Chromosome 9 - Clone Overlaps

Chromosome 9 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033218	NT_008413	NT_027081	NT_023974	NT_030040	NT_033214	NT_030759	NT_030753
NT_033213	NT_033210	NT_008389	NT_033219	NT_033217	NT_029359	NT_033209	NT_033206
NT_033208	NT_033212	NT_033205	NT_033203	NT_031832	NT_033211	NT_033207	NT_008580
NT_023935	NT_028278	NT_023975	NT_023946	NT_023932	NT_024010	NT_033202	NT_008476
NT_033216	NT_008470	NT_008438	NT_017568	NT_029366	NT_008338	NT_031835	NT_017539
NT_008554	NT_023969	NT_030058	NT_019501	NT_033215	NT_024000	NT_023929	NT_023989

NT_017568

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1	chr9	NT_017568	AL449105	104136939	1	0	0	0	0
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1	chr9	NT_017568	AL162727	104605859	3	10344	0	0	10344
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1	chr9	NT_017568	AL359455	104522096	3	31867	0	0	31867
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1			AC001643	86086442	3	12893	0	0	12893
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1			AC002098	86086442	3	36610	0	0	36610
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1			AC002319	86086442	3	23053	0	2106	25159
S/G/Y/R/B/O	NT_017568	AC002320	104076844	1			AJ251025	86086442	3	13589	0	0	13589
S/G/Y/R/B/O	NT_017568	AL449105	104136939	1	chr9	NT_017568	AL449305	104225774	3	72033	0	0	72033
S/G/Y/R/B/O	NT_017568	AL449305	104225774	3	chr9	NT_017568	AL137066	104386378	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL137066	104386378	3	chr9	NT_017568	AL359455	104522096	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL137066	104386378	3			X64467	104225774	3	15843	0	0	15843
S/G/Y/R/B/O	NT_017568	AL359455	104522096	3	chr9	NT_017568	AL162727	104605859	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL359455	104522096	3	chr9	NT_017568	AC002320	104076844	1	31867	0	0	31867
S/G/Y/R/B/O	NT_017568	AL162727	104605859	3	chr9	NT_017568	AL157702	104715958	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL162727	104605859	3	chr9	NT_017568	AC002320	104076844	1	10344	0	0	10344
S/G/Y/R/B/O	NT_017568	AL162727	104605859	3			AC022644	104076844	1	52031	0	3521	55552
S/G/Y/R/B/O	NT_017568	AL157702	104715958	3	chr9	NT_017568	AL162393	104876848	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL157702	104715958	3			AC022644	104522096	1	74607	22930	3618	101155
S/G/Y/R/B/O	NT_017568	AL162393	104876848	3	chr9	NT_017568	AL137850	105061050	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL137850	105061050	3	chr9	NT_017568	AL445543	105186792	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL137850	105061050	3			AC011161	104715958	1	92283	13148	0	105431
S/G/Y/R/B/O	NT_017568	AL445543	105186792	3	chr9	NT_017568	AL356796	105327019	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL445543	105186792	3			AC011161	105186792	1	76917	5783	7030	89730
S/G/Y/R/B/O	NT_017568	AL445543	105186792	3			AC024555	105186792	1	49628	1823	0	51451
S/G/Y/R/B/O	NT_017568	AL356796	105327019	3	chr9	NT_017568	AL138895	105452592	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL356796	105327019	3			AC024555	105061050	1	97272	0	10557	107829
S/G/Y/R/B/O	NT_017568	AL356796	105327019	3			AF336382	105061050	1	69667	0	1597	71264
S/G/Y/R/B/O	NT_017568	AL138895	105452592	3	chr9	NT_017568	AL160275	105582884	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL138895	105452592	3			AF336382	105061050	1	102659	0	0	102659
S/G/Y/R/B/O	NT_017568	AL160275	105582884	3	chr9	NT_017568	AL390240	105772493	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL160275	105582884	3			AL645562	105452592	1	70359	0	50222	120581
S/G/Y/R/B/O	NT_017568	AL390240	105772493	3	chr9	NT_017568	AL133412	105864369	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL390240	105772493	3			AL645562	105864369	1	29963	0	56713	86676
S/G/Y/R/B/O	NT_017568	AL133412	105864369	3	chr9	NT_017568	AL162425	106021086	3	0	2000	0	2000
S/G/Y/R/B/O	NT_017568	AL162425	106021086	3	chr9	NT_017568	AL355601	106196814	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL162425	106021086	3			AL353589	105864369	1	63431	0	0	63431
S/G/Y/R/B/O	NT_017568	AL355601	106196814	3	chr9	NT_017568	AB020869	106340236	3	0	1996	0	1996
S/G/Y/R/B/O	NT_017568	AL355601	106196814	3			AL353589	106340236	1	101898	5535	0	107433
S/G/Y/R/B/O	NT_017568	AB020869	106340236	3	chr9	NT_017568	AB020870	106438238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020869	106340236	3			AL714001	106196814	1	11980	2933	4188	19101
S/G/Y/R/B/O	NT_017568	AB020870	106438238	3	chr9	NT_017568	AB020871	106538238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020870	106438238	3			AL714001	106196814	1	50905	2469	3372	56746
S/G/Y/R/B/O	NT_017568	AB020871	106538238	3	chr9	NT_017568	AB020872	106638238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020871	106538238	3			AL691420	106196814	1	49401	0	0	49401
S/G/Y/R/B/O	NT_017568	AB020871	106538238	3			AL714001	106196814	1	39981	0	21125	61106
S/G/Y/R/B/O	NT_017568	AB020872	106638238	3	chr9	NT_017568	AB020873	106738238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020872	106638238	3			AL691420	106196814	1	99274	0	0	99274
S/G/Y/R/B/O	NT_017568	AB020873	106738238	3	chr9	NT_017568	AB020874	106838238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020873	106738238	3			AL691420	106196814	1	25133	0	0	25133
S/G/Y/R/B/O	NT_017568	AB020874	106838238	3	chr9	NT_017568	AB020875	106938238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020875	106938238	3	chr9	NT_017568	AB020876	107038238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020875	106938238	3			AC018530	106196814	1	28722	0	0	28722
S/G/Y/R/B/O	NT_017568	AB020876	107038238	3	chr9	NT_017568	AB020877	107138238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020876	107038238	3			AC018530	106196814	1	85882	0	0	85882
S/G/Y/R/B/O	NT_017568	AB020876	107038238	3			AL691426	106196814	1	66799	0	0	66799
S/G/Y/R/B/O	NT_017568	AB020877	107138238	3	chr9	NT_017568	AB020878	107238238	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AB020877	107138238	3			AC018530	106196814	1	12827	0	0	12827
S/G/Y/R/B/O	NT_017568	AB020877	107138238	3			AL691426	106196814	1	99697	0	0	99697
S/G/Y/R/B/O	NT_017568	AB020878	107238238	3	chr9	NT_017568	AL353141	107348763	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AB020878	107238238	3			AL691426	107348763	1	12263	0	2951	15214
S/G/Y/R/B/O	NT_017568	AL353141	107348763	3	chr9	NT_017568	AL137024	107366239	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL137024	107366239	3	chr9	NT_017568	AL669963	107523669	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL137024	107366239	3			AC007940	107366239	1	39082	2061	0	41143
S/G/Y/R/B/O	NT_017568	AL137024	107366239	3			AC032004	107366239	1	52892	1552	0	54444
S/G/Y/R/B/O	NT_017568	AL669963	107523669	3	chr9	NT_017568	AL133282	107524882	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL133282	107524882	3	chr9	NT_017568	AL133284	107653408	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL133282	107524882	3			AC007940	107366239	1	122650	0	0	122650
S/G/Y/R/B/O	NT_017568	AL133282	107524882	3			AC032004	107366239	1	100204	14174	4524	118902
S/G/Y/R/B/O	NT_017568	AL133284	107653408	3	chr9	NT_017568	AL157829	107808774	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL133284	107653408	3			AC015464	125615345	1	74154	0	10647	84801
S/G/Y/R/B/O	NT_017568	AL157829	107808774	3	chr9	NT_017568	AL392085	107971249	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL157829	107808774	3			AC015464	107808774	1	91025	3836	0	94861
S/G/Y/R/B/O	NT_017568	AL157829	107808774	3			AL162589	107653408	1	17885	1365	0	19250
S/G/Y/R/B/O	NT_017568	AL392085	107971249	3	chr9	NT_017568	AL354981	108130985	1	46416	0	0	46416
S/G/Y/R/B/O	NT_017568	AL392085	107971249	3			AL162589	107808774	1	101279	0	7753	109032
S/G/Y/R/B/O	NT_017568	AL354981	108130985	1	chr9	NT_017568	AL355608	108239603	3	21199	0	0	21199
S/G/Y/R/B/O	NT_017568	AL354981	108130985	1			AL162589	108130985	1	28007	0	0	28007
S/G/Y/R/B/O	NT_017568	AL355608	108239603	3	chr9	NT_017568	AL358792	108372193	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL358792	108372193	3	chr9	NT_017568	AL445644	108537124	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL358792	108372193	3			AL356386	108239603	1	32292	0	0	32292
S/G/Y/R/B/O	NT_017568	AL445644	108537124	3	chr9	NT_017568	AL161630	108574687	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL445644	108537124	3			AL356386	108574687	1	39560	0	0	39560
S/G/Y/R/B/O	NT_017568	AL161630	108574687	3	chr9	NT_017568	AL160272	108775557	1	12193	0	0	12193
S/G/Y/R/B/O	NT_017568	AL161630	108574687	3			AL356386	108775557	1	108118	0	0	108118
S/G/Y/R/B/O	NT_017568	AL160272	108775557	1	chr9	NT_017568	AL354754	108918541	3	38615	0	0	38615
S/G/Y/R/B/O	NT_017568	AL160272	108775557	1			AC060827	108537124	1	51877	0	0	51877
S/G/Y/R/B/O	NT_017568	AL160272	108775557	1			AF177765	108537124	3	18952	0	0	18952
S/G/Y/R/B/O	NT_017568	AL354754	108918541	3	chr9	NT_017568	AL445663	109034073	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL354754	108918541	3			AC060827	108918541	1	52130	4644	40365	97139
S/G/Y/R/B/O	NT_017568	AL354754	108918541	3			AC084248	108918541	1	13181	2249	1416	16846
S/G/Y/R/B/O	NT_017568	AL445663	109034073	3	chr9	NT_017568	AL158831	109226199	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL445663	109034073	3			AC084248	109034073	1	154192	0	0	154192
S/G/Y/R/B/O	NT_017568	AL445663	109034073	3			AL445069	108918541	1	141439	0	0	141439
S/G/Y/R/B/O	NT_017568	AL158831	109226199	3	chr9	NT_017568	AL365195	109386899	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL158831	109226199	3			AL445069	109386899	1	50995	0	0	50995
S/G/Y/R/B/O	NT_017568	AL365195	109386899	3	chr9	NT_017568	AL445440	109473819	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL445440	109473819	3	chr9	NT_017568	AL355592	109637652	3	0	1991	0	1991
S/G/Y/R/B/O	NT_017568	AL355592	109637652	3	chr9	NT_017568	AL589703	109808102	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL589703	109808102	3	chr9	NT_017568	AL157780	109854799	2	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL157780	109854799	2	chr9	NT_017568	AL512602	110012913	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL512602	110012913	3	chr9	NT_017568	AL445310	110046100	3	0	1997	0	1997
S/G/Y/R/B/O	NT_017568	AL445310	110046100	3	chr9	NT_017568	AL353773	110220093	3	0	0	101	101
S/G/Y/R/B/O	NT_017568	AL445310	110046100	3			AC006239	110046100	3	134592	0	0	134592
S/G/Y/R/B/O	NT_017568	AL353773	110220093	3	chr9	NT_017568	AL138894	110311861	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL353773	110220093	3			AC006239	110012913	3	59958	0	0	59958
S/G/Y/R/B/O	NT_017568	AL138894	110311861	3	chr9	NT_017568	AL353630	110464127	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AL353630	110464127	3	chr9	NT_017568	AC006288	110545593	3	0	0	100	100
S/G/Y/R/B/O	NT_017568	AC006288	110545593	3	chr9	NT_017568	AL445683	110765711	3	52731	0	0	52731
S/G/Y/R/B/O	NT_017568	AL445683	110765711	3	chr9	NT_017568	AL354931	110893376	3	0	1992	0	1992
S/G/Y/R/B/O	NT_017568	AL354931	110893376	3	chr9	NT_017568	AL441989	111018191	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL441989	111018191	3	chr9	NT_017568	AL355589	111121259	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL355589	111121259	3	chr9	NT_017568	AL592549	111264658	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL355589	111121259	3			AC006952	110893376	3	53262	0	0	53262
S/G/Y/R/B/O	NT_017568	AL592549	111264658	3	chr9	NT_017568	AL353736	111391271	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL592549	111264658	3			AC006952	110893376	3	128612	0	0	128612
S/G/Y/R/B/O	NT_017568	AL353736	111391271	3	chr9	NT_017568	AL391870	111538143	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL353736	111391271	3			AC006952	110893376	3	41356	0	0	41356
S/G/Y/R/B/O	NT_017568	AL353736	111391271	3			AC110007	110893376	1	47354	0	0	47354
S/G/Y/R/B/O	NT_017568	AL391870	111538143	3	chr9	NT_017568	AL590642	111582515	3	2000	0	0	2000
S/G/Y/R/B/O	NT_017568	AL391870	111538143	3			AC110007	110893376	1	41669	0	0	41669
S/G/Y/R/B/O	NT_017568	AL590642	111582515	3	chr9	NT_017568	AL138836	111653664	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL590642	111582515	3			AC110007	111582515	1	31270	0	32637	63907
S/G/Y/R/B/O	NT_017568	AL590642	111582515	3			AL353761	111582515	1	45475	4532	16379	66386
S/G/Y/R/B/O	NT_017568	AL138836	111653664	3	chr9	NT_017568	AL161911	111840145	3	0	0	0	0
S/G/Y/R/B/O	NT_017568	AL138836	111653664	3	chr9	NT_017568	AC015881	111949321	1	151384	1717	1091	154192
S/G/Y/R/B/O	NT_017568	AL138836	111653664	3			AC110007	111949321	1	13745	0	0	13745
S/G/Y/R/B/O	NT_017568	AL138836	111653664	3			AL353761	111949321	1	74946	0	0	74946
S/G/Y/R/B/O	NT_017568	AL161911	111840145	3	chr9	NT_017568	AC015881	111949321	1	26321	0	0	26321
S/G/Y/R/B/O	NT_017568	AL161911	111840145	3			AL354792	111949321	1	97438	0	0	97438
S/G/Y/R/B/O	NT_017568	AC015881	111949321	1
S/G/Y/R/B/O	NT_017568	AC015881	111949321	1	chr9	NT_017568	AL138836	111653664	3	151384	1717	1091	154192
S/G/Y/R/B/O	NT_017568	AC015881	111949321	1			AL353761	111840145	1	34830	0	2792	37622
S/G/Y/R/B/O	NT_017568	AC015881	111949321	1			AL354792	111840145	1	14579	0	0	14579