Home    Genome Browser    BLAT Search    Help
  Chromosome 3 - Clone Overlaps - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Overlap Page Whole Chromosome Single Contigs

Line color code:

  • White: overlap with immediately succeeding clone
  • Green: overlap with clone in same contig
  • Pink: overlap with clone in same chromosome, different contig
  • Red: overlap with clone on different chromosome
  • Yellow: overlap with clone not used in assembly
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_025667
 
LinksContig1Acc1Start1PhsChr2Contig2Acc2Start2PhsStrong OverlapMedium OverlapWeak OverlapTotal Overlap
S/G/Y/R/B/O NT_025667AC0732881748578301chr3NT_025667AC06885317486154110000
S/G/Y/R/B/O NT_025667AC0732881748578301chr3NT_025667AC0080411802623773117820183913621
S/G/Y/R/B/O NT_025667AC0732881748578301chr3NT_025667AC0263721751786701344582635037093
S/G/Y/R/B/O NT_025667AC0732881748578301chr3NT_025667AC04485618003391014562121288231469223
S/G/Y/R/B/O NT_025667AC0688531748615411chr3NT_025667AC061708174865656311226701266113533
S/G/Y/R/B/O NT_025667AC0688531748615411chr3NT_025667AC0263151750622691497710049771
S/G/Y/R/B/O NT_025667AC0688531748615411chr3NT_025667AC0929181750326353237760023776
S/G/Y/R/B/O NT_025667AC0688531748615411  AC023238180033910110797201266109238
S/G/Y/R/B/O NT_025667AC0617081748656563chr3NT_025667AC09291817503263530000
S/G/Y/R/B/O NT_025667AC0617081748656563chr3NT_025667AC0263151750622691314600031460
S/G/Y/R/B/O NT_025667AC0617081748656563  AC023238175032635114718200147182
S/G/Y/R/B/O NT_025667AC0929181750326353chr3NT_025667AC0263151750622691316330031633
S/G/Y/R/B/O NT_025667AC0929181750326353chr3NT_025667AC0688531748615411237760023776
S/G/Y/R/B/O NT_025667AC0929181750326353  AC0232381748615411316090031609
S/G/Y/R/B/O NT_025667AC0263151750622691chr3NT_025667AC0266671751437591378280037828
S/G/Y/R/B/O NT_025667AC0263151750622691chr3NT_025667AC0617081748656563314600031460
S/G/Y/R/B/O NT_025667AC0263151750622691chr3NT_025667AC0688531748615411497710049771
S/G/Y/R/B/O NT_025667AC0263151750622691  AC0232381748615411610750061075
S/G/Y/R/B/O NT_025667AC0263151750622691  AC0985641750326351253790025379
S/G/Y/R/B/O NT_025667AC0266671751437591chr3NT_025667AC02637217517867010000
S/G/Y/R/B/O NT_025667AC0266671751437591chr3NT_025667AC07879317524988833063828332478958260
S/G/Y/R/B/O NT_025667AC0266671751437591  AC0250271750326351247286411722338362
S/G/Y/R/B/O NT_025667AC0266671751437591  AC09856417524988811522991266525920190884
S/G/Y/R/B/O NT_025667AC0263721751786701chr3NT_025667AC07879317524988830000
S/G/Y/R/B/O NT_025667AC0263721751786701chr3NT_025667AC04485618003391016515212306992887386
S/G/Y/R/B/O NT_025667AC0263721751786701chr3NT_025667AC0732881748578301344582635037093
S/G/Y/R/B/O NT_025667AC0787931752498883chr3NT_025667AC09291917540271730000
S/G/Y/R/B/O NT_025667AC0787931752498883chr3NT_025667AC02666717514375913063828332478958260
S/G/Y/R/B/O NT_025667AC0787931752498883  AC025027174857830112475997725288139819
S/G/Y/R/B/O NT_025667AC0787931752498883  AC09856417514375914250002505467554
S/G/Y/R/B/O NT_025667AC0929191754027173chr3NT_025667AC00813417550183830000
S/G/Y/R/B/O NT_025667AC0929191754027173  AC02471417514375915834103149989840
S/G/Y/R/B/O NT_025667AC0929191754027173  AC0263211751437591119850011985
S/G/Y/R/B/O NT_025667AC0081341755018383chr3NT_025667AC07895317567495630000
S/G/Y/R/B/O NT_025667AC0081341755018383  AC019265175143759211975700119757
S/G/Y/R/B/O NT_025667AC0081341755018383  AC0247141751437591553910055391
S/G/Y/R/B/O NT_025667AC0081341755018383  AC026321175143759111866328986524128085
S/G/Y/R/B/O NT_025667AC0081341755018383  AC0929711751437591909840581296796
S/G/Y/R/B/O NT_025667AC0789531756749563chr3NT_025667AC05571417583262210199901999
S/G/Y/R/B/O NT_025667AC0789531756749563  AC0192651751437592598770059877
S/G/Y/R/B/O NT_025667AC0789531756749563  AC0929711758326221598710059871
S/G/Y/R/B/O NT_025667AC0557141758326221chr3NT_025667AC06925917599841130000
S/G/Y/R/B/O NT_025667AC0557141758326221  AC016783967560771812251778108884091
S/G/Y/R/B/O NT_025667AC0557141758326221  AC026312967560771304470030447
S/G/Y/R/B/O NT_025667AC0557141758326221  AC02632296756077148652095818144470
S/G/Y/R/B/O NT_025667AC0557141758326221  AC07335496756077116775200167752
S/G/Y/R/B/O NT_025667AC0557141758326221  AC108712175674956175024034058109082
S/G/Y/R/B/O NT_025667AC0692591759984113chr3NT_025667AC1086681761155761501280050128
S/G/Y/R/B/O NT_025667AC0692591759984113chr3NT_025667AC0206491763405541134512022214156726
S/G/Y/R/B/O NT_025667AC0692591759984113  AC026312176340554110766024840110144
S/G/Y/R/B/O NT_025667AC1086681761155761chr3NT_025667AC09296417632115713811129544225583320
S/G/Y/R/B/O NT_025667AC1086681761155761chr3NT_025667AC025545176346649141520100202109372633
S/G/Y/R/B/O NT_025667AC0929641763211571chr3NT_025667AC02064917634055410000
S/G/Y/R/B/O NT_025667AC0929641763211571chr3NT_025667AC0255451763466491806991658673875171160
S/G/Y/R/B/O NT_025667AC0206491763405541chr3NT_025667AC02554517634664910000
S/G/Y/R/B/O NT_025667AC0206491763405541chr3NT_025667AC0692591759984113134512022214156726
S/G/Y/R/B/O NT_025667AC0206491763405541  AC026312967560771166850956326248
S/G/Y/R/B/O NT_025667AC0255451763466491chr3NT_025667AC06952317636095432886846823340566955
S/G/Y/R/B/O NT_025667AC0255451763466491chr3NT_025667AC0929641763211571806991658673875171160
S/G/Y/R/B/O NT_025667AC0255451763466491chr3NT_025667AC108668176115576141520100202109372633
S/G/Y/R/B/O NT_025667AC0695231763609543chr3NT_025667AC0169381765025091679980067998
S/G/Y/R/B/O NT_025667AC0169381765025091chr3NT_025667AC0070511765091833600202119927201
S/G/Y/R/B/O NT_025667AC0169381765025091chr3NT_025667AC00791917667699331277201338226154
S/G/Y/R/B/O NT_025667AC0070511765091833chr3NT_025667AC007919176676993313589800135898
S/G/Y/R/B/O NT_025667AC0070511765091833chr3NT_025667AC0692371767597711139144778218620878
S/G/Y/R/B/O NT_025667AC0079191766769933chr3NT_025667AC10866717672598910000
S/G/Y/R/B/O NT_025667AC0079191766769933chr3NT_025667AC01693817650250911277201338226154
S/G/Y/R/B/O NT_025667AC0079191766769933chr3NT_025667AC06923717675977111991647651896843649
S/G/Y/R/B/O NT_025667AC0079191766769933  AC07879217675977111079040131418728990
S/G/Y/R/B/O NT_025667AC1086671767259891chr3NT_025667AC0692371767597711296530029653
S/G/Y/R/B/O NT_025667AC1086671767259891chr3NT_025667AC0929481768542703288960028896
S/G/Y/R/B/O NT_025667AC0692371767597711chr3NT_025667AC09294817685427030000
S/G/Y/R/B/O NT_025667AC0692371767597711chr3NT_025667AC0070511765091833139144778218620878
S/G/Y/R/B/O NT_025667AC0692371767597711chr3NT_025667AC00791917667699331991647651896843649
S/G/Y/R/B/O NT_025667AC0929481768542703chr3NT_025667AC06393317699884830000
S/G/Y/R/B/O NT_025667AC0929481768542703chr3NT_025667AC1086671767259891288960028896
S/G/Y/R/B/O NT_025667AC0929481768542703  AC0262841767259891931491343521974128558
S/G/Y/R/B/O NT_025667AC0639331769988483chr3NT_025667AC0687581771652283839090083909
S/G/Y/R/B/O NT_025667AC0639331769988483  AC0262841767259891131521895134416391
S/G/Y/R/B/O NT_025667AC0639331769988483  AC053521176725989110704500107045
S/G/Y/R/B/O NT_025667AC0639331769988483  AC092930177165228168943045866114809
S/G/Y/R/B/O NT_025667AC0687581771652283chr3NT_025667AC06875917720663030000
S/G/Y/R/B/O NT_025667AC0687581771652283  AC0535211771652281865960111487710
S/G/Y/R/B/O NT_025667AC0687581771652283  AC0929301769988481953080095308
S/G/Y/R/B/O NT_025667AC0687581771652283  AC0929491769988481186950018695
S/G/Y/R/B/O NT_025667AC0687591772066303chr3NT_025667AC01845617738798730000
S/G/Y/R/B/O NT_025667AC0687591772066303  AC026287176998848114565905883151542
S/G/Y/R/B/O NT_025667AC0687591772066303  AC092949176998848116032400160324
S/G/Y/R/B/O NT_025667AC0184561773879873chr3NT_025667AC012082177504432311460200114602
S/G/Y/R/B/O NT_025667AC0120821775044323chr3NT_025667AC09293517754809130000
S/G/Y/R/B/O NT_025667AC0120821775044323  AC0695311773879871562920206158353
S/G/Y/R/B/O NT_025667AC0929351775480913chr3NT_025667AC09296717756576610000
S/G/Y/R/B/O NT_025667AC0929351775480913  AC0260991773879871193290019329
S/G/Y/R/B/O NT_025667AC0929351775480913  AC0695311773879871113540011354
S/G/Y/R/B/O NT_025667AC0929671775657661chr3NT_025667AC0929231777436031200540020054
S/G/Y/R/B/O NT_025667AC0929671775657661chr3NT_025667AC0241781778379861175330017533
S/G/Y/R/B/O NT_025667AC0929671775657661  AC02609917783798613026740591789152217
S/G/Y/R/B/O NT_025667AC0929671775657661  AC026870177837986117027517802334174389
S/G/Y/R/B/O NT_025667AC0929671775657661  AC06953117783798619660828764197103681
S/G/Y/R/B/O NT_025667AC0929231777436031chr3NT_025667AC024178177837986112857584285612142615
S/G/Y/R/B/O NT_025667AC0929231777436031chr3NT_033052AC1108711804794871894540089454
S/G/Y/R/B/O NT_025667AC0929231777436031  AC0268701778379861176080233419942
S/G/Y/R/B/O NT_025667AC0241781778379861chr3NT_025667AC07879517784012610000
S/G/Y/R/B/O NT_025667AC0241781778379861chr3NT_025667AC0929671775657661175330017533
S/G/Y/R/B/O NT_025667AC0241781778379861chr3NT_033052AC1108711804794871573718391251768279
S/G/Y/R/B/O NT_025667AC0787951778401261chr3NT_025667AC06924317790283830000
S/G/Y/R/B/O NT_025667AC0787951778401261chr3NT_025667AC00804017972494831969001537735067
S/G/Y/R/B/O NT_025667AC0692431779028383chr3NT_025667AC0168631780894181849461773086719
S/G/Y/R/B/O NT_025667AC0692431779028383chr3NT_025667AC0277051781032311130023278016280
S/G/Y/R/B/O NT_025667AC0692431779028383  AC0929501781032311185570018557
S/G/Y/R/B/O NT_025667AC0168631780894181chr3NT_025667AC0277051781032311503722836217055378
S/G/Y/R/B/O NT_025667AC0168631780894181  AC0929501779028381744692836217079475
S/G/Y/R/B/O NT_025667AC0168631780894181  AL3553641820545201499842922052906
S/G/Y/R/B/O NT_025667AC0277051781032311chr3NT_025667AC0098621781955001324444427036871
S/G/Y/R/B/O NT_025667AC0277051781032311chr3NT_025667AC0617101782621113588324427063259
S/G/Y/R/B/O NT_025667AC0277051781032311chr3NT_025667AC0692431779028383130023278016280
S/G/Y/R/B/O NT_025667AC0277051781032311  AC092950177902838112847420290130503
S/G/Y/R/B/O NT_025667AC0277051781032311  AL3553641820545201404735143353849154
S/G/Y/R/B/O NT_025667AC0098621781955001chr3NT_025667AC061710178262111318508920800187169
S/G/Y/R/B/O NT_025667AC0098621781955001  AC0113211577854141741660074166
S/G/Y/R/B/O NT_025667AC0098621781955001  AC0929501782621111477862093049879
S/G/Y/R/B/O NT_025667AC0098621781955001  AL3553641782621111756092221077830
S/G/Y/R/B/O NT_025667AC0617101782621113chr3NT_025667AC01835617838297430000
S/G/Y/R/B/O NT_025667AC0617101782621113chr3NT_025667AC0277051781032311588324427063259
S/G/Y/R/B/O NT_025667AC0617101782621113  AC0113211781955001815710081571
S/G/Y/R/B/O NT_025667AC0617101782621113  AC0929501781032311697822093071875
S/G/Y/R/B/O NT_025667AC0617101782621113  AL3553641781032311679722221070193
S/G/Y/R/B/O NT_025667AC0183561783829743chr3NT_025667AC11291117850382030000
S/G/Y/R/B/O NT_025667AC0183561783829743  AC01132117819550013760701615553762
S/G/Y/R/B/O NT_025667AC0183561783829743  AC040973178195500110277918021310105891
S/G/Y/R/B/O NT_025667AC1129111785038203chr3NT_025667AC0694141786032831820142289084303
S/G/Y/R/B/O NT_025667AC1129111785038203  AC0409731781955001665342727118170442
S/G/Y/R/B/O NT_025667AC1129111785038203  AC0557591781955001127760012776
S/G/Y/R/B/O NT_025667AC0694141786032831chr3NT_025667AC0929541787222301129120012912
S/G/Y/R/B/O NT_025667AC0694141786032831  AC0260801786032831108780010878
S/G/Y/R/B/O NT_025667AC0694141786032831  AC0409731786032831422110118143392
S/G/Y/R/B/O NT_025667AC0694141786032831  AC0557591786032831684860464573131
S/G/Y/R/B/O NT_025667AC0694141786032831  AC05833317860328316848701965588142
S/G/Y/R/B/O NT_025667AC0929541787222301chr3NT_025667AC046139178888682111152705583117110
S/G/Y/R/B/O NT_025667AC0929541787222301chr3NT_022517AC0639352278010011264241952695443791
S/G/Y/R/B/O NT_025667AC0929541787222301  AC026058178503820139625121152927581015
S/G/Y/R/B/O NT_025667AC0929541787222301  AC02608017850382011313411057121810163722
S/G/Y/R/B/O NT_025667AC0929541787222301  AC0583331788886821804370080437
S/G/Y/R/B/O NT_025667AC0929541787222301  AC09293217774360317140402797999383
S/G/Y/R/B/O NT_025667AC0461391788886821chr3NT_025667AC00748017889932112591201312639038
S/G/Y/R/B/O NT_025667AC0461391788886821  AC026058178925967142687141773641393277
S/G/Y/R/B/O NT_025667AC0461391788886821  AC0260801789259671650500065050
S/G/Y/R/B/O NT_025667AC0461391788886821  AC0557591789259671250200558330603
S/G/Y/R/B/O NT_025667AC0461391788886821  AC0583331789259671250210558330604
S/G/Y/R/B/O NT_025667AC0461391788886821  AC09293217774360316401102853292543
S/G/Y/R/B/O NT_025667AC0074801788993211chr3NT_025667AC0223321789259671407012619043320
S/G/Y/R/B/O NT_025667AC0074801788993211chr3NT_025667AC078985178927899380497769429058117249
S/G/Y/R/B/O NT_025667AC0074801788993211  AC02605817892596711550372441994842695
S/G/Y/R/B/O NT_025667AC0074801788993211  AC09293217774360311605816562830246016
S/G/Y/R/B/O NT_025667AC0223321789259671chr3NT_025667AC078985178927899313413000134130
S/G/Y/R/B/O NT_025667AC0223321789259671  AC0929321777436031277910027791
S/G/Y/R/B/O NT_025667AC0789851789278993chr3NT_025667AC02409917910888130000
S/G/Y/R/B/O NT_025667AC0789851789278993chr3NT_025667AC007480178899321180497769429058117249
S/G/Y/R/B/O NT_025667AC0789851789278993  AC0677201789259671203790020379
S/G/Y/R/B/O NT_025667AC0789851789278993  AC0929321777436031343790034379
S/G/Y/R/B/O NT_025667AC0240991791088813chr3NT_025667AC06922017915394030000
S/G/Y/R/B/O NT_025667AC0240991791088813  AC0677201777436031470020047002
S/G/Y/R/B/O NT_025667AC0692201791539403chr3NT_025667AC0000541792221193641840064184
S/G/Y/R/B/O NT_025667AC0692201791539403chr3NT_025667AL3914141792862303177960017796
S/G/Y/R/B/O NT_025667AC0692201791539403  AC010940179222119115619600156196
S/G/Y/R/B/O NT_025667AC0692201791539403  AC0677201792221191931440093144
S/G/Y/R/B/O NT_025667AC0692201791539403  AC0695101792221191486950107560156255
S/G/Y/R/B/O NT_025667AC0692201791539403  AL44542417928623012509623027048123
S/G/Y/R/B/O NT_025667AC0000541792221193chr3NT_025667AL39141417928623030000
S/G/Y/R/B/O NT_025667AC0000541792221193  AC0677201792862301229670022967
S/G/Y/R/B/O NT_025667AC0000541792221193  AC0695101791539401593130059313
S/G/Y/R/B/O NT_025667AC0000541792221193  AL44542417915394012509710847035944
S/G/Y/R/B/O NT_025667AL3914141792862303chr3NT_025667AC07403317930738230000
S/G/Y/R/B/O NT_025667AL3914141792862303chr3NT_025667AC0692201791539403177960017796
S/G/Y/R/B/O NT_025667AL3914141792862303  AC0695101791539401177960017796
S/G/Y/R/B/O NT_025667AC0740331793073823chr3NT_025667AC1143051793743051004686346863
S/G/Y/R/B/O NT_025667AC1143051793743051chr3NT_025667AC0078491794551861248480024848
S/G/Y/R/B/O NT_025667AC0078491794551861chr3NT_025667AC0788021795491531840670333587402
S/G/Y/R/B/O NT_025667AC0788021795491531chr3NT_025667AC00804017972494830000
S/G/Y/R/B/O NT_025667AC0080401797249483chr3NT_025667AC0238911799012011286550308831743
S/G/Y/R/B/O NT_025667AC0080401797249483chr3NT_025667AC07879517784012611969001537735067
S/G/Y/R/B/O NT_025667AC0238911799012011chr3NT_025667AC04485618003391012081314046638741246
S/G/Y/R/B/O NT_025667AC0448561800339101chr3NT_025667AC00804118026237730000
S/G/Y/R/B/O NT_025667AC0448561800339101chr3NT_025667AC02637217517867016515212306992887386
S/G/Y/R/B/O NT_025667AC0448561800339101chr3NT_025667AC07328817485783014562121288231469223
S/G/Y/R/B/O NT_025667AC0080411802623773         
S/G/Y/R/B/O NT_025667AC0080411802623773chr3NT_025667AC0732881748578301117820183913621