Chromosome 9 - Clone Overlaps

Chromosome 9 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033218	NT_008413	NT_027081	NT_023974	NT_030040	NT_033214	NT_030759	NT_030753
NT_033213	NT_033210	NT_008389	NT_033219	NT_033217	NT_029359	NT_033209	NT_033206
NT_033208	NT_033212	NT_033205	NT_033203	NT_031832	NT_033211	NT_033207	NT_008580
NT_023935	NT_028278	NT_023975	NT_023946	NT_023932	NT_024010	NT_033202	NT_008476
NT_033216	NT_008470	NT_008438	NT_017568	NT_029366	NT_008338	NT_031835	NT_017539
NT_008554	NT_023969	NT_030058	NT_019501	NT_033215	NT_024000	NT_023929	NT_023989

NT_008338

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_008338	AC011156	121429815	1	chr9	NT_008338	AL354898	121432606	2	56218	0	2536	58754
S/G/Y/R/B/O	NT_008338	AC011156	121429815	1	chr9	NT_008338	AL353695	121605629	3	64957	10270	1500	76727
S/G/Y/R/B/O	NT_008338	AC011156	121429815	1			AC015497	121175070	1	11045	5300	0	16345
S/G/Y/R/B/O	NT_008338	AC011156	121429815	1			AL603629	121690190	2	56108	0	2535	58643
S/G/Y/R/B/O	NT_008338	AC011156	121429815	1			AY034076	121690190	3	45860	0	0	45860
S/G/Y/R/B/O	NT_008338	AL354898	121432606	2	chr9	NT_008338	AL353695	121605629	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL354898	121432606	2			AL603629	121429815	2	172902	0	0	172902
S/G/Y/R/B/O	NT_008338	AL354898	121432606	2			AY034076	121429815	3	50480	0	0	50480
S/G/Y/R/B/O	NT_008338	AL353695	121605629	3	chr9	NT_008338	AL359092	121690190	1	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL353695	121605629	3	chr9	NT_008338	AC011156	121429815	1	64957	10270	1500	76727
S/G/Y/R/B/O	NT_008338	AL353695	121605629	3			AC015497	121429815	1	17080	0	0	17080
S/G/Y/R/B/O	NT_008338	AL359092	121690190	1	chr9	NT_008338	AL161733	121863553	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008338	AL359092	121690190	1			AC015497	121429815	1	102370	5752	6203	114325
S/G/Y/R/B/O	NT_008338	AL359092	121690190	1			AL357893	121863553	1	123067	5135	25791	153993
S/G/Y/R/B/O	NT_008338	AL359092	121690190	1			U07561	121863553	3	35933	0	0	35933
S/G/Y/R/B/O	NT_008338	AL161733	121863553	3	chr9	NT_008338	AL583807	122038019	2	90940	0	0	90940
S/G/Y/R/B/O	NT_008338	AL583807	122038019	2	chr9	NT_008338	AL355872	122126626	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008338	AL583807	122038019	2			U07563	122126626	3	26537	0	0	26537
S/G/Y/R/B/O	NT_008338	AL355872	122126626	3	chr9	NT_008338	AL157938	122176796	3	0	1993	0	1993
S/G/Y/R/B/O	NT_008338	AL157938	122176796	3	chr9	NT_008338	AL354855	122371818	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL157938	122176796	3			AL158039	122038019	1	27251	2509	0	29760
S/G/Y/R/B/O	NT_008338	AL354855	122371818	3	chr9	NT_008338	AL358781	122482667	2	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL354855	122371818	3			AC092146	63842218	1	60119	0	29672	89791
S/G/Y/R/B/O	NT_008338	AL354855	122371818	3			AL158039	63842218	1	81066	4588	10226	95880
S/G/Y/R/B/O	NT_008338	AL358781	122482667	2	chr9	NT_008338	AL160276	122628159	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008338	AL160276	122628159	3	chr9	NT_008338	AL160271	122770315	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL160271	122770315	3	chr9	NT_008338	AL603649	122948524	3	0	1987	0	1987
S/G/Y/R/B/O	NT_008338	AL160271	122770315	3	chr9	NT_008338	AL713892	123024145	1	28362	2046	0	30408
S/G/Y/R/B/O	NT_008338	AL603649	122948524	3	chr9	NT_008338	AL713892	123024145	1	63377	4419	0	67796
S/G/Y/R/B/O	NT_008338	AL713892	123024145	1	chr9	NT_008338	AL691506	123053210	1	0	0	329	329
S/G/Y/R/B/O	NT_008338	AL713892	123024145	1	chr9	NT_008338	AL160271	122770315	3	28362	2046	0	30408
S/G/Y/R/B/O	NT_008338	AL691506	123053210	1	chr9	NT_008338	AL513102	123070992	3	142868	0	0	142868
S/G/Y/R/B/O	NT_008338	AL691506	123053210	1	chr9	NT_008338	AL353631	123213925	3	25073	0	0	25073
S/G/Y/R/B/O	NT_008338	AL513102	123070992	3	chr9	NT_008338	AL353631	123213925	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL353631	123213925	3	chr9	NT_008338	AL159997	123309037	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008338	AL353631	123213925	3	chr9	NT_008338	AL691506	123053210	1	25073	0	0	25073
S/G/Y/R/B/O	NT_008338	AL159997	123309037	3	chr9	NT_008338	AL353701	123414112	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL353701	123414112	3	chr9	NT_008338	AL354735	123521979	3	0	0	100	100
S/G/Y/R/B/O	NT_008338	AL354735	123521979	3	chr9	NT_008338	AL160165	123711700	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL160165	123711700	3	chr9	NT_008338	AL445645	123851376	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL160165	123711700	3			AC002095	123414112	2	32760	0	0	32760
S/G/Y/R/B/O	NT_008338	AL160165	123711700	3			AC015488	123414112	1	90139	5000	0	95139
S/G/Y/R/B/O	NT_008338	AL160165	123711700	3			AL161726	123414112	1	55450	0	16820	72270
S/G/Y/R/B/O	NT_008338	AL445645	123851376	3	chr9	NT_008338	AL593851	124050389	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL445645	123851376	3			AC000392	123414112	3	44088	0	0	44088
S/G/Y/R/B/O	NT_008338	AL445645	123851376	3			AC002096	123414112	3	39775	0	0	39775
S/G/Y/R/B/O	NT_008338	AL445645	123851376	3			AC002318	123414112	2	41423	0	2375	43798
S/G/Y/R/B/O	NT_008338	AL445645	123851376	3			AC004589	123414112	3	35435	0	0	35435
S/G/Y/R/B/O	NT_008338	AL445645	123851376	3			AL161726	123414112	1	96643	0	8423	105066
S/G/Y/R/B/O	NT_008338	AL593851	124050389	3	chr9	NT_008338	AL162417	124118315	3	0	0	0	0
S/G/Y/R/B/O	NT_008338	AL593851	124050389	3			AC000393	123414112	3	43666	0	0	43666
S/G/Y/R/B/O	NT_008338	AL593851	124050389	3			AC002120	123414112	3	23435	0	0	23435
S/G/Y/R/B/O	NT_008338	AL162417	124118315	3