT_026483 | AC041049 | 24708538 | 1 | 56782 | 3413 | 27902 | 88097 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 | chr19 | NT_026483 | AC003973 | 23399740 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 | chr19 | NT_026483 | AC011482 | 23542585 | 3 | 32089 | 0 | 1494 | 33583 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 | chr19 | NT_026483 | AC011494 | 23787327 | 3 | 15257 | 2079 | 3441 | 20777 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 | chr19 | NT_026483 | AC073539 | 23627832 | 3 | 130542 | 2079 | 18489 | 151110 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 |   |   | AC004026 | 23142558 | 3 | 19643 | 0 | 2946 | 22589 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 |   |   | AC008995 | 23142558 | 3 | 28883 | 2071 | 0 | 30954 |
| S/G/Y/R/B/O |
NT_026483 | AC020700 | 23354961 | 1 |   |   | AC008996 | 23142558 | 3 | 20749 | 0 | 0 | 20749 |
| S/G/Y/R/B/O |
NT_026483 | AC003973 | 23399740 | 3 | chr19 | NT_026483 | AC011482 | 23542585 | 3 | 22278 | 0 | 0 | 22278 |
| S/G/Y/R/B/O |
NT_026483 | AC003973 | 23399740 | 3 | chr19 | NT_026483 | AC041049 | 24708538 | 1 | 43232 | 0 | 27469 | 70701 |
| S/G/Y/R/B/O |
NT_026483 | AC003973 | 23399740 | 3 |   |   | AC010520 | 23627832 | 3 | 37637 | 0 | 0 | 37637 |
| S/G/Y/R/B/O |
NT_026483 | AC011482 | 23542585 | 3 | chr19 | NT_026483 | AC073539 | 23627832 | 3 | 43854 | 0 | 0 | 43854 |
| S/G/Y/R/B/O |
NT_026483 | AC011482 | 23542585 | 3 | chr19 | NT_026483 | AC020700 | 23354961 | 1 | 32089 | 0 | 1494 | 33583 |
| S/G/Y/R/B/O |
NT_026483 | AC073539 | 23627832 | 3 | chr19 | NT_026483 | AC011494 | 23787327 | 3 | 24698 | 0 | 0 | 24698 |
| S/G/Y/R/B/O |
NT_026483 | AC073539 | 23627832 | 3 | chr19 | NT_026483 | AC020700 | 23354961 | 1 | 130542 | 2079 | 18489 | 151110 |
| S/G/Y/R/B/O |
NT_026483 | AC073539 | 23627832 | 3 |   |   | AC004026 | 23627832 | 3 | 36038 | 0 | 0 | 36038 |
| S/G/Y/R/B/O |
NT_026483 | AC073539 | 23627832 | 3 |   |   | AC008995 | 23627832 | 3 | 39260 | 0 | 0 | 39260 |
| S/G/Y/R/B/O |
NT_026483 | AC011494 | 23787327 | 3 | chr19 | NT_026483 | AC011516 | 23901185 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026483 | AC011494 | 23787327 | 3 | chr19 | NT_026483 | AC020700 | 23354961 | 1 | 15257 | 2079 | 3441 | 20777 |
| S/G/Y/R/B/O |
NT_026483 | AC011494 | 23787327 | 3 |   |   | AC008995 | 23354961 | 3 | 10340 | 0 | 0 | 10340 |
| S/G/Y/R/B/O |
NT_026483 | AC011516 | 23901185 | 3 | chr19 | NT_026483 | AC025811 | 23941199 | 3 | 6001 | 0 | 0 | 6001 |
| S/G/Y/R/B/O |
NT_026483 | AC011516 | 23901185 | 3 | chr19 | NT_026483 | AC090580 | 23975570 | 1 | 15293 | 0 | 20861 | 36154 |
| S/G/Y/R/B/O |
NT_026483 | AC011516 | 23901185 | 3 |   |   | AC036240 | 23941199 | 1 | 10610 | 0 | 0 | 10610 |
| S/G/Y/R/B/O |
NT_026483 | AC025811 | 23941199 | 3 | chr19 | NT_026483 | AC090580 | 23975570 | 1 | 33022 | 0 | 0 | 33022 |
| S/G/Y/R/B/O |
NT_026483 | AC025811 | 23941199 | 3 |   |   | AC036240 | 23901185 | 1 | 23254 | 0 | 7527 | 30781 |
| S/G/Y/R/B/O |
NT_026483 | AC090580 | 23975570 | 1 | chr19 | NT_026483 | AC011467 | 24081541 | 3 | 71461 | 0 | 0 | 71461 |
| S/G/Y/R/B/O |
NT_026483 | AC090580 | 23975570 | 1 | chr19 | NT_026483 | AC011516 | 23901185 | 3 | 15293 | 0 | 20861 | 36154 |
| S/G/Y/R/B/O |
NT_026483 | AC090580 | 23975570 | 1 |   |   | AC036240 | 53637787 | 1 | 28905 | 5880 | 10299 | 45084 |
| S/G/Y/R/B/O |
NT_026483 | AC011467 | 24081541 | 3 | chr19 | NT_026483 | AC024563 | 24107357 | 3 | 90484 | 0 | 0 | 90484 |
| S/G/Y/R/B/O |
NT_026483 | AC011467 | 24081541 | 3 |   |   | AC036240 | 53637787 | 1 | 37604 | 0 | 0 | 37604 |
| S/G/Y/R/B/O |
NT_026483 | AC024563 | 24107357 | 3 | chr19 | NT_026483 | AC008626 | 24265898 | 3 | 73816 | 0 | 0 | 73816 |
| S/G/Y/R/B/O |
NT_026483 | AC008626 | 24265898 | 3 | chr19 | NT_026483 | AC011521 | 24347513 | 3 | 37377 | 0 | 0 | 37377 |
| S/G/Y/R/B/O |
NT_026483 | AC008626 | 24265898 | 3 | chr19 | NT_026483 | AC022145 | 24349762 | 2 | 35756 | 0 | 0 | 35756 |
| S/G/Y/R/B/O |
NT_026483 | AC008626 | 24265898 | 3 |   |   | AC010318 | 24081541 | 2 | 10258 | 6870 | 11749 | 28877 |
| S/G/Y/R/B/O |
NT_026483 | AC011521 | 24347513 | 3 | chr19 | NT_026483 | AC022145 | 24349762 | 2 | 37896 | 0 | 0 | 37896 |
| S/G/Y/R/B/O |
NT_026483 | AC022145 | 24349762 | 2 | chr19 | NT_026483 | AC011502 | 24486716 | 3 | 44416 | 0 | 0 | 44416 |
| S/G/Y/R/B/O |
NT_026483 | AC022145 | 24349762 | 2 | chr19 | NT_026483 | AC008626 | 24265898 | 3 | 35756 | 0 | 0 | 35756 |
| S/G/Y/R/B/O |
NT_026483 | AC022145 | 24349762 | 2 | chr19 | NT_026483 | AC025886 | 24510973 | 1 | 61866 | 0 | 2220 | 64086 |
| S/G/Y/R/B/O |
NT_026483 | AC011502 | 24486716 | 3 | chr19 | NT_026483 | AC025886 | 24510973 | 1 | 67141 | 0 | 0 | 67141 |
| S/G/Y/R/B/O |
NT_026483 | AC011502 | 24486716 | 3 |   |   | AC091918 | 24510973 | 1 | 20693 | 0 | 0 | 20693 |
| S/G/Y/R/B/O |
NT_026483 | AC025886 | 24510973 | 1 | chr19 | NT_026483 | AC021910 | 24512888 | 1 | 69172 | 14962 | 6142 | 90276 |
| S/G/Y/R/B/O |
NT_026483 | AC025886 | 24510973 | 1 | chr19 | NT_026483 | AC008980 | 24515021 | 2 | 26382 | 2797 | 707 | 29886 |
| S/G/Y/R/B/O |
NT_026483 | AC025886 | 24510973 | 1 | chr19 | NT_026483 | AC022145 | 24349762 | 2 | 61866 | 0 | 2220 | 64086 |
| S/G/Y/R/B/O |
NT_026483 | AC025886 | 24510973 | 1 |   |   | AC091918 | 24593236 | 1 | 86134 | 0 | 8285 | 94419 |
| S/G/Y/R/B/O |
NT_026483 | AC021910 | 24512888 | 1 | chr19 | NT_026483 | AC008980 | 24515021 | 2 | 0 | 3115 | 389 | 3504 |
| S/G/Y/R/B/O |
NT_026483 | AC021910 | 24512888 | 1 | chr19 | NT_026483 | AC074135 | 24593236 | 1 | 12090 | 0 | 4295 | 16385 |
| S/G/Y/R/B/O |
NT_026483 | AC021910 | 24512888 | 1 |   |   | AC091918 | 24593236 | 1 | 61065 | 11950 | 5853 | 78868 |
| S/G/Y/R/B/O |
NT_026483 | AC008980 | 24515021 | 2 | chr19 | NT_026483 | AC074135 | 24593236 | 1 | 4958 | 0 | 0 | 4958 |
| S/G/Y/R/B/O |
NT_026483 | AC008980 | 24515021 | 2 | chr19 | NT_026483 | AC025886 | 24510973 | 1 | 26382 | 2797 | 707 | 29886 |
| S/G/Y/R/B/O |
NT_026483 | AC008980 | 24515021 | 2 |   |   | AC091918 | 24593236 | 1 | 18320 | 1809 | 710 | 20839 |
| S/G/Y/R/B/O |
NT_026483 | AC074135 | 24593236 | 1 | chr19 | NT_026483 | AC041049 | 24708538 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026483 | AC074135 | 24593236 | 1 | chr19 | NT_026483 | AC021910 | 24512888 | 1 | 12090 | 0 | 4295 | 16385 |
| S/G/Y/R/B/O |
NT_026483 | AC041049 | 24708538 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_026483 | AC041049 | 24708538 | 1 | chr19 | NT_026483 | AC003973 | 23399740 | 3 | 43232 | 0 | 27469 | 70701 |
| S/G/Y/R/B/O |
NT_026483 | AC041049 | 24708538 | 1 | chr19 | NT_026483 | AC010617 | 23302821 | 2 | 56782 | 3413 | 27902 | 88097 |
| S/G/Y/R/B/O |
NT_026483 | AC041049 | 24708538 | 1 |   |   | AC010520 | 23399740 | 3 | 16373 | 0 | 2621 | 18994 |
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