|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008389 | AC022544 | 54214457 | 1 | chr9 | NT_008389 | AC022626 | 54216400 | 1 | 81499 | 23953 | 26161 | 131613 |
| S/G/Y/R/B/O |
NT_008389 | AC022544 | 54214457 | 1 | chr9 | NT_008389 | AL590812 | 54930696 | 3 | 19725 | 0 | 0 | 19725 |
| S/G/Y/R/B/O |
NT_008389 | AC022626 | 54216400 | 1 | chr9 | NT_008389 | AL162415 | 54244227 | 3 | 0 | 0 | 11918 | 11918 |
| S/G/Y/R/B/O |
NT_008389 | AC022626 | 54216400 | 1 | chr9 | NT_008389 | AL590812 | 54930696 | 3 | 12194 | 6141 | 3716 | 22051 |
| S/G/Y/R/B/O |
NT_008389 | AL162415 | 54244227 | 3 | chr9 | NT_008389 | AL591867 | 54290051 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL591867 | 54290051 | 3 | chr9 | NT_008389 | AL445584 | 54372565 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL445584 | 54372565 | 1 | chr9 | NT_008389 | AC020667 | 54554878 | 1 | 140127 | 2905 | 1030 | 144062 |
| S/G/Y/R/B/O |
NT_008389 | AC020667 | 54554878 | 1 | chr9 | NT_008389 | AC084146 | 54564513 | 1 | 0 | 0 | 53960 | 53960 |
| S/G/Y/R/B/O |
NT_008389 | AC020667 | 54554878 | 1 | chr9 | NT_008389 | AL596385 | 54568346 | 3 | 71273 | 0 | 50636 | 121909 |
| S/G/Y/R/B/O |
NT_008389 | AC084146 | 54564513 | 1 | chr9 | NT_008389 | AL596385 | 54568346 | 3 | 9159 | 0 | 38732 | 47891 |
| S/G/Y/R/B/O |
NT_008389 | AC084146 | 54564513 | 1 | chr9 | NT_008389 | AL590491 | 54995934 | 2 | 33311 | 4525 | 98130 | 135966 |
| S/G/Y/R/B/O |
NT_008389 | AL596385 | 54568346 | 3 | chr9 | NT_008389 | AL353770 | 54616028 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL596385 | 54568346 | 3 | chr9 | NT_008389 | AC020667 | 54554878 | 1 | 71273 | 0 | 50636 | 121909 |
| S/G/Y/R/B/O |
NT_008389 | AL596385 | 54568346 | 3 |   |   | AC011961 | 54568346 | 1 | 64328 | 0 | 14090 | 78418 |
| S/G/Y/R/B/O |
NT_008389 | AL353770 | 54616028 | 3 | chr9 | NT_008389 | AL162233 | 54746926 | 1 | 0 | 2001 | 0 | 2001 |
| S/G/Y/R/B/O |
NT_008389 | AL353770 | 54616028 | 3 |   |   | AC011961 | 54564513 | 1 | 90040 | 0 | 11386 | 101426 |
| S/G/Y/R/B/O |
NT_008389 | AL353770 | 54616028 | 3 |   |   | AC020747 | 54554878 | 1 | 35292 | 0 | 0 | 35292 |
| S/G/Y/R/B/O |
NT_008389 | AL162233 | 54746926 | 1 | chr9 | NT_008389 | AL590812 | 54930696 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL162233 | 54746926 | 1 |   |   | AC011961 | 54746926 | 1 | 63108 | 2080 | 0 | 65188 |
| S/G/Y/R/B/O |
NT_008389 | AL162233 | 54746926 | 1 |   |   | AC020747 | 54554878 | 1 | 99576 | 0 | 40947 | 140523 |
| S/G/Y/R/B/O |
NT_008389 | AL162233 | 54746926 | 1 |   |   | AC025861 | 54554878 | 1 | 20039 | 5075 | 2990 | 28104 |
| S/G/Y/R/B/O |
NT_008389 | AL590812 | 54930696 | 3 | chr9 | NT_008389 | AL590491 | 54995934 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL590812 | 54930696 | 3 | chr9 | NT_008389 | AC022544 | 54214457 | 1 | 19725 | 0 | 0 | 19725 |
| S/G/Y/R/B/O |
NT_008389 | AL590812 | 54930696 | 3 | chr9 | NT_008389 | AC022626 | 54216400 | 1 | 12194 | 6141 | 3716 | 22051 |
| S/G/Y/R/B/O |
NT_008389 | AL590491 | 54995934 | 2 | chr9 | NT_008389 | AL162501 | 55217225 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL590491 | 54995934 | 2 | chr9 | NT_008389 | AC084146 | 54564513 | 1 | 33311 | 4525 | 98130 | 135966 |
| S/G/Y/R/B/O |
NT_008389 | AL590491 | 54995934 | 2 |   |   | AC011961 | 54216400 | 1 | 42904 | 0 | 53792 | 96696 |
| S/G/Y/R/B/O |
NT_008389 | AL162501 | 55217225 | 3 | chr9 | NT_008389 | AL353729 | 55335789 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL353729 | 55335789 | 3 | chr9 | NT_008389 | AL592525 | 55529457 | 2 | 0 | 0 | 133587 | 133587 |
| S/G/Y/R/B/O |
NT_008389 | AL592525 | 55529457 | 2 | chr9 | NT_008389 | AL353791 | 55536114 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_008389 | AL592525 | 55529457 | 2 |   |   | AC025861 | 55529457 | 1 | 92439 | 11245 | 4899 | 108583 |
| S/G/Y/R/B/O |
NT_008389 | AL353791 | 55536114 | 3 | chr9 | NT_008389 | AL591855 | 55543696 | 3 | 0 | 1984 | 0 | 1984 |
| S/G/Y/R/B/O |
NT_008389 | AL591855 | 55543696 | 3 | chr9 | NT_008389 | AL355151 | 55694916 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL591855 | 55543696 | 3 | chr9 | NT_008389 | AL627306 | 55721771 | 2 | 63577 | 0 | 0 | 63577 |
| S/G/Y/R/B/O |
NT_008389 | AL591855 | 55543696 | 3 |   |   | AL354874 | 55536114 | 3 | 88399 | 0 | 0 | 88399 |
| S/G/Y/R/B/O |
NT_008389 | AL355151 | 55694916 | 3 | chr9 | NT_008389 | AL627306 | 55721771 | 2 | 28836 | 0 | 0 | 28836 |
| S/G/Y/R/B/O |
NT_008389 | AL627306 | 55721771 | 2 | chr9 | NT_008389 | AL162731 | 55800438 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL627306 | 55721771 | 2 | chr9 | NT_033207 | AL391987 | 59680415 | 1 | 78752 | 0 | 0 | 78752 |
| S/G/Y/R/B/O |
NT_008389 | AL627306 | 55721771 | 2 | chr9 | NT_008389 | AL591855 | 55543696 | 3 | 63577 | 0 | 0 | 63577 |
| S/G/Y/R/B/O |
NT_008389 | AL627306 | 55721771 | 2 |   |   | AC011967 | 55721771 | 1 | 29996 | 0 | 0 | 29996 |
| S/G/Y/R/B/O |
NT_008389 | AL627306 | 55721771 | 2 |   |   | AL354874 | 53742069 | 3 | 63828 | 0 | 0 | 63828 |
| S/G/Y/R/B/O |
NT_008389 | AL627306 | 55721771 | 2 |   |   | AL591889 | 55543696 | 2 | 75493 | 0 | 0 | 75493 |
| S/G/Y/R/B/O |
NT_008389 | AL162731 | 55800438 | 3 | chr9 | NT_008389 | AL627230 | 55952623 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008389 | AL162731 | 55800438 | 3 | chr1 | NT_004668 | AC025222 | 158446675 | 1 | 12433 | 0 | 26924 | 39357 |
| S/G/Y/R/B/O |
NT_008389 | AL162731 | 55800438 | 3 | chr9 | NT_033207 | AL391987 | 59680415 | 1 | 152717 | 0 | 0 | 152717 |
| S/G/Y/R/B/O |
NT_008389 | AL162731 | 55800438 | 3 | chr9 | NT_033214 | AL591926 | 53063011 | 2 | 160017 | 0 | 0 | 160017 |
| S/G/Y/R/B/O |
NT_008389 | AL162731 | 55800438 | 3 |   |   | AC011967 | 55543696 | 1 | 58118 | 5166 | 31135 | 94419 |
| S/G/Y/R/B/O |
NT_008389 | AL162731 | 55800438 | 3 |   |   | AL118524 | 158446675 | 3 | 95267 | 0 | 0 | 95267 |
| S/G/Y/R/B/O |
NT_008389 | AL627230 | 55952623 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008389 | AL627230 | 55952623 | 2 | chr9 | NT_033214 | AL591926 | 53063011 | 2 | 170763 | 0 | 0 | 170763 |
| S/G/Y/R/B/O |
NT_008389 | AL627230 | 55952623 | 2 |   |   | AC011967 | 53063011 | 1 | 85535 | 2557 | 9439 | 97531 |
| S/G/Y/R/B/O |
NT_008389 | AL627230 | 55952623 | 2 |   |   | AC026515 | 158446675 | 1 | 14730 | 0 | 0 | 14730 |
| |
|
|
|