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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_019501 | AL669970 | 125615345 | 1 | chr9 | NT_019501 | AL591890 | 125785006 | 1 | 30506 | 0 | 0 | 30506 |
| S/G/Y/R/B/O |
NT_019501 | AL669970 | 125615345 | 1 |   |   | AL158031 | 107524882 | 1 | 99590 | 7248 | 25665 | 132503 |
| S/G/Y/R/B/O |
NT_019501 | AL591890 | 125785006 | 1 | chr9 | NT_019501 | AC084100 | 125894532 | 1 | 75958 | 4057 | 13889 | 93904 |
| S/G/Y/R/B/O |
NT_019501 | AL591890 | 125785006 | 1 |   |   | AL158031 | 125894532 | 1 | 10201 | 2126 | 0 | 12327 |
| S/G/Y/R/B/O |
NT_019501 | AC084100 | 125894532 | 1 | chr9 | NT_019501 | AL645768 | 125957134 | 3 | 12521 | 9850 | 3264 | 25635 |
| S/G/Y/R/B/O |
NT_019501 | AL645768 | 125957134 | 3 | chr9 | NT_019501 | AL603650 | 126002774 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_019501 | AL603650 | 126002774 | 3 | chr9 | NT_019501 | AL353611 | 126132240 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_019501 | AL353611 | 126132240 | 3 | chr9 | NT_019501 | AL159992 | 126235212 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_019501 | AL353611 | 126132240 | 3 | chr9 | NT_019501 | AC022606 | 126306285 | 1 | 45000 | 2391 | 1374 | 48765 |
| S/G/Y/R/B/O |
NT_019501 | AL159992 | 126235212 | 3 | chr9 | NT_019501 | AC022606 | 126306285 | 1 | 59894 | 3882 | 2588 | 66364 |
| S/G/Y/R/B/O |
NT_019501 | AC022606 | 126306285 | 1 | chr9 | NT_019501 | AL390778 | 126307947 | 2 | 45053 | 4398 | 2108 | 51559 |
| S/G/Y/R/B/O |
NT_019501 | AC022606 | 126306285 | 1 | chr9 | NT_019501 | AL353611 | 126132240 | 3 | 45000 | 2391 | 1374 | 48765 |
| S/G/Y/R/B/O |
NT_019501 | AL390778 | 126307947 | 2 | chr9 | NT_019501 | AL353615 | 126527559 | 1 | 34199 | 0 | 0 | 34199 |
| S/G/Y/R/B/O |
NT_019501 | AL353615 | 126527559 | 1 | chr9 | NT_019501 | AL161452 | 126632673 | 3 | 27349 | 0 | 0 | 27349 |
| S/G/Y/R/B/O |
NT_019501 | AL353615 | 126527559 | 1 |   |   | AC016427 | 126527559 | 1 | 22594 | 0 | 0 | 22594 |
| S/G/Y/R/B/O |
NT_019501 | AL161452 | 126632673 | 3 | chr9 | NT_019501 | AL354761 | 126785904 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_019501 | AL161452 | 126632673 | 3 |   |   | AC000396 | 126307947 | 3 | 37966 | 0 | 0 | 37966 |
| S/G/Y/R/B/O |
NT_019501 | AL161452 | 126632673 | 3 |   |   | AC016427 | 126307947 | 1 | 119055 | 2732 | 77 | 121864 |
| S/G/Y/R/B/O |
NT_019501 | AL161452 | 126632673 | 3 |   |   | AJ251029 | 126307947 | 3 | 10549 | 0 | 0 | 10549 |
| S/G/Y/R/B/O |
NT_019501 | AL354761 | 126785904 | 3 | chr9 | NT_019501 | AL158822 | 126877310 | 2 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_019501 | AL354761 | 126785904 | 3 |   |   | AC016427 | 126785904 | 1 | 15358 | 1737 | 0 | 17095 |
| S/G/Y/R/B/O |
NT_019501 | AL158822 | 126877310 | 2 | chr9 | NT_019501 | AL353636 | 127062646 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_019501 | AL353636 | 127062646 | 3 | chr9 | NT_019501 | AL355574 | 127132184 | 2 | 39257 | 0 | 0 | 39257 |
| S/G/Y/R/B/O |
NT_019501 | AL355574 | 127132184 | 2 | chr9 | NT_019501 | AL591038 | 127267834 | 3 | 0 | 1926 | 0 | 1926 |
| S/G/Y/R/B/O |
NT_019501 | AL591038 | 127267834 | 3 | chr9 | NT_019501 | AL138781 | 127319129 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_019501 | AL138781 | 127319129 | 3 |   |   |   |   |   |   |   |   |   |
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