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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_029359 | AC068705 | 56891482 | 1 | chr9 | NT_029359 | AC068367 | 56893365 | 2 | 54744 | 1773 | 18791 | 75308 |
| S/G/Y/R/B/O |
NT_029359 | AC068705 | 56891482 | 1 | chr9 | NT_033206 | AL354718 | 57714185 | 2 | 67234 | 6356 | 1293 | 74883 |
| S/G/Y/R/B/O |
NT_029359 | AC068705 | 56891482 | 1 | chr9 | NT_033211 | AL590399 | 59442910 | 2 | 54773 | 1773 | 14550 | 71096 |
| S/G/Y/R/B/O |
NT_029359 | AC068705 | 56891482 | 1 | chr9 | NT_033213 | AL591479 | 53775985 | 3 | 11812 | 4633 | 24899 | 41344 |
| S/G/Y/R/B/O |
NT_029359 | AC068705 | 56891482 | 1 |   |   | AC036165 | 158441132 | 1 | 13223 | 0 | 5661 | 18884 |
| S/G/Y/R/B/O |
NT_029359 | AC068367 | 56893365 | 2 | chr9 | NT_029359 | AL365201 | 56956710 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029359 | AC068367 | 56893365 | 2 | chr9 | NT_033206 | AL354718 | 57714185 | 2 | 26191 | 0 | 0 | 26191 |
| S/G/Y/R/B/O |
NT_029359 | AC068367 | 56893365 | 2 | chr9 | NT_033211 | AL590399 | 59442910 | 2 | 162723 | 0 | 0 | 162723 |
| S/G/Y/R/B/O |
NT_029359 | AC068367 | 56893365 | 2 |   |   | AC026515 | 158446675 | 1 | 107007 | 0 | 0 | 107007 |
| S/G/Y/R/B/O |
NT_029359 | AL365201 | 56956710 | 3 | chr9 | NT_029359 | AL162252 | 57070736 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029359 | AL365201 | 56956710 | 3 | chr4 | NT_028146 | AC098860 | 196440878 | 3 | 108304 | 0 | 0 | 108304 |
| S/G/Y/R/B/O |
NT_029359 | AL365201 | 56956710 | 3 |   |   | AC097651 | 56891482 | 1 | 101056 | 0 | 0 | 101056 |
| S/G/Y/R/B/O |
NT_029359 | AL162252 | 57070736 | 1 | chr9 | NT_029359 | AL591438 | 57342801 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029359 | AL591438 | 57342801 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_029359 | AL591438 | 57342801 | 3 | chr9 | NT_033208 | AL592220 | 57955831 | 3 | 105116 | 0 | 0 | 105116 |
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