Home    Genome Browser    BLAT Search    Help
  Chromosome 3 - Clone Overlaps - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Overlap Page Whole Chromosome Single Contigs

Line color code:

  • White: overlap with immediately succeeding clone
  • Green: overlap with clone in same contig
  • Pink: overlap with clone in same chromosome, different contig
  • Red: overlap with clone on different chromosome
  • Yellow: overlap with clone not used in assembly
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005646
 
LinksContig1Acc1Start1PhsChr2Contig2Acc2Start2PhsStrong OverlapMedium OverlapWeak OverlapTotal Overlap
S/G/Y/R/B/O NT_005646AC109586270233171chr3NT_005646AC093412270742381669493054070003
S/G/Y/R/B/O NT_005646AC109586270233171chr3NT_005646AC093142272587711110420011042
S/G/Y/R/B/O NT_005646AC093412270742381chr3NT_005646AC0931422725877110000
S/G/Y/R/B/O NT_005646AC093412270742381chr3NT_005646AC098970273929071110960011096
S/G/Y/R/B/O NT_005646AC093142272587711chr3NT_005646AC0989702739290710000
S/G/Y/R/B/O NT_005646AC093142272587711chr3NT_005646AC098616279976693538510053851
S/G/Y/R/B/O NT_005646AC093142272587711chr3NT_005646AC109586270233171110420011042
S/G/Y/R/B/O NT_005646AC098970273929071chr3NT_005646AC0184282754149610000
S/G/Y/R/B/O NT_005646AC098970273929071chr3NT_005684AC01694583953135120692092521617
S/G/Y/R/B/O NT_005646AC098970273929071chr3NT_005646AC093412270742381110960011096
S/G/Y/R/B/O NT_005646AC098970273929071chr3NT_005646AC097361275442791192870019287
S/G/Y/R/B/O NT_005646AC098970273929071chr3NT_005607AC099536614296261145492437484621832
S/G/Y/R/B/O NT_005646AC018428275414961chr3NT_005646AC02554327542607199856455256846161254
S/G/Y/R/B/O NT_005646AC018428275414961chr3NT_005646AC067874277077331671660371870884
S/G/Y/R/B/O NT_005646AC018428275414961chr3NT_005646AC097361275442791866645742092406
S/G/Y/R/B/O NT_005646AC025543275426071chr3NT_005646AC097361275442791869787538094516
S/G/Y/R/B/O NT_005646AC025543275426071chr3NT_005646AC0678742770773316339801673080128
S/G/Y/R/B/O NT_005646AC097361275442791chr3NT_005646AC067874277077331198140228922103
S/G/Y/R/B/O NT_005646AC097361275442791chr3NT_005646AC018428275414961866645742092406
S/G/Y/R/B/O NT_005646AC097361275442791chr3NT_005646AC098970273929071192870019287
S/G/Y/R/B/O NT_005646AC067874277077331chr3NT_005646AC0122622774607534812112386060507
S/G/Y/R/B/O NT_005646AC067874277077331chr3NT_005646AC018428275414961671660371870884
S/G/Y/R/B/O NT_005646AC067874277077331chr3NT_005646AC0255432754260716339801673080128
S/G/Y/R/B/O NT_005646AC012262277460753chr3NT_005646AC0986502789846510270502705
S/G/Y/R/B/O NT_005646AC098650278984651chr3NT_005646AC0986162799766930000
S/G/Y/R/B/O NT_005646AC098650278984651chr3NT_005646AC092501294589583913060091306
S/G/Y/R/B/O NT_005646AC098616279976693chr3NT_005646AC09250328053942310325200103252
S/G/Y/R/B/O NT_005646AC098616279976693chr3NT_005646AC093142272587711538510053851
S/G/Y/R/B/O NT_005646AC098616279976693chr3NT_005646AC09861528932118111077060011677
S/G/Y/R/B/O NT_005646AC092503280539423chr3NT_005646AC025081282495101836314579126889478
S/G/Y/R/B/O NT_005646AC092503280539423chr3NT_005646AC09861528932118111068060011668
S/G/Y/R/B/O NT_005646AC025081282495101chr3NT_005646AC0924152825874636607186841746892223
S/G/Y/R/B/O NT_005646AC092415282587463chr3NT_005646AC0221872843878212669823951856859217
S/G/Y/R/B/O NT_005646AC022187284387821chr3NT_005646AC09897328447255352110105291957182210
S/G/Y/R/B/O NT_005646AC098973284472553chr3NT_005646AC098614286392283241920024192
S/G/Y/R/B/O NT_005646AC098614286392283chr3NT_005646AC084418288396071114300458824845143733
S/G/Y/R/B/O NT_005646AC098614286392283chr3NT_005646AC02561228843599186343509718316109756
S/G/Y/R/B/O NT_005646AC084418288396071chr3NT_005646AC0256122884359917410112461712092467
S/G/Y/R/B/O NT_005646AC084418288396071chr3NT_005646AC099535288606291222323523605731812
S/G/Y/R/B/O NT_005646AC025612288435991chr3NT_005646AC099535288606291282610028261
S/G/Y/R/B/O NT_005646AC025612288435991chr3NT_005646AC09861428639228386343509718316109756
S/G/Y/R/B/O NT_005646AC099535288606291chr3NT_005646AC0986152893211810000
S/G/Y/R/B/O NT_005646AC099535288606291chr3NT_005646AC0249363060379116142119631907382457
S/G/Y/R/B/O NT_005646AC099535288606291chr3NT_005646AC084418288396071222323523605731812
S/G/Y/R/B/O NT_005646AC098615289321181chr3NT_005646AC0997542909289336684006684
S/G/Y/R/B/O NT_005646AC098615289321181chr3NT_005646AC09250328053942311068060011668
S/G/Y/R/B/O NT_005646AC098615289321181chr3NT_005646AC09861627997669311077060011677
S/G/Y/R/B/O NT_005646AC099754290928933chr3NT_005646AC11487729236067110828922010110490
S/G/Y/R/B/O NT_005646AC114877292360671chr3NT_005646AC103922292902053524872718055205
S/G/Y/R/B/O NT_005646AC114877292360671chr3NT_005646AC027438294345021267742718029492
S/G/Y/R/B/O NT_005646AC103922292902053chr3NT_005646AC02743829434502113845101207139658
S/G/Y/R/B/O NT_005646AC027438294345021chr3NT_005646AC0925012945895830000
S/G/Y/R/B/O NT_005646AC027438294345021chr3NT_005646AC0935583014898432556327031122539491
S/G/Y/R/B/O NT_005646AC027438294345021chr3NT_005646AC114877292360671267742718029492
S/G/Y/R/B/O NT_005646AC027438294345021  AC0169582923606711870327011107832482
S/G/Y/R/B/O NT_005646AC027438294345021  AC02634029236067110168909640917486
S/G/Y/R/B/O NT_005646AC092501294589583chr3NT_005646AC021068296182893699310069931
S/G/Y/R/B/O NT_005646AC092501294589583chr3NT_005646AC098650278984651913060091306
S/G/Y/R/B/O NT_005646AC021068296182893chr3NT_005646AC092795297074973218480021848
S/G/Y/R/B/O NT_005646AC092795297074973chr3NT_005646AC092796298281613319700031970
S/G/Y/R/B/O NT_005646AC092796298281613chr3NT_005646AC099048299473923431240043124
S/G/Y/R/B/O NT_005646AC099048299473923chr3NT_005646AC0840003005548219778693241811108921
S/G/Y/R/B/O NT_005646AC099048299473923chr3NT_005646AC097633300704231574070057407
S/G/Y/R/B/O NT_005646AC084000300554821chr3NT_005646AC0976333007042314943611978061414
S/G/Y/R/B/O NT_005646AC084000300554821chr3NT_005646AC027512301236851185914619109324303
S/G/Y/R/B/O NT_005646AC097633300704231chr3NT_005646AC0275123012368513931096171666565592
S/G/Y/R/B/O NT_005646AC097633300704231chr3NT_005646AC011724307436761135911145602720763
S/G/Y/R/B/O NT_005646AC097633300704231chr3NT_005646AC099048299473923574070057407
S/G/Y/R/B/O NT_005646AC027512301236851chr3NT_005646AC0935583014898430000
S/G/Y/R/B/O NT_005646AC027512301236851chr3NT_005646AC0117243074367614108611823308255991
S/G/Y/R/B/O NT_005646AC027512301236851chr3NT_005646AC084000300554821185914619109324303
S/G/Y/R/B/O NT_005646AC093558301489843chr3NT_005646AC098931302872153229960022996
S/G/Y/R/B/O NT_005646AC093558301489843chr3NT_005646AC0274382943450212556327031122539491
S/G/Y/R/B/O NT_005646AC093558301489843  AC01695830070423164828050959115787
S/G/Y/R/B/O NT_005646AC093558301489843  AC0263403007042315072886951333772760
S/G/Y/R/B/O NT_005646AC098931302872153chr3NT_005646AC0935553044330033293003293
S/G/Y/R/B/O NT_005646AC098931302872153  AC016958302872151189930018993
S/G/Y/R/B/O NT_005646AC093555304433003chr3NT_005646AC0249363060379112163429531125135838
S/G/Y/R/B/O NT_005646AC024936306037911chr3NT_005646AC0117243074367610000
S/G/Y/R/B/O NT_005646AC024936306037911chr3NT_005646AC0995352886062916142119631907382457
S/G/Y/R/B/O NT_005646AC011724307436761chr3NT_005646AC0256143088951730193601936
S/G/Y/R/B/O NT_005646AC011724307436761chr3NT_005646AC0275123012368514108611823308255991
S/G/Y/R/B/O NT_005646AC011724307436761chr3NT_005646AC097633300704231135911145602720763
S/G/Y/R/B/O NT_005646AC025614308895173chr3NT_005646AC116035310596641617360061736
S/G/Y/R/B/O NT_005646AC116035310596641chr3NT_005646AC011040311326591138990013899
S/G/Y/R/B/O NT_005646AC116035310596641chr3NT_005646AC096921311585323141730014173
S/G/Y/R/B/O NT_005646AC011040311326591chr3NT_005646AC09692131158532315794620770160023
S/G/Y/R/B/O NT_005646AC011040311326591chr3NT_005646AC0216503137274012873154101422648367
S/G/Y/R/B/O NT_005646AC096921311585323chr3NT_005646AC026959313542671354001701037101
S/G/Y/R/B/O NT_005646AC096921311585323chr3NT_005646AC0216503137274016300738891941386309
S/G/Y/R/B/O NT_005646AC096921311585323chr3NT_005646AC116035310596641141730014173
S/G/Y/R/B/O NT_005646AC026959313542671chr3NT_005646AC021650313727401608963217368867801
S/G/Y/R/B/O NT_005646AC026959313542671chr3NT_005646AC095029314520471435181294144046252
S/G/Y/R/B/O NT_005646AC021650313727401chr3NT_005646AC0950293145204710000
S/G/Y/R/B/O NT_005646AC021650313727401chr3NT_005646AC0110403113265912873154101422648367
S/G/Y/R/B/O NT_005646AC021650313727401chr3NT_005646AC0969213115853236300738891941386309
S/G/Y/R/B/O NT_005646AC095029314520471chr3NT_005646AC107624315228011601381451061589
S/G/Y/R/B/O NT_005646AC095029314520471chr3NT_005646AC026959313542671435181294144046252
S/G/Y/R/B/O NT_005646AC107624315228011chr3NT_005646AC099779316930833997520099752
S/G/Y/R/B/O NT_005646AC107624315228011chr3NT_005646AC023597317914721547920054792
S/G/Y/R/B/O NT_005646AC107624315228011chr3NT_005646AC098647318124091225750022575
S/G/Y/R/B/O NT_005646AC099779316930833chr3NT_005646AC023597317914721125595019255144850
S/G/Y/R/B/O NT_005646AC099779316930833chr3NT_005646AC098647318124091588201905244363168
S/G/Y/R/B/O NT_005646AC023597317914721chr3NT_005646AC098647318124091884571904244192802
S/G/Y/R/B/O NT_005646AC023597317914721chr3NT_005646AC107624315228011547920054792
S/G/Y/R/B/O NT_005646AC023597317914721chr3NT_005646AC115283318251891174732250019723
S/G/Y/R/B/O NT_005646AC098647318124091chr3NT_005646AC115283318251891302644407034671
S/G/Y/R/B/O NT_005646AC098647318124091chr3NT_005646AC099779316930833588201905244363168
S/G/Y/R/B/O NT_005646AC098647318124091chr3NT_005646AC107624315228011225750022575
S/G/Y/R/B/O NT_005646AC115283318251891chr3NT_005646AC0940193186108810000
S/G/Y/R/B/O NT_005646AC115283318251891chr3NT_005646AC023597317914721174732250019723
S/G/Y/R/B/O NT_005646AC115283318251891chr3NT_005646AC099540324764271619260061926
S/G/Y/R/B/O NT_005646AC094019318610881chr3NT_005646AC023523319193861108117214819231129496
S/G/Y/R/B/O NT_005646AC094019318610881chr3NT_005646AC097639328099461524780052478
S/G/Y/R/B/O NT_005646AC094019318610881chr3NT_005646AC108485319687041156440015644
S/G/Y/R/B/O NT_005646AC023523319193861chr3NT_005646AC108485319687041162300016230
S/G/Y/R/B/O NT_005646AC108485319687041chr3NT_005646AC107620320516981654130065413
S/G/Y/R/B/O NT_005646AC108485319687041chr3NT_005646AC094019318610881156440015644
S/G/Y/R/B/O NT_005646AC107620320516981chr3NT_005646AC0920243216029015303503782690861
S/G/Y/R/B/O NT_005646AC092024321602901chr3NT_005646AC104643323169003222870022287
S/G/Y/R/B/O NT_005646AC104643323169003chr3NT_005646AC099540324764271111640011164
S/G/Y/R/B/O NT_005646AC099540324764271chr3NT_005646AC0787813269427810000
S/G/Y/R/B/O NT_005646AC099540324764271chr3NT_005646AC115283318251891619260061926
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC0976393280994610000
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC0125203330524812696904343570404
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC026763333084901288010028801
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC046140333028921425483073989855519
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC0984753305597336378401057374357
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC1035583288143432333101054533876
S/G/Y/R/B/O NT_005646AC078781326942781chr3NT_005646AC1043063312469034849002515173641
S/G/Y/R/B/O NT_005646AC078781326942781  AC011314318251891318020407435876
S/G/Y/R/B/O NT_005646AC097639328099461chr3NT_005646AC103558328814343843650621390578
S/G/Y/R/B/O NT_005646AC097639328099461chr3NT_005646AC094019318610881524780052478
S/G/Y/R/B/O NT_005646AC103558328814343chr3NT_005646AC098475330559733842280084228
S/G/Y/R/B/O NT_005646AC103558328814343chr3NT_005646AC012520333052481618610061861
S/G/Y/R/B/O NT_005646AC103558328814343chr3NT_005646AC0787813269427812333101054533876
S/G/Y/R/B/O NT_005646AC098475330559733chr3NT_005646AC104306331246903189910018991
S/G/Y/R/B/O NT_005646AC098475330559733chr3NT_005646AC012520333052481999340099934
S/G/Y/R/B/O NT_005646AC098475330559733chr3NT_005646AC026763333084901304120030412
S/G/Y/R/B/O NT_005646AC098475330559733chr3NT_005646AC0461403330289211637326382597544986
S/G/Y/R/B/O NT_005646AC098475330559733chr3NT_005646AC0787813269427816378401057374357
S/G/Y/R/B/O NT_005646AC098475330559733  AC011314330559731151150015115
S/G/Y/R/B/O NT_005646AC104306331246903chr3NT_005646AC0461403330289215268771671943079284
S/G/Y/R/B/O NT_005646AC104306331246903chr3NT_005646AC0267633330849019963938512771106261
S/G/Y/R/B/O NT_005646AC104306331246903chr3NT_005646AC0787813269427814849002515173641
S/G/Y/R/B/O NT_005646AC104306331246903  AC01131433124690174285274929811106845
S/G/Y/R/B/O NT_005646AC046140333028921chr3NT_005646AC0125203330524813950757241540760638
S/G/Y/R/B/O NT_005646AC046140333028921chr3NT_005646AC0267633330849014545141901630365944
S/G/Y/R/B/O NT_005646AC046140333028921chr3NT_005646AC078781326942781425483073989855519
S/G/Y/R/B/O NT_005646AC046140333028921chr3NT_005646AC0984753305597331637326382597544986
S/G/Y/R/B/O NT_005646AC046140333028921  AC0113143305597312754847581301145317
S/G/Y/R/B/O NT_005646AC012520333052481chr3NT_005646AC026763333084901001525115251
S/G/Y/R/B/O NT_005646AC012520333052481chr3NT_005646AC0787813269427812696904343570404
S/G/Y/R/B/O NT_005646AC012520333052481chr3NT_005646AC098475330559733999340099934
S/G/Y/R/B/O NT_005646AC012520333052481chr3NT_005646AC103558328814343618610061861
S/G/Y/R/B/O NT_005646AC012520333052481  AC011314331246901151200015120
S/G/Y/R/B/O NT_005646AC026763333084901         
S/G/Y/R/B/O NT_005646AC026763333084901chr3NT_005646AC0461403330289214545141901630365944
S/G/Y/R/B/O NT_005646AC026763333084901chr3NT_005646AC078781326942781288010028801
S/G/Y/R/B/O NT_005646AC026763333084901chr3NT_005646AC098475330559733304120030412
S/G/Y/R/B/O NT_005646AC026763333084901chr3NT_005646AC1043063312469039963938512771106261
S/G/Y/R/B/O NT_005646AC026763333084901  AC011314527198451335060920042706