Archaea Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of archaea only.

See also: hub access, assembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser		 ncbiRefSeq xenoRefGene augustus
genes		 Ensembl
genes		 gc5 base gaps assembly
sequences		 Repeat
Masker		 TRF
simpleRepeat		 window
Masker		 cpg
islands
1 Methanobrevibacter ruminantium (M1 2010)
GCF_000024185.1		 n/a n/a n/a n/a 32.64
(100.00 %)		 n/a 1
(100.00 %)		 n/a 2,352
(5.31 %)		 14,512
(22.42 %)		 4
(0.09 %)
2 Methanococcus voltae (A3 2010)
GCF_000006175.1		 n/a n/a n/a n/a 28.59
(100.00 %)		 n/a 1
(100.00 %)		 n/a 2,091
(3.98 %)		 15,289
(31.44 %)		 6
(0.36 %)
3 Methanopyrus kandleri (AV19 2002)
GCF_000007185.1		 n/a n/a n/a n/a 61.16
(100.00 %)		 n/a 1
(100.00 %)		 n/a 33
(0.06 %)		 8,324
(9.42 %)		 1
(100.00 %)
4 Methanosarcina acetivorans (C2A 2002)
GCF_000007345.1		 n/a n/a n/a n/a 42.68
(100.00 %)		 n/a 1
(100.00 %)		 n/a 2,019
(2.52 %)		 22,860
(11.12 %)		 736
(7.97 %)
TOTALS:total assembly count 4

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 600 assemblies assembly stats track stats
Mammals 689 assemblies assembly stats track stats
Birds 441 assemblies assembly stats track stats
Fishes 500 assemblies assembly stats track stats
other vertebrates 322 assemblies assembly stats track stats
Invertebrates 1195 assemblies assembly stats track stats
Plants 340 assemblies assembly stats track stats
Fungi 932 assemblies assembly stats track stats
Viruses 708 assemblies assembly stats track stats
Archaea 4 assemblies assembly stats track stats
Bacteria 5538 assemblies assembly stats track stats
legacy/superseded 685 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 1303 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 464 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 1633 assemblies assembly stats track stats