Fish Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of fish only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Acadian redfish (fSebFas1 primary hap 2024 refseq) Sebastes fasciatus GCF_043250625.1_fSebFas1.pri 204 833,851,473 472 84,201 37.07
2 alewife (anadromous, Long Island Sound Yale_2024_CS 2024) Alosa pseudoharengus GCF_046254945.1_YU_APseudo_1.1 329 1,050,070,452 1,061 207,652 52.49
3 alligator pipefish (LvHL_M 2021) Syngnathoides biaculeatus GCF_019802595.1_ASM1980259v1 143 636,535,704 144 14,400 38.03
4 allis shad Alosa alosa GCF_017589495.1_AALO_Geno_1.1 1,095 854,464,681 1,541 767,536 38.87
5 Amazon molly Poecilia formosa GCF_000485575.1_Poecilia_formosa-5.1.2 3,985 748,923,461 36,429 34,735,552 26.04
6 amberjack S.aureovittata (China HTS-2021-v1 2021) Seriola aureovittata GCF_021018895.1_ASM2101889v1 31 647,095,223 150 75,500 26.68
7 American shad (fAloSap1 alternate hap 2021) Alosa sapidissima GCA_018492705.1_fAloSap1.alt 5,410 852,425,339 1 20 38.65
8 American shad (primary hap 2021) Alosa sapidissima GCF_018492685.1_fAloSap1.pri 74 903,581,644 1,639 4,995,812 39.49
9 Andian cavefish (hap1 2023 genbank) Trichomycterus rosablanca GCA_030014385.1_fTriRos1.hap1 349 1,045,025,885 198 39,600 49.04
10 Andian cavefish (hap1 2023 refseq) Trichomycterus rosablanca GCF_030014385.1_fTriRos1.hap1 349 1,045,025,885 198 39,600 49.04
11 annual killifish Austrofundulus limnaeus GCF_001266775.1_Austrofundulus_limnaeus-1.0 29,784 866,963,076 1,025,519 172,836,531 28.75
12 Antarctic jonasfish (primary hap 2024) Notolepis coatsorum GCA_963971535.1_fNotCoa1.1 5,983 3,427,809,033 15,113 3,020,567 68.42
13 Antarctic lanternfish (alternate hap 2023) Electrona antarctica GCA_951214905.1_fEleAnt2.1_alternate_haplotype 11,436 1,301,265,211 0 0 47.62
14 Antarctic lanternfish (primary hap 2023) Electrona antarctica GCA_951216825.1_fEleAnt2.1 1,901 1,427,445,741 3,179 635,800 52.88
15 Antarctic spiny plunderfish (primary hap 2020) Harpagifer antarcticus GCA_902827135.1_fHarAnt1.1 1,541 941,503,312 1,039 113,043 43.03
16 Arctic char (2024) Salvelinus alpinus GCF_045679555.1_SLU_Salpinus.1 939 2,367,887,750 3,854 385,400 56.53
17 Arctic char (CBP00131 primary hap 2024) Salvelinus alpinus oquassa GCA_036784965.1_fSalAlp2_p1.0 1,169 2,129,031,653 3,235 647,000 58.15
18 Arctic char (IW2-2015 2018) Salvelinus sp. IW2-2015 GCF_002910315.2_ASM291031v2 15,253 2,169,549,916 1,718,015 148,387,905 44.87
19 Aristotle's catfish (alternate hap 2022) Silurus aristotelis GCA_946807865.1_fSilAri3.1_alternate_haplotype 7,617 713,076,206 0 0 40.74
20 Aristotle's catfish (primary hap 2022) Silurus aristotelis GCA_946808225.1_fSilAri3.1 241 800,118,513 795 159,000 42.15
21 Arkansas darter Etheostoma cragini GCF_013103735.1_CSU_Ecrag_1.0 4,664 643,078,674 35,052 3,314,141 26.64
22 arroyo chub (AC-1 alternate hap 2022) Gila orcuttii GCA_026230005.1_fGilOrc1.0.hap1 179 1,263,410,250 327 32,700 50.53
23 arroyo chub (AC-1 primary hap 2022) Gila orcuttii GCA_026230025.1_fGilOrc1.0.hap2 341 1,272,848,069 318 31,800 50.58
24 Asian bonytongue (2019) Scleropages formosus GCF_900964775.1_fSclFor1.1 72 784,563,014 145 41,360 26.53
25 Asian bonytongue (alternate hap) Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype 2,006 751,313,211 1 25 26.29
26 Asian redtail catfish (EC202008001 2021) Hemibagrus wyckioides GCF_019097595.1_SWU_Hwy_1.0 73 789,816,092 107 10,700 37.39
27 Atlantic bluefin tuna (primary hap 2024 genbank) Thunnus thynnus GCA_963924715.1_fThuThy2.1 120 799,063,593 468 93,600 33.12
28 Atlantic bluefin tuna (primary hap 2024 refseq) Thunnus thynnus GCF_963924715.1_fThuThy2.1 119 799,047,066 468 93,600 33.12
29 Atlantic cod (2019) Gadus morhua GCF_902167405.1_gadMor3.0 227 669,966,409 1,216 23,573,743 33.47
30 Atlantic cod (alternate hap) Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype 3,592 584,119,146 3 75 33.87
31 Atlantic halibut (2019 refseq) Hippoglossus hippoglossus GCF_009819705.1_fHipHip1.pri 57 596,792,615 290 3,413,390 24.17
32 Atlantic halibut (alternate hap 2019) Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt 4,053 676,690,381 62 3,468 24.50
33 Atlantic herring (v2) Clupea harengus GCF_900700415.2_Ch_v2.0.2 1,724 786,325,606 1,990 870,691 32.57
34 Atlantic horse mackerel (alternate hap 2021) Trachurus trachurus GCA_905171655.2_fTraTra1.2_alternate_haplotype 1,049 797,027,743 74 4,927 32.73
35 Atlantic horse mackerel (primary hap 2021) Trachurus trachurus GCA_905171665.2_fTraTra1.2 153 801,243,942 222 29,162 32.85
36 Atlantic mackerel (primary hap 2023 genbank) Scomber scombrus GCA_963691925.1_fScoSco1.1 666 764,157,853 1,489 297,822 29.96
37 Atlantic mackerel (primary hap 2023 refseq) Scomber scombrus GCF_963691925.1_fScoSco1.1 665 764,141,294 1,489 297,822 29.96
38 Atlantic salmon (refseq 2021) Salmo salar GCF_905237065.1_Ssal_v3.1 4,011 2,756,584,103 211 21,100 59.39
39 Atlantic salmon (Sally 2015) Salmo salar GCF_000233375.1_ICSASG_v2 232,152 2,966,861,068 138,207 348,002,350 51.87
40 Atlantic silverside (fMenMen1 hap1 2025) Menidia menidia GCA_048628825.1_ASM4862882v1 457 571,276,089 867 86,700 28.90
41 Atlantic silverside (fMenMen1 hap2 2025) Menidia menidia GCA_048544195.1_ASM4854419v1 567 553,547,304 804 80,400 28.19
42 Atlantic turbot (AOZZmale01 2020) Scophthalmus maximus GCF_013347765.1_ASM1334776v1 127 556,696,898 51 2,160 25.82
43 Australian ruff (RE-2024a hap1 2024) Arripis georgiana GCA_042242115.1_fArrGeo1.hap1 625 735,099,811 91 18,000 33.44
44 Australian ruff (RE-2024a hap2 2024) Arripis georgiana GCA_042242135.1_fArrGeo1.hap2 552 801,586,327 98 19,400 38.19
45 ballan wrasse (2016) Labrus bergylta GCF_900080235.1_BallGen_V1 13,466 805,480,521 257 137,791 30.40
46 ballan wrasse (primary hap 2024 genbank) Labrus bergylta GCA_963930695.1_fLabBer1.1 132 720,227,340 815 163,000 30.38
47 ballan wrasse (primary hap 2024 refseq) Labrus bergylta GCF_963930695.1_fLabBer1.1 131 720,210,020 815 163,000 30.38
48 banded archerfish (alternate hap 2021) Toxotes jaculatrix GCA_017976295.1_fToxJac2.alt 2,393 594,660,453 2 26 26.52
49 banded archerfish (primary hap 2021 refseq) Toxotes jaculatrix GCF_017976425.1_fToxJac2.pri 96 621,503,431 98 1,137,472 28.10
50 banded electric knifefish (BG-103 2025) Brachyhypopomus gauderio GCF_052324685.1_BGAUD_0.2 840 796,923,666 810 401,750 36.45
51 banded killifish (hap1 2024) Fundulus diaphanus GCA_037039145.1_fFunDia1.hap1 331 1,351,828,608 293 3,461,740 50.48
52 banded killifish (hap2 2024) Fundulus diaphanus GCA_037038625.1_fFunDia1.hap2 196 1,329,922,595 373 6,322,172 50.37
53 barbel (alternate hap 2022) Barbus barbus GCA_936446605.1_fBarBab1.1_alternate_haplotype 8,034 1,319,370,800 1 200 52.21
54 barbel (primary hap 2022) Barbus barbus GCA_936440315.1_fBarBab1.1 92 1,584,929,904 108 21,600 52.50
55 barramundi perch (ASB-BC8 2022) Lates calcarifer GCF_001640805.2_TLL_Latcal_v3 2,997 673,814,222 674 7,539,228 23.61
56 beardfish (hap1 2025) Polymixia lowei GCA_047511565.1_fPolLow2.hap1 327 675,344,950 752 150,427 30.33
57 beardfish (hap2 2025) Polymixia lowei GCA_047511595.1_fPolLow2.hap2 199 671,709,512 756 151,025 30.40
58 Bermuda beardfish (OG660 hap1 2025) Polymixia cf. hollisterae GCA_048537225.1_ASM4853722v1 846 722,757,191 481 94,400 32.95
59 Bermuda beardfish (OG660 hap2 2025) Polymixia cf. hollisterae GCA_048537235.1_ASM4853723v1 461 707,857,291 508 100,200 32.19
60 bicolor damselfish Stegastes partitus GCF_000690725.1_Stegastes_partitus-1.0.2 5,817 800,485,922 44,409 50,762,588 23.44
61 bight redfish (2022) Centroberyx gerrardi GCF_026898505.1_AGI_CSIRO_Cger_v1 8,310 735,610,683 0 0 29.23
62 bight redfish (hap1 2025) Centroberyx gerrardi GCA_048128805.1_fCenGer3.hap1.cur.20231027 279 779,177,424 699 139,800 31.86
63 bight redfish (hap2 2025) Centroberyx gerrardi GCA_048129085.1_fCenGer3.hap2.cur.20231027 204 774,057,239 680 136,000 32.03
64 black goby (alternate hap 2023) Gobius niger GCA_951799965.1_fGobNig1.1_alternate_haplotype 3,523 838,316,121 0 0 45.69
65 black goby (primary hap 2023) Gobius niger GCA_951799975.1_fGobNig1.1 298 870,572,126 636 127,200 40.54
66 black perch (LCO1_2020_lvr alternate hap 2022) Embiotoca jacksoni GCA_022578405.1_fEmbJac1.0.a 62,783 1,686,865,087 639 63,900 26.96
67 black perch (LCO1_2020_lvr primary hap 2022 refseq) Embiotoca jacksoni GCF_022577435.1_fEmbJac1.0.p 229 634,668,633 234 23,401 28.99
68 black porgy (SG-2024 2024) Acanthopagrus schlegelii GCA_041753875.1_ASM4175387v1 24 714,975,658 0 0 24.10
69 black rockcod Notothenia coriiceps GCF_000735185.1_NC01 38,657 636,613,682 59,164 13,288,261 29.51
70 black seabass (Rhode Island RG_2023a 2023) Centropristis striata GCF_030273125.1_C.striata_1.0 92 926,021,963 341 33,027 38.92
71 blackbelly eelpout (fLycPai1 haplotype 1 2023) Lycodopsis pacificus GCA_028021495.1_fLycPai1.hap1 461 661,271,547 373 74,600 30.40
72 blackbelly eelpout (fLycPai1 haplotype 2 2023) Lycodopsis pacificus GCA_028022725.1_fLycPai1.hap2 109 646,369,862 366 73,200 29.94
73 blackspot tuskfish (SL-2024 2025) Choerodon schoenleinii GCA_047301625.1_ASM4730162v1 43 865,958,939 11 1,100 30.05
74 blackstripe livebearer (line A6 2022) Poeciliopsis prolifica GCF_027474105.1_Auburn_PproV2 415 674,152,735 89 44,933 28.58
75 blacktail shiner (hap1 2024) Cyprinella venusta GCA_038021265.1_fCypVen1.hap1 673 918,162,819 709 131,200 46.85
76 blacktail shiner (hap2 2024) Cyprinella venusta GCA_038024135.1_fCypVen1.hap2 413 928,717,837 720 134,500 47.57
77 blue catfish (D&B 2022) Ictalurus furcatus GCF_023375685.1_Billie_1.0 43 825,475,682 171 16,147,546 44.46
78 blue tilapia (BGI-SZ) Oreochromis aureus GCF_005870065.1_ASM587006v1 12,952 918,953,803 53,539 93,301,056 23.12
79 blue tilapia (Guangdong) Oreochromis aureus GCF_013358895.1_ZZ_aureus 304 1,005,575,223 723 285,885 32.10
80 blue whiting (primary hap 2024) Micromesistius poutassou GCA_964030765.1_fMicPou1.1 3,832 520,636,573 3,055 611,000 35.17
81 bluestreak cleaner wrasse (JK-2023 2023) Labroides dimidiatus GCA_030710495.1_ASM3071049v1 57 726,375,676 211 20,176 30.23
82 bluestripe pipefish (RoL2022-K1 2023) Doryrhamphus excisus GCF_030265055.1_RoL_Dexc_1.0 57 519,378,276 12 240 41.17
83 blunt-snouted clingfish (alternate hap) Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype 7,674 759,272,921 1 31 42.46
84 blunt-snouted clingfish (v2 2020 genbank) Gouania willdenowi GCA_900634775.2_fGouWil2.2 442 937,169,869 1,160 14,353,515 42.93
85 Boeseman's rainbowfish (fMelBoe1 alternate hap 2021) Melanotaenia boesemani GCA_017639755.1_fMelBoe1.alt 3,194 764,404,102 45 60,336 28.42
86 Boeseman's rainbowfish (primary hap 2021) Melanotaenia boesemani GCF_017639745.1_fMelBoe1.pri 93 865,592,457 440 3,217,901 29.18
87 Bolin's lanternfish (primary hap 2024) Protomyctophum bolini GCA_963924005.1_fProBol1.1 951 1,148,224,649 1,785 357,000 47.04
88 bonti-bonti (fTelBon1 alternate hap 2022) Telmatherina bonti GCA_933228925.1_fTelBon1.1_alternate_haplotype 4,619 781,234,592 0 0 38.85
89 bonti-bonti (primary hap 2022) Telmatherina bonti GCA_933228915.1_fTelBon1.1 146 986,039,709 1,329 265,800 40.16
90 bony fish B.hirsutus (HB-005 2024) Brachionichthys hirsutus GCF_040956055.1_CSIRO-AGI_Bhir_v1 1,370 406,634,837 1,486 148,600 24.98
91 bony fish G.rarus (2020-XYJJ_v1 2022) Gobiocypris rarus GCA_023029165.1_ASM2302916v1 46 1,134,099,513 410 234,841 60.67
92 bony fish P.dabryanus (BB 2023) Paramisgurnus dabryanus GCF_030506205.1_PD_contigs_1.0 610 1,425,974,144 1 60 50.18
93 bony fish R.nasutus (DBWJ_T2T 2025) Rhinogobio nasutus GCA_048301585.1_ASM4830158v1 70 953,377,980 2 200 45.29
94 bony fish S.pulcher (SPU_LCO1_2020_fin primary hap 2022) Semicossyphus pulcher GCF_022749685.1_fSemPul1.0.p 178 794,106,426 8 807 31.94
95 bony fish T.vachellii (PV-2020 2023) Tachysurus vachellii GCF_030014155.1_HZAU_Pvac_v1 78 692,121,426 291 145,500 35.39
96 Borax Lake chub (OS27281-9 2025) Siphateles boraxobius GCF_051911475.1_OSU_SipBor_1 532 1,238,650,365 0 0 66.74
97 bowfin (hap1 2024 refseq) Amia calva GCF_036373705.1_fAmiCal2.hap1 389 989,103,751 97 19,400 37.74
98 bowfin (hap2 2024) Amia calva GCA_036365475.1_fAmiCal2.hap2 297 958,875,937 80 16,000 36.24
99 Brauer's lanternfish (alternate hap 2023) Gymnoscopelus braueri GCA_963281105.1_fGymBra2.1_alternate_haplotype 10,794 1,279,160,753 5 1,000 46.07
100 Brauer's lanternfish (primary hap 2023) Gymnoscopelus braueri GCA_963280865.1_fGymBra2.1 676 1,367,984,568 2,704 540,800 49.78
101 broad-nosed pipefish (SK-2024d hap1 2025) Syngnathus typhle GCA_048301445.1_SynTyp1_v1.hap1 152 368,300,239 78 7,800 36.58
102 broad-nosed pipefish (SK-2024d hap2 2025) Syngnathus typhle GCA_048301605.1_SynTyp1_v1.hap2 125 356,339,685 90 9,000 34.73
103 broad-nosed pipefish (Sweden RoL2023-S1 2023) Syngnathus typhle GCF_033458585.1_RoL_Styp_1.0 495 435,284,570 40 800 43.83
104 brook trout (EN_2023a 2023) Salvelinus fontinalis GCF_029448725.1_ASM2944872v1 2,721 2,496,185,110 4,299 4,308,856 57.12
105 brown-marbled grouper (2020) Epinephelus fuscoguttatus GCF_011397635.1_E.fuscoguttatus.final_Chr_v1 26 1,047,012,452 205 20,500 31.35
106 Burton's mouthbrooder (Broad 2011) Haplochromis burtoni GCF_000239415.1_AstBur1.0 7,994 831,398,301 61,073 132,461,904 20.26
107 Burton's mouthbrooder (NCSU 2021) Haplochromis burtoni GCF_018398535.1_NCSU_Asbu1 7,421 854,588,855 32,418 93,726,465 23.62
108 butterfish (fScaArg1 alternate hap 2021) Scatophagus argus GCA_020382915.1_fScaArg1.alt 1,592 563,244,951 4 52 21.38
109 butterfish (primary hap 2021) Scatophagus argus GCF_020382885.2_fScaArg1.pri 48 570,802,272 77 1,711,559 21.27
110 butterfly blenny (primary hap 2023) Blennius ocellaris GCA_963422515.1_fBleOce1.1 525 728,745,255 1,625 325,000 32.58
111 California grunion (hap1 2024) Leuresthes tenuis GCF_036924035.1_fLeuTen1.0.hap1 296 917,115,632 223 22,300 39.82
112 California sheephead (SPU_LCO1_2020_fin alternate hap 2022) Semicossyphus pulcher GCA_022749735.1_fSemPul1.0.a 13,198 1,095,728,264 2,679 267,900 32.04
113 California sheephead (SPU_LCO1_2020_fin primary hap 2022) Semicossyphus pulcher GCA_022749685.1_fSemPul1.0.p 179 794,122,974 8 807 31.94
114 channel bull blenny (2019 refseq) Cottoperca gobio GCF_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
115 channel bull blenny (alternate hap 2019) Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype 11,555 671,265,480 10 925 26.88
116 channel catfish (USDA103 2022) Ictalurus punctatus GCA_001660625.3_Coco_2.0 136 842,926,452 100 5,510,128 46.77
117 channel catfish (USDA103 v2.0 2022) Ictalurus punctatus GCF_001660625.3_Coco_2.0 137 842,942,949 100 5,510,128 46.73
118 cherry salmon (Uvic2021 2024) Oncorhynchus masou masou GCF_036934945.1_UVic_Omas_1.1 17,263 2,664,802,492 4,047 1,594,659 55.66
119 chevron butterflyfish (hap1 2024 refseq) Chaetodon trifascialis GCF_039877785.1_fChaTrf1.hap1 36 662,489,023 49 9,600 24.65
120 chevron butterflyfish (hap2 2024) Chaetodon trifascialis GCA_039877575.1_fChaTrf1.hap2 71 664,933,391 43 8,500 24.11
121 chichlid (S. diagramma) Simochromis diagramma GCF_900408965.1_fSimDia1.1 823 848,827,444 942 39,011 29.00
122 Chinaman-leatherjacket (Tasmania G7.1 2024) Nelusetta ayraudi GCF_046127955.1_CSIRO-AGI_Nayr_v1 396 576,472,122 0 0 37.76
123 chinamanfish (OG11 2025) Symphorus nematophorus GCA_048128715.1_fSymNem1.1_haplotype_2 60 1,079,709,985 72 13,200 33.07
124 chinamanfish (OG11 2025) Symphorus nematophorus GCA_048128725.1_fSymNem1.1_haplotype_1 86 1,079,363,760 70 13,300 32.88
125 Chinese cavefish (2022) Triplophysa rosa GCF_024868665.1_Trosa_1v2 1,039 684,821,613 9,510 9,903,649 43.83
126 Chinese large-mouth catfish (SWU-2019-XX 2020) Silurus meridionalis GCF_014805685.1_ASM1480568v1 286 742,596,447 597 1,345,608 37.56
127 Chinese sucker (Aquarium Trade MX2 2022) Myxocyprinus asiaticus GCF_019703515.2_UBuf_Myxa_2 353 2,340,864,798 224 112,000 59.93
128 Chinook salmon (v1 2018 female) Oncorhynchus tshawytscha GCF_002872995.1_Otsh_v1.0 14,028 2,425,709,133 272,151 66,933,393 47.70
129 Chinook salmon (v2 Ot180627B 2021 male rfseq) Oncorhynchus tshawytscha GCF_018296145.1_Otsh_v2.0 7,665 2,294,859,190 2,334 231,729 54.65
130 chub mackerel (fScoJap1 alternate hap 2022) Scomber japonicus GCA_027409835.1_fScoJap1.alt 2,162 783,090,595 1 39 30.75
131 chub mackerel (primary hap 2022 refseq) Scomber japonicus GCF_027409825.1_fScoJap1.pri 360 828,681,152 1,572 647,100 32.44
132 chum salmon (Oke142-1_Chum_Gynogen 2020) Oncorhynchus keta GCF_012931545.1_Oket_V1 25,265 1,853,104,330 242,238 86,386,492 46.35
133 chum salmon (PuntledgeMale-10-30-2019 2022) Oncorhynchus keta GCF_023373465.1_Oket_V2 14,075 2,556,477,726 3,433 341,979 55.78
134 climbing perch (alternate hap 2019) Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype 2,641 539,091,056 36 2,107,526 21.00
135 climbing perch (v1.3 2021) Anabas testudineus GCA_900324465.3_fAnaTes1.3 51 555,658,509 266 3,606,496 21.33
136 clown anemonefish (DU_AmpOce 2017) Amphiprion ocellaris GCF_002776465.1_AmpOce1.0 6,405 880,720,895 1,406 545,178 32.00
137 clown anemonefish (Okinawa individual 3 2022) Amphiprion ocellaris GCF_022539595.1_ASM2253959v1 354 863,484,803 1,454 136,641 35.40
138 coho salmon (150728-3 2019) Oncorhynchus kisutch GCF_002021735.2_Okis_V2 4,087 2,375,911,593 5,631 469,357 54.83
139 common bream (primary hap 2024) Abramis brama GCA_963993115.1_fAbrBra2.1 208 1,108,218,292 685 137,000 48.57
140 common carp (R8XR3 2021) Cyprinus carpio carpio GCA_905221575.1_Cypcar_WagV4.0 674 1,460,348,793 372 37,200 41.50
141 common carp (SPL01 2021) Cyprinus carpio GCF_018340385.1_ASM1834038v1 6,701 1,680,134,903 26,351 7,988,566 38.58
142 common dab (primary hap 2023) Limanda limanda GCF_963576545.1_fLimLim1.1 338 717,580,706 275 55,000 35.04
143 common dace (hap1.1 2025) Leuciscus leuciscus GCA_965113295.1_fLeuLeu2.hap1.1 876 1,198,377,133 1,202 240,400 42.69
144 common dace (hap2.1 2025) Leuciscus leuciscus GCA_965113325.1_fLeuLeu2.hap2.1 530 1,179,019,172 1,147 229,400 55.35
145 common seabream (hap1.1 2025) Pagrus pagrus GCA_965226575.1_fPagPag1.hap1.1 576 825,699,107 536 107,200 29.37
146 common seabream (hap2.1 2025) Pagrus pagrus GCA_965225695.1_fPagPag1.hap2.1 249 786,794,581 535 107,000 26.85
147 common seadragon (TA_2022b 2022) Phyllopteryx taeniolatus GCF_024500385.1_UOR_Ptae_1.2 1,259 652,173,514 196 3,920 40.24
148 common sole (alternate hap 2023) Solea solea GCA_958295035.1_fSolSol10.1_alternate_haplotype 1,318 627,818,797 0 0 31.70
149 common sole (primary hap 2023 refseq) Solea solea GCF_958295425.1_fSolSol10.1 242 643,757,955 373 74,600 32.91
150 common whitefish (fCorLav1.hap1.1 2024) Coregonus lavaretus GCA_964263955.1_fCorLav1.hap1.1 11,150 2,842,862,595 5,995 1,199,000 61.61
151 common whitefish (fCorLav1.hap2.1 2024) Coregonus lavaretus GCA_964263835.1_fCorLav1.hap2.1 3,980 2,352,365,286 4,689 937,818 61.14
152 convict blenny (fPhoLeu1 alternate hap 2021) Pholidichthys leucotaenia GCA_020510965.1_fPhoLeu1.alt 21,417 1,865,716,438 144 143,564 67.06
153 convict blenny (primary hap 2021) Pholidichthys leucotaenia GCA_020510985.1_fPhoLeu1.pri 512 6,032,307,556 2,580 52,780,824 48.95
154 copperband butterflyfish (fCheRos1 alternate hap 2021) Chelmon rostratus GCA_017976315.1_fCheRos1.alt 2,125 601,666,562 1 500 32.92
155 copperband butterflyfish (primary hap 2021) Chelmon rostratus GCF_017976325.1_fCheRos1.pri 29 644,208,431 60 11,380 21.59
156 corkwing wrasse (primary hap 2022) Symphodus melops GCA_947650265.1_fSymMel2.1 395 636,368,453 1,379 275,800 28.78
157 Corydoras catfish unclassified (C115 2021) Corydoras sp. C115 GCA_019802505.1_Lin1PacBio.ctg.fa.r3p3_pilon_3_oneline.fasta 2,080 699,660,186 0 0 45.33
158 crested bigscale (hap1.1 2025) Poromitra crassiceps GCA_964638095.1_fPorCra3.hap1.1 2,788 1,630,001,977 2,975 595,000 57.57
159 crested bigscale (hap2.1 2025) Poromitra crassiceps GCA_964638665.1_fPorCra3.hap2.1 1,407 1,511,638,839 2,894 578,800 56.40
160 crested weedfish (hap1 OG76 2025) Cristiceps australis GCA_049082185.1_fCriAus1.1_haplotype_1 793 619,674,967 1,180 234,700 29.97
161 crested weedfish (hap2 OG76 2025) Cristiceps australis GCA_049082045.1_fCriAus1.1_haplotype_2 513 559,096,705 1,089 215,900 29.02
162 crucian carp (alternate hap 2023) Carassius carassius GCA_963082795.1_fCarCar2.1_alternate_haplotype 3,713 209,623,727 0 0 46.45
163 crucian carp (primary hap 2023 refseq) Carassius carassius GCF_963082965.1_fCarCar2.1 277 1,684,296,438 832 166,400 45.86
164 cuckoo wrasse (primary hap 2023) Labrus mixtus GCF_963584025.1_fLabMix1.1 324 740,563,171 570 114,014 33.86
165 cunner (fTauAds1 alternate hap 2021) Tautogolabrus adspersus GCA_020745675.1_fTauAds1.alt.cur 1,476 695,716,069 31 74,261 30.23
166 cunner (primary hap 2021) Tautogolabrus adspersus GCA_020745685.1_fTauAds1.pri.cur 64 723,582,185 283 4,256,220 30.38
167 Dalai köbertrulling (WHDGS20190420 2020) Triplophysa dalaica GCF_015846415.1_ASM1584641v1 51 607,940,176 116 11,600 40.25
168 Danionella translucida (Bolton 2019) Danionella cerebrum GCA_007224835.1_ASM722483v1 27,639 735,303,417 8,366 9,600,144 35.07
169 Danionella translucida (fDanTra1 2020) Danionella cerebrum GCA_903798025.1_fDanTra1.1 11,344 657,340,729 18,487 38,677,057 28.85
170 dark-edged splitfin (DD_20200921_A 2022 refseq) Girardinichthys multiradiatus GCF_021462225.1_DD_fGirMul_XY1 72 1,150,004,004 409 6,172,100 38.37
171 delta smelt Hypomesus transpacificus GCF_021917145.1_fHypTra1 376 437,273,953 1,474 354,099 32.53
172 denticle herring (alternate hap 2019) Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype 1,972 457,704,509 4 226 27.74
173 denticle herring (v2 2020) Denticeps clupeoides GCA_900700375.2_fDenClu1.2 461 567,417,970 464 4,648,387 28.83
174 doctor fish G.rufa (2025) Garra rufa GCF_049309525.1_GarRuf1.0 1,000 1,391,285,389 14,924 7,496,371 52.96
175 dorado (hap1 2023) Salminus brasiliensis GCA_030448965.1_fSalBra1.hap1 182 1,078,246,036 641 20,261,167 36.11
176 dorado (hap2 2023 refseq) Salminus brasiliensis GCF_030463535.1_fSalBra1.hap2 103 1,066,483,687 726 9,072,217 36.78
177 double-spotted pufferfish T.bimaculatus (TB-2018 2019) Takifugu bimaculatus GCA_004026145.2_XU_Tbim_1.0 1,158 404,311,738 1,033 104,200 22.77
178 dwarf seahorse (Florida 2022) Hippocampus zosterae GCF_025434085.1_ASM2543408v3 213 544,521,268 79 1,580 41.86
179 eastern happy (primary hap 2024) Astatotilapia calliptera GCA_964374335.1_fAstCal68.1 31 933,429,770 40 4,500 32.72
180 eastern happy (v3 2021) Astatotilapia calliptera GCA_900246225.5_fAstCal1.3 249 880,445,568 490 1,186,663 35.92
181 electric eel (alternate hap 2020) Electrophorus electricus GCA_013347915.1_fEleEle1.alt 2,629 428,136,346 0 0 24.43
182 electric eel (MRS-EE1 2018 U Wisconsin) Electrophorus electricus GCF_003665695.1_Ee_SOAP_WITH_SSPACE 8,786 551,880,868 119,361 17,042,720 21.59
183 electric eel (primary hap 2020 refseq) Electrophorus electricus GCF_013358815.1_fEleEle1.pri 89 589,358,956 227 10,599,768 24.89
184 electric eel (QZ-2024a 2024) Electrophorus electricus GCA_041902795.1_ASM4190279v1 460 833,427,914 49 2,104,217 42.36
185 elephant fish B.brachyistius (T26 2022) Brienomyrus brachyistius GCF_023856365.1_BBRACH_0.4 1,425 988,088,817 234 112,552 35.02
186 emerald rockcod Trematomus bernacchii GCF_902827165.1_fTreBer1.1 864 867,125,071 932 117,692 40.13
187 Eurasian minnow (alternate hap 2023) Phoxinus phoxinus GCA_949152275.1_fPhoPho1.1_alternate_haplotype 4,941 925,610,136 8 1,600 44.35
188 Eurasian minnow (primary hap 2023) Phoxinus phoxinus GCA_949152265.1_fPhoPho1.1 125 950,498,056 881 176,200 44.44
189 European anchovy (BLACKSEA-1 2023) Engraulis encrasicolus GCF_034702125.1_IST_EnEncr_1.0 1,922 1,435,200,347 9,202 222,396 50.58
190 European chub (alternate hap 2023) Squalius cephalus GCA_949319155.1_fSquCep2.1_alternate_haplotype 7,425 979,250,430 12 2,400 48.14
191 European chub (primary hap 2023) Squalius cephalus GCA_949319135.1_fSquCep2.1 106 1,101,930,522 588 117,600 49.02
192 European conger (primary hap 2023 refseq) Conger conger GCF_963514075.1_fConCon1.1 380 1,136,402,888 1,009 201,800 35.55
193 European flounder (alternate hap 2023) Platichthys flesus GCA_949316195.1_fPlaFle2.1_alternate_haplotype 1,915 587,918,088 0 0 26.42
194 European flounder (primary hap 2023 genbank) Platichthys flesus GCA_949316205.1_fPlaFle2.1 109 597,138,466 482 96,400 27.15
195 European flounder (primary hap 2023 refseq) Platichthys flesus GCF_949316205.1_fPlaFle2.1 108 597,120,941 482 96,400 27.16
196 European perch Perca fluviatilis GCF_010015445.1_GENO_Pfluv_1.0 303 951,345,774 801 292,795 37.11
197 European plaice (alternate hap 2022) Pleuronectes platessa GCA_947347695.1_fPlePla1.1_alternate_haplotype 3,219 613,421,917 3 600 28.01
198 European plaice (primary hap 2022 refseq) Pleuronectes platessa GCF_947347685.1_fPlePla1.1 355 687,388,084 1,072 214,400 33.59
199 European seabass (2021) Dicentrarchus labrax GCF_905237075.1_dlabrax2021 303 695,910,406 272 1,022,065 26.22
200 European smelt (primary hap 2023 genbank) Osmerus eperlanus GCA_963692335.1_fOsmEpe2.1 1,008 508,737,883 2,462 492,400 35.91
201 European smelt (primary hap 2023 refseq) Osmerus eperlanus GCF_963692335.1_fOsmEpe2.1 1,007 508,721,272 2,462 492,400 35.92
202 European sprat (primary hap 2023) Sprattus sprattus GCA_963457725.1_fSprSpr1.1 387 840,332,306 1,501 300,226 35.52
203 fathead minnow Pimephales promelas GCF_016745375.1_EPA_FHM_2.0 911 1,066,429,022 5,594 141,038,611 35.72
204 flathead mullet Mugil cephalus GCF_022458985.1_CIBA_Mcephalus_1.1 24 634,849,760 445 222,500 24.79
205 flavescent peacock cichlid (primary hap 2025) Aulonocara stuartgranti GCA_965226115.1_fAulStu2.1 23 945,383,024 31 4,300 33.28
206 flier cichlid (alternate hap MPI-CPG 2019) Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h 9,292 1,034,011,644 13 209,959 30.50
207 flier cichlid (MPI-CPG 2019 refseq) Archocentrus centrarchus GCF_007364275.1_fArcCen1 188 932,930,362 744 16,903,477 30.69
208 freshwater garfish (fXenCan1 alternate hap 2020) Xenentodon cancila GCA_014839645.1_fXenCan1.alt 5,169 658,557,970 2 1,000 26.36
209 freshwater garfish (primary hap 2020) Xenentodon cancila GCA_014839995.1_fXenCan1.pri 410 736,214,936 1,373 7,503,584 27.54
210 giant grouper (andai-2023 2024) Epinephelus lanceolatus GCA_041903045.1_ASM4190304v1 176 1,089,387,278 7 3,500 33.30
211 giant grouper (Andai001 2019) Epinephelus lanceolatus GCF_005281545.1_ASM528154v1 4,201 1,087,415,941 23,415 39,254,828 30.31
212 gilthead seabream (alternate hap 2019) Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype 7,239 668,417,842 2 532 24.38
213 gilthead seabream (v2 2021) Sparus aurata GCA_900880675.2_fSpaAur1.2 176 833,595,063 1,050 342,268 29.60
214 golden-line barbel Sinocyclocheilus grahami GCF_001515645.1_SAMN03320097.WGS_v1.1 31,277 1,750,287,761 136,894 182,848,609 37.17
215 goldfish Carassius auratus GCF_003368295.1_ASM336829v1 6,216 1,820,635,050 2,247 224,700 40.21
216 grass carp (HZGC_01 2021) Ctenopharyngodon idella GCF_019924925.1_HZGC01 31 893,215,104 150 150,000 40.24
217 great blue-spotted mudskipper (Guang Dong 2022) Boleophthalmus pectinirostris GCF_026225935.1_ASM2622593v1 600 941,505,238 3,407 3,486,618 54.69
218 great blue-spotted mudskipper (pooled male+femail 2014 BGI) Boleophthalmus pectinirostris GCF_000788275.1_BP.fa 16,620 955,752,150 92,327 65,847,082 42.56
219 greater amberjack Seriola dumerili GCF_002260705.1_Sdu_1.0 34,656 677,686,174 9,742 5,561,840 24.75
220 greater argentine (alternate hap 2023) Argentina silus GCA_951799415.1_fArgSil1.1_alternate_haplotype 4,805 550,403,860 0 0 35.98
221 greater argentine (primary hap 2023) Argentina silus GCA_951799395.1_fArgSil1.1 1,024 670,765,936 1,752 350,400 39.30
222 greater pipefish (v1 alternate hap 2019) Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype 1,848 234,858,432 2 600 23.32
223 greater pipefish (v1.2 2020 refseq) Syngnathus acus GCF_901709675.1_fSynAcu1.2 87 324,331,233 43 13,700 25.95
224 greater pipefish (v2 2023 genbank) Syngnathus acus GCA_948146105.1_fSynAcu2.1 251 359,216,277 95 19,000 34.10
225 greater pipefish (v2 alternate haplotype 2023) Syngnathus acus GCA_948146095.1_fSynAcu2.1_alternate_haplotype 4,533 334,243,819 0 0 29.10
226 greater sand-eel (alternate hap 2023) Hyperoplus immaculatus GCA_949358355.1_fHypImm3.1_alternate_haplotype 4,952 763,769,615 0 0 38.84
227 greater sand-eel (primary hap 2023) Hyperoplus immaculatus GCA_949357725.1_fHypImm3.1 1,568 797,804,280 1,188 237,600 40.07
228 green swordtail Xiphophorus hellerii GCF_003331165.1_Xiphophorus_hellerii-4.1 87 732,906,125 661 2,127,807 28.89
229 grey gurnard (primary hap 2023) Eutrigla gurnardus GCA_963514095.1_fEutGur1.1 319 680,483,561 553 110,600 35.71
230 gudgeon (alternate hap 2023) Gobio gobio GCA_949357705.1_fGobGob1.1_alternate_haplotype 7,245 1,349,092,698 8 1,600 67.88
231 gudgeon (primary hap 2023) Gobio gobio GCA_949357685.1_fGobGob1.1 231 1,460,679,231 1,046 209,200 68.84
232 Gulf pipefish (Florida 2022) Syngnathus scovelli GCF_024217435.2_RoL_Ssco_1.2 495 428,400,902 11 220 43.65
233 Gulf pipefish (RoL_Ssco_1.1 Florida 2022 refseq) Syngnathus scovelli GCF_024217435.1_RoL_Ssco_1.1 496 428,432,749 11 220 43.65
234 Gulf pipefish (RoL_Ssco_1.2 Florida 2022 genbank) Syngnathus scovelli GCA_024217435.4_RoL_Ssco_1.2 496 428,417,373 11 220 43.65
235 guppy Poecilia reticulata GCF_000633615.1_Guppy_female_1.0_MT 2,767 731,621,225 458,354 67,451,939 25.67
236 honeycomb rockfish (fSebUmb1 alternate hap 2020) Sebastes umbrosus GCA_015220095.1_fSebUmb1.alt 2,131 765,970,641 21 855 37.65
237 honeycomb rockfish (primary hap 2020) Sebastes umbrosus GCF_015220745.1_fSebUmb1.pri 138 800,904,020 215 1,393,892 36.28
238 horned golden-line barbel Sinocyclocheilus rhinocerous GCF_001515625.1_SAMN03320098_v1.1 164,172 1,655,785,943 150,790 134,307,852 35.97
239 humpback grouper (ca_2020 2021) Cromileptes altivelis GCA_019925165.1_OUC_Cal_1.0 306 1,083,008,411 518 53,228 45.72
240 humphead wrasse Cheilinus undulatus GCF_018320785.1_ASM1832078v1 46 1,173,472,134 284 28,400 33.01
241 Indian glassy fish (alternate hap 2019) Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype 2,242 486,545,135 230 2,056,711 24.11
242 Indian glassy fish (v2 2020) Parambassis ranga GCA_900634625.2_fParRan2.2 157 551,029,983 1,523 10,561,548 25.10
243 Indian medaka Oryzias melastigma GCF_002922805.2_ASM292280v2 8,493 778,703,520 51,550 40,471,418 33.35
244 Indo-Pacific tarpon (2020) Megalops cyprinoides GCF_013368585.1_fMegCyp1.pri 207 959,258,046 63 283,098 22.11
245 Japanese flounder Paralichthys olivaceus GCF_001970005.1_Flounder_ref_guided_V1.0 9,525 643,911,827 40,314 122,165,179 17.39
246 Japanese flounder (ysfri-2021 2022) Paralichthys olivaceus GCF_024713975.1_ASM2471397v2 25 588,187,604 21 2,100 26.58
247 Japanese medaka Oryzias latipes GCF_002234675.1_ASM223467v1 25 734,057,086 491 491,000 34.95
248 jewelled blenny (2019) Salarias fasciatus GCF_902148845.1_fSalaFa1.1 203 797,507,141 602 10,447,897 26.61
249 jewelled blenny (alternate hap 2019) Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype 4,516 894,675,777 9 3,272,521 28.60
250 John dory (alternate hap 2023) Zeus faber GCA_960530785.1_fZeuFab8.1_alternate_haplotype 5,370 809,816,570 0 0 40.06
251 John dory (primary hap 2023) Zeus faber GCA_960531495.1_fZeuFab8.1 191 804,731,948 887 177,400 39.97
252 kelp grouper (mb 2019) Epinephelus moara GCF_006386435.1_YSFRI_EMoa_1.0 4,563 1,030,477,684 48,394 30,797,138 29.13
253 kelp perch (BFR_SWC_R1_liver_20210118 2023) Brachyistius frenatus GCF_029030835.1_ASM2903083v1 1,003 595,935,260 0 0 26.91
254 Korean giant-fin mudskipper (v1 alternate hap 2020 genbank) Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt 2,799 698,977,026 1 500 39.04
255 Korean giant-fin mudskipper (v1.2 primary hap 2023) Periophthalmus magnuspinnatus GCF_009829125.3_fPerMag1.2.pri 122 752,605,561 701 7,178,761 43.07
256 lake trout Salvelinus namaycush GCF_016432855.1_SaNama_1.0 4,121 2,345,513,378 3,264 326,400 54.51
257 lake whitefish (EN20210322 male 2021 Laval U) Coregonus clupeaformis GCF_018398675.1_ASM1839867v1 6,355 2,682,612,311 1,716 74,680 61.22
258 lake whitefish (EN_2021a female 2021 Laval U) Coregonus clupeaformis GCF_020615455.1_ASM2061545v1 7,334 2,753,287,365 1,159 120,877 61.18
259 lantern fish (primary hap 2024) Nannobrachium achirus GCA_963921795.1_fNanAch1.1 673 1,658,848,640 2,397 479,400 54.08
260 large yellow croaker Larimichthys crocea GCF_000972845.2_L_crocea_2.0 9,998 657,939,657 7,424 2,166,101 24.87
261 large-eye snaggletooth (alternate hap 2023) Borostomias antarcticus GCA_949987545.1_fBorAnt1.1_alternate_haplotype 5,761 788,134,964 0 0 42.72
262 large-eye snaggletooth (primary hap 2023) Borostomias antarcticus GCA_949987555.1_fBorAnt1.1 1,378 909,249,001 2,631 526,200 46.88
263 largemouth bass (2-A1 2021) Micropterus salmoides GCA_019677235.1_HNU_Msal_1.0 202 877,669,248 672 335,002 29.68
264 largemouth bass (LMB-PRFRI aquatic 2020) Micropterus salmoides GCF_014851395.1_ASM1485139v1 4,753 963,613,914 2,909 1,454,500 29.63
265 largescale foureyes (fAnaAna1 alternate hap 2020) Anableps anableps GCA_014839705.1_fAnaAna1.alt 5,088 445,542,990 0 0 27.42
266 largescale foureyes (primary hap 2020) Anableps anableps GCA_014839685.1_fAnaAna1.pri 33 867,632,993 107 306,559 29.88
267 leafy seadragon (BA_2022a 2022) Phycodurus eques GCF_024500275.1_UOR_Pequ_1.1 1,537 666,479,602 76 1,760 41.21
268 lemon sole (primary hap 2024) Microstomus kitt GCA_964266715.1_fMicKit1.1 1,581 752,333,918 409 81,800 39.40
269 leopard coralgrouper Plectropomus leopardus GCF_008729295.1_YSFRI_Pleo_2.0 94,260 895,705,288 3,611 15,810,414 29.38
270 leopard coralgrouper (2020) Plectropomus leopardus GCA_011397275.1_Pleo_1.0 110 787,600,493 1,076 538,000 29.87
271 leopard coralgrouper (mb 2020) Plectropomus leopardus GCA_008729295.2_YSFRI_Pleo_2.0 94,259 895,688,574 3,611 15,810,414 29.38
272 lesser salmon catfish (fNeoGra1 alternate hap 2023) Neoarius graeffei GCA_027579805.1_fNeoGra1.alt 6,590 2,195,086,485 3 67 62.71
273 lesser salmon catfish (primary hap 2023 refseq) Neoarius graeffei GCF_027579695.1_fNeoGra1.pri 38 2,341,916,362 334 13,260,140 71.56
274 lesser sand-eel (alternate hap 2023) Ammodytes marinus GCA_950004245.1_fAmmMar1.1_alternate_haplotype 3,619 756,335,084 1 200 38.09
275 lesser sand-eel (primary hap 2023) Ammodytes marinus GCA_949987685.1_fAmmMar1.1 617 777,835,610 1,017 203,400 39.22
276 lesser weever (primary hap 2023) Echiichthys vipera GCA_963691815.1_fEchVip8.1 133 800,398,249 606 121,200 33.26
277 limp eelpout (alternate hap 2023) Melanostigma gelatinosum GCA_949748265.1_fMelGel1.1_alternate_haplotype 2,698 629,798,166 2 400 30.28
278 limp eelpout (primary hap 2023) Melanostigma gelatinosum GCA_949748355.1_fMelGel1.1 534 661,975,483 589 119,200 33.26
279 live sharksucker (alternate hap 2019) Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype 1,405 528,272,450 19 224,651 22.09
280 live sharksucker (v2 2021) Echeneis naucrates GCA_900963305.2_fEcheNa1.2 38 544,229,243 140 599,356 21.82
281 longspined bullhead (.1 primary hap 2021) Taurulus bubalis GCA_910589615.1_fTauBub2.1 27 615,153,901 242 77,100 28.62
282 longspined bullhead (fTauBub2.1 alternate hap 2021) Taurulus bubalis GCA_910589325.1_fTauBub2.1_alternate_haplotype 1,778 614,755,631 0 0 28.10
283 lumpfish (alternate hap 2019) Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt 1,866 480,967,379 0 0 28.18
284 lumpfish (primary hap v2.1 2023 genbank) Cyclopterus lumpus GCA_963457625.1_fCycLum2.1 232 586,296,809 954 190,814 30.29
285 lumpfish (v1 primary hap 2019 refseq) Cyclopterus lumpus GCF_009769545.1_fCycLum1.pri 48 572,885,595 347 10,182,204 28.09
286 lyretail cichlid Neolamprologus brichardi GCF_000239395.1_NeoBri1.0 9,083 847,883,811 109,100 161,986,532 19.51
287 Malawi cichlid R.sp.'chilingali' (2024) Rhamphochromis sp. 'chilingali' GCA_963969265.1_fRhaChi2.1 82 921,184,210 422 84,400 38.20
288 mandarin fish (FFG_IHB_CAS 2021) Siniperca chuatsi GCF_020085105.1_ASM2008510v1 65 718,820,513 93 9,300 27.44
289 mandarin fish (RoL2022-P1 2023) Synchiropus splendidus GCF_027744825.2_RoL_Sspl_1.0 97 582,898,256 19 361 32.12
290 mangrove rivulus Kryptolebias marmoratus GCF_001649575.2_ASM164957v2 300 680,655,669 32,278 38,822,415 27.34
291 marbled rockcod (alternate hap 2023) Notothenia rossii GCA_949606865.1_fNotRos5.1_alternate_haplotype 8,737 1,005,523,998 0 0 45.04
292 marbled rockcod (primary hap 2023) Notothenia rossii GCA_949606895.1_fNotRos5.1 943 1,042,906,029 4,157 831,400 44.98
293 Mariana snailfish (Mariana Trench HS2019 2023) Pseudoliparis swirei GCF_029220125.1_NWPU_hadal_v1 200 626,455,521 974 874,774 37.78
294 Mexican tetra (2017 WashU) Astyanax mexicanus GCF_000372685.2_Astyanax_mexicanus-2.0 2,415 1,335,239,194 621 43,642,769 42.58
295 Mexican tetra (ESR-SI-001 2022) Astyanax mexicanus GCF_023375975.1_AstMex3_surface 109 1,373,169,186 14 7,000 47.33
296 Mexican tetra (Pach_M1 Pachon cave 2021) Astyanax mexicanus GCA_019721115.1_AMEX_1.1 195 1,378,811,567 334 165,606 47.76
297 Midas cichlid (2014) Amphilophus citrinellus GCA_000751415.1_Midas_v5 6,637 844,902,565 617,558 60,366,222 25.16
298 milkfish (2019) Chanos chanos GCF_902362185.1_fChaCha1.1 31 656,929,047 112 4,230,332 26.35
299 milkfish (alternate hap 2019) Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype 1,937 637,484,823 3 700 26.50
300 minispotted lanternfish (primary hap 2023) Gymnoscopelus microlampas GCA_963454915.1_fGymMic1.1 374 1,318,656,016 1,398 279,600 47.09
301 monkeyface prickleback (CVI_PGR_0920_01 alternate hap 2022) Cebidichthys violaceus GCA_023349535.1_fCebVio1.0.a 486 606,177,218 927 92,700 27.32
302 monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022) Cebidichthys violaceus GCA_023349555.1_fCebVio1.0.p 725 575,660,146 936 93,600 27.15
303 monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022) Cebidichthys violaceus GCF_023349555.1_fCebVio1.0.p 724 575,643,635 936 93,600 27.15
304 Monterrey platyfish Xiphophorus couchianus GCF_001444195.1_X_couchianus-1.0 68 688,541,509 229 1,031,462 28.28
305 mormyrid electric fish (MSU_618 2025) Paramormyrops kingsleyae GCF_048594095.1_PKINGS_0.4 407 933,939,706 249 24,900 29.37
306 mummichog (Maine) Fundulus heteroclitus GCF_000826765.1_Fundulus_heteroclitus-3.0.2 10,180 1,021,898,560 123,625 89,424,232 26.05
307 mummichog (U. Missouri) Fundulus heteroclitus GCF_011125445.2_MU-UCD_Fhet_4.1 1,031 1,203,505,739 2,820 1,407,874 33.01
308 New Zealand spotty (alternate hap 2019 genbank) Notolabrus celidotus GCA_009762545.1_fNotCel1.alt 3,286 770,553,912 0 0 33.61
309 New Zealand spotty (primary hap 2019 genbank) Notolabrus celidotus GCA_009762535.1_fNotCel1.pri 468 846,760,650 1,135 14,268,481 33.39
310 New Zealand spotty (primary hap refseq) Notolabrus celidotus GCF_009762535.1_fNotCel1.pri 467 846,744,125 1,135 14,268,481 33.39
311 Nile tilapia Oreochromis niloticus GCF_001858045.2_O_niloticus_UMD_NMBU 2,460 1,005,681,550 551 55,001 31.17
312 ninespine stickleback (alternate hap 2023) Pungitius pungitius GCA_949316245.1_fPunPun2.1_alternate_haplotype 1,934 413,337,341 0 0 27.13
313 ninespine stickleback (NSP_V7 2020) Pungitius pungitius GCF_902500615.1_NSP_V7 1,667 466,599,196 341 34,100 25.74
314 ninespine stickleback (primary hap 2023 genbank) Pungitius pungitius GCA_949316345.1_fPunPun2.1 175 480,450,674 738 147,600 28.40
315 ninespine stickleback (primary hap 2023 refseq) Pungitius pungitius GCF_949316345.1_fPunPun2.1 174 480,434,100 738 147,600 28.40
316 North African catfish (Netherlands MV-2021 2022) Clarias gariepinus GCF_024256425.1_CGAR_prim_01v2 48 969,620,777 0 0 44.81
317 North African catfish (Netherlands MV-2021 alternate hap 2022) Clarias gariepinus GCA_024256465.1_CGAR_Hap2 98 954,244,515 115 140,152 38.53
318 North African catfish (Netherlands MV-2021 primary hap 2022) Clarias gariepinus GCA_024256435.1_CGAR_Hap1 119 972,641,408 180 8,515 39.05
319 northern cavefish (hap1 2024) Amblyopsis spelaea GCA_046255685.1_fAmbSpe1.hap1 892 817,459,139 466 93,200 49.51
320 northern cavefish (hap2 2024) Amblyopsis spelaea GCA_046255725.1_fAmbSpe1.hap2 667 865,090,090 484 96,800 52.00
321 northern pike Esox lucius GCF_004634155.1_Eluc_v4 811 940,906,975 584 58,400 33.32
322 northern pike (alternate hap 2020) Esox lucius GCA_011004835.1_fEsoLuc1.alt 3,813 622,571,242 11 417,274 31.83
323 northern pike (primary hap 2020 refseq) Esox lucius GCF_011004845.1_fEsoLuc1.pri 53 918,748,614 112 1,022,735 32.97
324 northern snakehead (prfri 2023) Channa argus GCF_033026475.1_Channa_argus_male_v1.0 291 675,473,700 52 2,546 29.41
325 ocellated dragonet (captive hap1 2024) Neosynchiropus ocellatus GCA_044231665.1_SynOce1_v1.hap1 107 470,091,028 99 9,900 21.06
326 ocellated dragonet (captive hap2 2024) Neosynchiropus ocellatus GCA_044231645.1_SynOce1_v1.hap2 129 471,984,592 111 11,100 21.93
327 Old Calabar mormyrid (PKING1 2018) Paramormyrops kingsleyae GCF_002872115.1_PKINGS_0.1 4,666 799,417,351 49,579 63,880,082 20.88
328 old wife E.armatus (hap1 2024) Enoplosus armatus GCF_043641665.1_fEnoArm2.hap1 136 579,897,767 114 22,500 23.12
329 old wife E.armatus (hap2 2024) Enoplosus armatus GCA_043640875.1_fEnoArm2.hap2 94 578,326,983 100 19,800 22.89
330 orangethroat darter Etheostoma spectabile GCF_008692095.1_UIUC_Espe_1.0 3,119 854,806,606 101,221 4,031,177 31.23
331 orbiculate cardinalfish (2019) Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 340 1,342,662,642 1,844 3,566,081 48.65
332 orbiculate cardinalfish (alternate hap 2019) Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype 6,896 1,135,435,641 142 630,303 45.58
333 oriental weatherfish (2024) Misgurnus anguillicaudatus GCF_027580225.2_ASM2758022v2 61 1,120,313,161 110 55,000 45.48
334 oriental weatherfish (BS_2022a 2023) Misgurnus anguillicaudatus GCF_027580225.1_HAU_Mang_1.0 358 1,104,586,043 614 61,301 45.73
335 Osbeck's grenadier anchovy (Shantou hap1 2025) Coilia mystus GCA_048544215.1_fCoiMys1.hap1 180 803,134,922 1,177 117,700 38.65
336 Osbeck's grenadier anchovy (Shantou hap2 2025) Coilia mystus GCA_048544225.1_fCoiMys1.hap2 184 854,254,650 1,132 113,200 38.31
337 oyster pompano (Australia AG129_WGS33_773 2025) Trachinotus anak GCF_046630095.1_CSIRO_AGI_Tana_v1 150 665,989,892 0 0 24.79
338 P.nyererei 1_Seehausen Pundamilia nyererei GCF_000239375.1_PunNye1.0 7,233 830,129,318 60,817 131,372,167 20.67
339 Pacific bluefin tuna (20180606_amami#17_male 2023) Thunnus orientalis GCA_021601225.2_Tori_3.1 580 791,677,880 269 26,444 32.22
340 Pacific cod (2023) Gadus macrocephalus GCF_031168955.1_ASM3116895v1 24 555,697,652 4,826 482,163 38.54
341 Pacific halibut (PH-IPHC-18 2020) Hippoglossus stenolepis GCF_013339905.1_IPHC_HiSten_1.0 120 594,145,200 219 21,900 25.27
342 Pacific halibut (QCI-W04-F060 2022) Hippoglossus stenolepis GCF_022539355.2_HSTE1.2 53 602,165,188 1,131 325,822 24.80
343 Pacific saury (AMF1-May2022 2023) Cololabis saira GCF_033807715.1_fColSai1.1 759 1,146,362,327 900 450,000 44.02
344 panther danio (primary hap 2020) Danio aesculapii GCF_903798145.1_fDanAes4.1 342 1,381,485,597 1,821 16,316,683 56.15
345 parallel lanternfish (alternate hap 2024) Protomyctophum parallelum GCA_964188415.1_fProPar1.1_alternate_haplotype 23 1,013,731,500 4,955 991,000 46.52
346 parallel lanternfish (primary hap 2024) Protomyctophum parallelum GCA_964188405.1_fProPar1.1 24 1,235,328,005 2,729 545,800 48.26
347 Patagonian blennie (Puerto Natales JMC-PN-2008 2024) Eleginops maclovinus GCF_036324505.1_JC_Emac_rtc_rv5 27 606,306,633 380 190,000 25.60
348 pejerrey (fOdoBon6 haplotype 2 2023) Odontesthes bonariensis GCA_027942885.1_fOdoBon6.hap2 334 974,945,057 135 67,500 36.86
349 pejerrey (hap1 2023 genbank) Odontesthes bonariensis GCA_027942865.1_fOdoBon6.hap1 189 945,823,896 282 91,800 35.17
350 pejerrey (hap1 2023 refseq) Odontesthes bonariensis GCF_027942865.1_fOdoBon6.hap1 189 945,823,896 282 91,800 35.17
351 peladilla (fAplTae1 alternate hap 2021) Aplochiton taeniatus GCA_017639685.1_fAplTae1.alt 5,690 560,414,924 11 839 28.85
352 peladilla (primary hap 2021) Aplochiton taeniatus GCA_017639675.1_fAplTae1.pri 41 461,946,147 1,158 8,155,958 27.72
353 pencil smelt N.antarctica (primary hap 2024) Nansenia antarctica GCA_963989245.1_fNanAnt1.1 1,177 1,085,794,659 3,299 659,800 48.79
354 picturesque dragonet (SynPic1 hap1 2024) Synchiropus picturatus GCA_044231685.1_ASM4423168v1 355 500,467,214 122 12,200 25.26
355 picturesque dragonet (SynPic1 hap2 2024) Synchiropus picturatus GCA_044231675.1_ASM4423167v1 300 492,062,741 100 10,000 24.57
356 pike-perch Sander lucioperca GCF_008315115.2_SLUC_FBN_1.2 337 901,238,333 711 194,059 36.52
357 pinecone soldierfish (2019) Myripristis murdjan GCF_902150065.1_fMyrMur1.1 87 835,254,674 253 1,865,832 28.16
358 pinecone soldierfish (alternate hap 2019) Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype 2,193 819,084,930 6 688 27.94
359 pink cusk-eel (Tasmania CSIRO-AG114 2024) Genypterus blacodes GCF_046128005.1_CSIRO-AGI_Gbla_v1 598 463,765,610 0 0 26.53
360 pink salmon Oncorhynchus gorbuscha GCF_021184085.1_OgorEven_v1.0 19,028 2,690,283,663 5,213 1,188,012 57.36
361 ploughfish Gymnodraco acuticeps GCF_902827175.1_fGymAcu1.1 2,618 996,888,495 1,569 192,604 45.12
362 pollack (alternate hap 2023) Pollachius pollachius GCA_949987605.1_fPolPol2.1_alternate_haplotype 4,970 591,893,695 0 0 33.27
363 pollack (primary hap 2023) Pollachius pollachius GCA_949987615.1_fPolPol2.1 616 606,767,444 1,810 362,000 33.80
364 pond loach (2024) Paramisgurnus dabryanus GCF_030506205.2_PD_genome_1.1 220 1,043,485,661 1,120 224,000 44.67
365 predatory carp (Z2021 2022) Chanodichthys erythropterus GCF_024489055.1_ASM2448905v1 51 1,085,526,929 181 18,100 61.41
366 prehistoric monster fish (2019 refseq) Thalassophryne amazonica GCF_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
367 prehistoric monster fish (alternate hap 2019) Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype 19,579 1,767,810,094 8 248 58.58
368 rainbow smelt (fOsmMor3 primary hap 2024) Osmerus mordax GCA_038355195.1_fOsmMor3.pri 365 497,673,479 1,907 364,200 35.25
369 rainbow smelt (fOsmMor3 primary hap 2024) Osmerus mordax GCF_038355195.1_fOsmMor3.pri 366 497,690,099 1,907 364,200 35.24
370 rainbow trout (Arlee) Oncorhynchus mykiss GCF_013265735.2_USDA_OmykA_1.1 743 2,341,688,614 486 6,184,519 53.80
371 rainbow trout (Swanson) Oncorhynchus mykiss GCF_002163495.1_Omyk_1.0 131,961 2,178,999,613 427,894 251,515,894 44.07
372 Rankin cod (hap1 2025) Epinephelus rankini GCA_048129235.1_fEpiMut1.hap1.cur.20240206 386 1,035,398,499 21 4,200 31.27
373 Rankin cod (hap2 2025) Epinephelus rankini GCA_048129065.1_fEpiMut1.hap2.cur.20240206 199 1,018,963,042 33 6,400 42.18
374 razorback sucker (HMW12.3.18 2022) Xyrauchen texanus GCF_025860055.1_RBS_HiC_50CHRs 1,746 2,186,823,573 1,873 936,500 51.92
375 red drum (XU1910 2020) Sciaenops ocellatus GCA_014183145.1_ASM1418314v1 34,462 684,633,790 11,577 30,266,824 23.28
376 red seabream (2024) Pagrus major GCA_040436345.1_Pma_NU_1.0 24 785,972,034 278 27,800 34.90
377 red seabream (2024) Pagrus major GCF_040436345.1_Pma_NU_1.0 25 785,989,065 278 27,800 27.02
378 red-bellied piranha (fPygNat1 alternate hap 2020) Pygocentrus nattereri GCA_015220065.1_fPygNat1.alt 1,751 289,313,524 0 0 49.72
379 red-bellied piranha (Pna-1 2016) Pygocentrus nattereri GCF_001682695.1_Pygocentrus_nattereri-1.0.2 283,518 1,285,352,492 62,964 33,286,579 34.80
380 red-bellied piranha (primary hap 2020) Pygocentrus nattereri GCF_015220715.1_fPygNat1.pri 55 1,222,050,449 303 10,159,184 35.79
381 redfish (Tasmania AG114_WGS23_722 - 3 2025) Centroberyx affinis GCF_046629955.1_CSIRO-AGI_Caff_v1 6,232 774,638,115 0 0 30.21
382 reedfish (2021) Erpetoichthys calabaricus GCF_900747795.2_fErpCal1.3 169 3,613,551,144 1,431 29,707,657 47.53
383 reedfish (v1 alternate hap 2019) Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype 38,593 2,607,661,443 5 52,479 45.67
384 ringed pipefish (RoL2022-P2 2023) Dunckerocampus dactyliophorus GCF_027744805.1_RoL_Ddac_1.1 157 670,648,883 14 280 41.09
385 Rio pearlfish (Nwh7 v2 2021) Nematolebias whitei GCF_014905685.2_NemWhi1 18,998 1,218,316,901 100,521 97,663,390 42.85
386 river trout (v2 2021) Salmo trutta GCA_901001165.2_fSalTru1.2 1,441 2,371,880,186 3,941 73,600,705 55.89
387 roach minnow (alternate hap 2023) Rutilus rutilus GCA_951802655.1_fRutRut2.1_alternate_haplotype 4,606 1,042,711,183 6 1,200 48.42
388 roach minnow (primary hap 2023) Rutilus rutilus GCA_951802725.1_fRutRut2.1 85 1,100,195,650 471 94,200 49.02
389 rock gunnel (alternate hap 2021) Pholis gunnellus GCA_910591705.2_fPhoGun1.2_alternate_haplotype 2,165 590,303,236 1 500 25.85
390 rock gunnel (primary hap 2021) Pholis gunnellus GCA_910591455.2_fPhoGun1.2 101 588,696,950 418 137,000 25.63
391 rohu (BAU-BD-2019 2022) Labeo rohita GCF_022985175.1_IGBB_LRoh.1.0 2,870 1,126,558,565 5,144 181,047,225 41.98
392 Rosablanca catfish (hap2 2023) Trichomycterus rosablanca GCA_030015355.1_fTriRos1.hap2 302 996,754,446 192 38,400 48.41
393 rouch bullseye (RE-2024b hap1 2024 refseq) Pempheris klunzingeri GCF_042242105.1_fPemKlu1.hap1 441 646,252,061 87 17,200 24.57
394 rough bullseye (RE-2024b hap2 2024) Pempheris klunzingeri GCA_042242125.1_fPemKlu1.hap2 84 632,781,980 93 18,300 30.94
395 rudd (Europe DD20220513a primary hap 2022) Scardinius erythrophthalmus GCA_024453875.1_ASM2445387v1 110 1,135,838,337 418 88,160 49.98
396 rudd (fScaEry2.hap1.1 2024) Scardinius erythrophthalmus GCA_964197995.1_fScaEry2.hap1.1 755 1,229,666,150 836 167,200 51.27
397 sablefish (Golden Eagle Sablefish UVic2021 2023) Anoplopoma fimbria GCF_027596085.1_Afim_UVic_2022 7,493 653,543,715 723 71,904 28.31
398 sailfin molly Poecilia latipinna GCF_001443285.1_P_latipinna-1.0 17,986 815,142,410 41,735 135,369,525 22.54
399 salamanderfish (hap1 2025) Lepidogalaxias salamandroides GCA_049190665.1_fLepSal2.hap1 2,987 735,065,728 1,365 269,000 44.00
400 salamanderfish (hap2 2025) Lepidogalaxias salamandroides GCA_049190655.1_fLepSal2.hap2 1,559 742,016,821 1,366 270,100 45.23
401 sansaifugu (HTHZ2018 2019) Takifugu flavidus GCF_003711565.1_ASM371156v2 868 366,303,280 250 24,406 21.67
402 sardine (primary hap 2023 genbank) Sardina pilchardus GCA_963854185.1_fSarPil1.1 241 869,414,035 1,654 330,800 37.59
403 sardine (primary hap 2023 refseq) Sardina pilchardus GCF_963854185.1_fSarPil1.1 240 869,396,467 1,654 330,800 37.59
404 scribbled pipefish (RoL2023-P3 2023) Corythoichthys intestinalis GCF_030265065.1_ASM3026506v1 109 1,326,793,283 9 180 63.96
405 sea stickleback (SK-2024b hap1 2025) Spinachia spinachia GCA_048126635.1_SpiSpi1_v1.hap1 38 407,561,107 241 24,100 22.91
406 sea stickleback (SK-2024b hap2 2025) Spinachia spinachia GCA_048127205.1_SpiSpi1_v1.hap2 52 406,020,468 276 27,600 23.19
407 Senegalese sole Solea senegalensis GCF_019176455.1_IFAPA_SoseM_1 1,937 603,535,267 662 65,441 28.32
408 shanny (alternate hap 2023) Lipophrys pholis GCA_963383635.1_fLipPho2.1_alternate_haplotype 3,846 738,669,690 1 34 28.51
409 shanny (primary hap 2023) Lipophrys pholis GCA_963383615.1_fLipPho2.1 847 768,243,328 598 119,616 29.07
410 sharptooth jobfish (hap1 2024) Pristipomoides typus GCA_045363895.1_fPriTyp1.hap1 283 1,147,302,341 84 16,600 35.20
411 sharptooth jobfish (hap2 2024) Pristipomoides typus GCA_045363885.1_fPriTyp1.hap2 172 1,146,345,582 76 15,100 35.15
412 sheepshead minnow Cyprinodon variegatus GCF_000732505.1_C_variegatus-1.0 9,259 1,035,184,475 113,210 135,655,219 27.50
413 shortfin molly Poecilia mexicana GCF_001443325.1_P_mexicana-1.0 18,102 801,710,366 37,507 121,884,386 22.83
414 Siamese fighting fish (v1 alternate hap 2019) Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype 3,705 426,643,682 2 125 22.60
415 Siamese fighting fish (v4 primary hap 2023) Betta splendens GCF_900634795.4_fBetSpl5.4 36 427,001,245 321 31,466 23.21
416 Siamese fighting fish (v5.4 alternate hap 2023) Betta splendens GCA_900651605.2_fBetSpl5.4_alternate_haplotype 3,764 441,035,931 108 2,919 23.26
417 silver carp (IHB0807247 2022) Hypophthalmichthys molitrix GCA_022817975.1_1.0 47,685 825,236,645 65,388 37,441,584 45.25
418 silver crucian carp (wild population from Czech Republic Cgi1373 2022) Carassius gibelio GCF_023724105.1_carGib1.2-hapl.c 51 1,583,351,535 2,597 1,296,088 45.06
419 silver spinyfin (hap1 2025) Diretmus argenteus GCA_048569125.1_fDirArg3.hap1 5,504 1,517,026,147 3,365 666,800 54.21
420 silver spinyfin (hap2 2025) Diretmus argenteus GCA_048569135.1_fDirArg3.hap2 4,595 1,884,132,620 3,473 694,419 55.04
421 smalleye Pacific opah (hap1 2023) Lampris incognitus GCA_029633845.1_fLamInc1.hap1 1,059 1,477,069,270 3,120 623,912 53.60
422 smalleye Pacific opah (hap2 2023 refseq) Lampris incognitus GCF_029633865.1_fLamInc1.hap2 544 1,482,357,630 3,115 622,730 53.30
423 smallmouth bass Micropterus dolomieu GCF_021292245.1_ASM2129224v1 15,020 829,587,215 34,581 3,005,762 28.32
424 snake pipefish (RoL-2023_Sb 2023) Entelurus aequoreus GCF_033978785.1_RoL_Eaeq_v1.1 424 1,892,198,045 2,564 51,280 67.28
425 sockeye salmon (On170113-E2 v2 2019) Oncorhynchus nerka GCF_006149115.2_Oner_1.1 34,757 1,925,212,521 25,658 74,077,259 48.61
426 sockeye salmon (Pitt River 2024) Oncorhynchus nerka GCF_034236695.1_Oner_Uvic_2.0 11,378 2,645,636,310 4,351 1,747,557 57.62
427 South Georgia icefish (v2 primary hap 2022) Pseudochaenichthys georgianus GCF_902827115.2_fPseGeo1.2 1,563 1,026,222,745 2,603 1,081,697 45.78
428 southern bluefin tuna (alternate hap 2021) Thunnus maccoyii GCA_910596085.1_fThuMac1.1_alternate_haplotype 895 782,574,410 0 0 33.63
429 southern bluefin tuna (primary hap 2021 refseq) Thunnus maccoyii GCF_910596095.1_fThuMac1.1 58 782,423,979 184 31,592 26.89
430 southern platyfish Xiphophorus maculatus GCF_002775205.1_X_maculatus-5.0-male 102 704,321,165 156 3,327,905 28.29
431 Southwestern China cavefish Sinocyclocheilus anshuiensis GCF_001515605.1_SAMN03320099.WGS_v1.1 85,682 1,632,718,266 168,741 119,821,887 36.99
432 spangled emperor (hap1 2024) Lethrinus nebulosus GCA_045362495.1_fLetNeb1.hap1 226 1,133,212,262 196 38,700 29.01
433 spangled emperor (hap2 2024) Lethrinus nebulosus GCA_045362485.1_fLetNeb1.hap2 151 1,122,130,221 244 47,200 29.19
434 spiny chromis (Palm Island Apoly-LR-REF 2022) Acanthochromis polyacanthus GCF_021347895.1_KAUST_Apoly_ChrSc 81 956,771,783 871 74,752 35.47
435 spiny chromis (Palm Islands 2017) Acanthochromis polyacanthus GCF_002109545.1_ASM210954v1 30,414 991,584,656 209,115 148,830,929 22.65
436 spotted green pufferfish (2004) Tetraodon nigroviridis GCA_000180735.1_ASM18073v1 25,773 342,403,326 18,974 30,008,907 18.72
437 spotted sea bass (ZS-2023 2023) Lateolabrax maculatus GCA_031216445.1_YSFRI_Lmacu_1.1 109 632,510,465 0 0 26.28
438 spotted tilapia (v1 MD_Pm_ZW 2024) Pelmatolapia mariae GCF_036321145.1_Pm_UMD_F 792 940,981,472 23 1,150 30.76
439 spotted tilapia (v2 MD_Pm_ZW 2024) Pelmatolapia mariae GCF_036321145.2_Pm_UMD_F_2 791 972,201,687 24 1,200 30.69
440 spotted wolffish (MPS153535 2025) Anarhichas minor GCF_050575085.1_ASM5057508v1 328 643,880,946 5 5 28.94
441 sterlet (maternal hap 2022 refseq) Acipenser ruthenus GCF_902713425.1_fAciRut3.2_maternal_haplotype 1,731 1,899,810,788 433 86,300 43.22
442 sterlet (v2 paternal hap 2022) Acipenser ruthenus GCA_902713435.2_fAciRut3.2_paternal_haplotype 1,517 1,882,648,115 475 95,000 41.60
443 stone loach (alternate hap 2022) Barbatula barbatula GCA_947034905.1_fBarBar1.1_alternate_haplotype 2,237 571,749,702 0 0 38.06
444 stone loach (primary hap 2022) Barbatula barbatula GCA_947034865.1_fBarBar1.1 100 617,663,352 825 165,000 39.89
445 stone moroko (DD20220531a primary hap 2022) Pseudorasbora parva GCF_024679245.1_ASM2467924v1 81 1,228,868,788 497 102,560 63.65
446 straightnose pipefish (RoL-2023_Sa 2023) Nerophis ophidion GCF_033978795.1_RoL_Noph_v1.0 473 1,845,757,181 1,172 23,440 67.08
447 striated frogfish (MH-2024 2024) Antennarius striatus GCF_040054535.1_ASM4005453v1 42 548,561,997 18 2,715 29.69
448 striped catfish (fPanHyp1 alternate hap 2022) Pangasianodon hypophthalmus GCA_027382375.1_fPanHyp1.alt 3,274 738,869,872 1 45 37.85
449 striped catfish (primary hap 2022 refseq) Pangasianodon hypophthalmus GCF_027358585.1_fPanHyp1.pri 58 764,974,446 236 3,879,978 37.93
450 striped catfish Indonesia Pangasianodon hypophthalmus GCF_009078355.1_GENO_Phyp_1.0 150 758,973,678 463 175,919 32.50
451 striped catfish Vietnam Pangasianodon hypophthalmus GCF_003671635.1_VN_pangasius 567 715,760,110 23,755 19,239,465 30.11
452 striped sea-bass Morone saxatilis GCF_004916995.1_NCSU_SB_2.0 630 598,127,127 73,335 5,158,999 22.76
453 Sumatra barb Puntigrus tetrazona GCF_018831695.1_ASM1883169v1 1,122 730,818,536 5,075 394,129 32.49
454 swamp eel Monopterus albus GCF_001952655.1_M_albus_1.0 20,622 684,144,148 51,257 54,828,134 21.96
455 swordfish Xiphias gladius GCF_016859285.1_ASM1685928v1 1,482 691,780,295 449 224,500 23.97
456 tambaqui Colossoma macropomum GCF_904425465.1_Colossoma_macropomum 1,269 1,221,847,006 420 37,940 35.37
457 thickback sole (primary hap 2023) Microchirus variegatus GCA_963457635.1_fMicVar1.1 188 724,694,306 454 90,800 40.27
458 thicklip grey mullet (primary hap 2023) Chelon labrosus GCA_963514085.1_fCheLab1.1 363 717,420,143 610 122,000 27.59
459 threadfin butterflyfish (fChaAug3hap1 2025) Chaetodon auriga GCF_051107435.1_fChaAug3.hap1 187 663,087,921 19 3,000 24.24
460 three-spined stickleback Gasterosteus aculeatus aculeatus GCF_016920845.1_GAculeatus_UGA_version5 2,937 471,894,361 3,125 3,574,186 21.96
461 three-spined stickleback (hap1 2024) Gasterosteus aculeatus GCA_964276395.1_fGasAcu3.hap1.1 130 511,155,287 331 66,200 27.34
462 three-spined stickleback (hap2 2024) Gasterosteus aculeatus GCA_964276385.1_fGasAcu3.hap2.1 170 457,351,142 309 61,800 27.07
463 threespot wrasse (MK-OKI-2021-1 2023) Halichoeres trimaculatus GCF_033239565.1_fHalTri1.1 228 849,925,595 117 58,500 33.71
464 tidewater goby (DKJ021-1_F 2022) Eucyclogobius newberryi GCA_026437355.1_fEucNew1.0.hap2 755 913,837,424 894 89,400 47.96
465 tidewater goby (DKJ021-1_Fhap1 2022 refseq) Eucyclogobius newberryi GCF_026437365.1_fEucNew1.0.hap1 821 984,812,078 794 79,400 49.87
466 tiger tail seahorse (QL1 v2 2016) Hippocampus comes GCF_001891065.2_H_comes_QL1_v1.1 32,914 492,131,402 22,977 34,075,199 24.57
467 tongue sole Cynoglossus semilaevis GCF_000523025.1_Cse_v1.0 29,643 470,199,494 33,269 24,157,720 24.84
468 topmouth culter (CATC2023 2024) Culter alburnus GCA_040182925.1_ASM4018292v1 37 1,052,771,736 31 3,100 56.73
469 torafugu (alternate hap 2019) Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype 2,012 350,016,965 38 625,268 20.31
470 torafugu (fTakRub1.2 2019 refseq) Takifugu rubripes GCF_901000725.2_fTakRub1.2 128 384,126,662 402 3,688,529 20.93
471 torafugu (fTakRub1.3 2021 genbank) Takifugu rubripes GCA_901000725.3_fTakRub1.3 128 384,126,663 402 3,688,529 20.93
472 trahira (v1 hap1 2024 refseq) Hoplias malabaricus GCF_029633855.1_fHopMal1.hap1 598 1,186,371,479 989 65,101,941 37.57
473 trahira (v2 hap1 2024 genbank) Hoplias malabaricus GCA_029633855.2_fHopMal1.hap1 597 1,186,354,877 989 65,101,941 37.57
474 trahira (v2 hap2 2024) Hoplias malabaricus GCA_029633875.2_fHopMal1.hap2 451 1,026,599,506 792 38,873,505 38.80
475 trumpetfish (SK-2024c 2025) Aulostomus maculatus GCA_048301465.1_ASM4830146v1 160 662,945,422 179 17,900 26.05
476 trumpetfish (SK-2024c 2025) Aulostomus maculatus GCA_048301475.1_ASM4830147v1 248 669,846,493 187 18,700 26.80
477 turbot (primary hap 2023) Scophthalmus maximus GCA_963854745.1_fScoMax1.1 108 550,297,089 805 161,000 25.96
478 turbot (ysfricsl-2021 2022) Scophthalmus maximus GCF_022379125.1_ASM2237912v1 28 538,234,718 0 0 24.37
479 turquoise killifish (GRZ 2015) Nothobranchius furzeri GCF_001465895.1_Nfu_20140520 5,897 1,242,518,059 85,562 385,709,548 27.64
480 turquoise killifish (GRZ-AD 2024) Nothobranchius furzeri GCF_043380555.1_NfurGRZ-RIMD1 304 1,479,202,486 369 71,400 67.93
481 turquoise killifish (MZM-0403 2023) Nothobranchius furzeri GCF_027789165.1_UI_Nfuz_MZM_1.0 2,681 1,513,041,927 3,093 102,568,068 56.57
482 walking catfish (CIFAMagur01 2020) Clarias magur GCA_013621035.1_C_magur1.0 3,484 941,297,321 605 469,042 37.15
483 walleye pollock (NIFS_2021 2022) Gadus chalcogrammus GCF_026213295.1_NIFS_Gcha_1.0 168 629,936,721 2,816 281,600 38.86
484 warty frogfish (fAntMac1 alternate hap 2020) Antennarius maculatus GCA_013347815.1_fAntMac1.alt 2,294 530,348,589 0 0 29.49
485 warty frogfish (primary hap 2020) Antennarius maculatus GCA_013358685.1_fAntMac1.pri 155 549,949,511 219 733,384 29.79
486 western mosquitofish Gambusia affinis GCF_019740435.1_SWU_Gaff_1.0 37 680,166,006 181 17,569,858 26.88
487 western speckled dace (OS25496 2023) Rhinichthys klamathensis goyatoka GCF_029890125.1_OSU_Roscu_1.1 930 1,065,491,053 0 0 48.43
488 westslope cutthroat trout (Uvic-CL-2024 2024) Oncorhynchus clarkii lewisi GCF_045791955.1_UVic_Ocla_1.0 3,266 2,404,487,246 1,381 138,100 54.37
489 White Sands pupfish Cyprinodon tularosa GCF_016077235.1_ASM1607723v1 2,003 1,086,882,241 0 0 38.10
490 wolf-eel Anarrhichthys ocellatus GCF_004355925.1_GSC_Weel_1.0 10,315 611,444,226 23,891 43,723,504 22.11
491 woolly sculpin (alternate hap CAN_PGR_092001 2022) Clinocottus analis GCA_023055415.1_fCliAna1.0.a 171 534,899,999 222 22,200 25.81
492 woolly sculpin (CAN_PGR_092001 2022) Clinocottus analis GCA_023055335.1_fCliAna1.0.p 443 538,118,947 219 21,900 25.91
493 woolly sculpin (CAN_PGR_092001 primary hap 2022) Clinocottus analis GCF_023055335.1_fCliAna1.0.p 442 538,100,726 219 21,900 25.92
494 worm pipefish (v2.1 RoL_2023-P12025) Nerophis lumbriciformis GCF_033978685.3_RoL_Nlum_v2.1 230 1,774,801,482 40 908 69.86
495 Wuchang bream Megalobrama amblycephala GCF_018812025.1_ASM1881202v1 243 1,109,888,616 1,281 1,913,768 43.12
496 X-ray tetra P.maxillaris (Tingi 2024) Pristella maxillaris GCA_045781885.1_ASM4578188v1 157 1,109,133,250 0 0 43.95
497 Yangtze koukloug (SWU-2019 2020) Onychostoma macrolepis GCF_012432095.1_ASM1243209v1 353 886,586,436 617 3,343,332 50.19
498 yellow and blueback fusilier (OG672 2025) Caesio teres GCA_048129025.1_fCaeTer1.1_haplotype_2 250 1,033,416,279 17 3,400 31.40
499 yellow and blueback fusilier (OG672 2025) Caesio teres GCA_048129055.1_fCaeTer1.1_haplotype_1 323 1,078,118,487 29 5,800 33.44
500 yellow catfish (hzauxx_2018 2022) Tachysurus fulvidraco GCF_022655615.1_HZAU_PFXX_2.0 517 712,016,913 817 399,063 35.54
501 yellow catfish (Tf-2017 2018) Tachysurus fulvidraco GCF_003724035.1_ASM372403v1 663 713,810,725 1,760 6,333,458 35.55
502 yellow perch (YP-PL-M2 2019) Perca flavescens GCF_004354835.1_PFLA_1.0 268 877,456,336 831 414,502 35.96
503 yellowfin seabream (v.2019 alternate hap 2020) Acanthopagrus latus GCA_904848175.1_fAcaLat1.1_alternate_haplotype 349 47,986,553 80 8,000 20.44
504 yellowfin seabream (v.2019 primary hap 2020) Acanthopagrus latus GCF_904848185.1_fAcaLat1.1 66 685,144,197 149 14,900 22.83
505 yellowfin tuna (alternate hap 2021) Thunnus albacares GCA_914744365.1_fThuAlb1.1_alternate_haplotype 640 786,643,039 0 0 28.56
506 yellowfin tuna (primary hap 2021) Thunnus albacares GCF_914725855.1_fThuAlb1.1 68 792,101,331 70 23,300 27.09
507 yellowtail amberjack (v2 SW California HSWRI2012SDOR001 2017) Seriola lalandi dorsalis GCF_002814215.2_Sedor1 98,345 731,697,021 33,661 16,134,034 25.04
508 zebra mbuna (Mazinzi reef 2018) Maylandia zebra GCF_000238955.4_M_zebra_UMD2a 1,690 957,485,262 641 64,100 31.59
509 zebra mbuna (NMK-2024a 2024) Maylandia zebra GCF_041146795.1_Mzebra_GT3a 63 962,175,383 155 11,255,775 39.41
510 zebrafish (fDanRer4 alternate hap 2022) Danio rerio GCA_944039255.1_fDanRer4.1_alternate_haplotype 4,719 458,104,506 0 0 59.54
511 zebrafish (GRCz12tu Tuebingen 2025) Danio rerio GCF_049306965.1_GRCz12tu 26 1,448,808,562 13,351 13,810 60.69
512 zebrafish (T5D 2021) Danio rerio GCA_018400075.1_ASM1840007v1 25 1,338,639,271 20,876 1,845,030 61.21
513 zebrafish (WGS:CAHPTA01 2020) Danio rerio GCA_903684865.1_fDreABH1.1 1,252 1,354,075,779 712 197,709 61.16
514 zebrafish (WGS:CAHPTB02 2020) Danio rerio GCA_903684855.2_fDreTuH1.2 755 1,360,506,095 1,352 82,877 60.94
515 zebrafish (WGS:CALUEM01 primary hap 2022) Danio rerio GCA_944039275.1_fDanRer4.1 73 1,413,675,870 381 122,395 51.91
516 zebrafish GRCz11 Danio rerio GCF_000002035.6_GRCz11 1,923 1,679,203,469 20,258 4,693,618 57.84
517 zig-zag eel (alternate hap) Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype 1,437 43,703,874 0 0 18.09
518 zig-zag eel (v1.2 2019 refseq) Mastacembelus armatus GCF_900324485.2_fMasArm1.2 123 591,951,587 238 13,231,344 23.47
519 zig-zag eel (v1.3 2021 genbank) Mastacembelus armatus GCA_900324485.3_fMasArm1.3 123 591,951,591 238 13,231,344 23.47
TOTALS:total assembly count 519 2,729,794 496,459,089,351 8,121,620 5,711,378,344  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 602 assemblies assembly stats track stats
Mammals 715 assemblies assembly stats track stats
Birds 453 assemblies assembly stats track stats
Fishes 519 assemblies assembly stats track stats
other vertebrates 343 assemblies assembly stats track stats
Invertebrates 1541 assemblies assembly stats track stats
Plants 435 assemblies assembly stats track stats
Fungi 3995 assemblies assembly stats track stats
Viruses 14996 assemblies assembly stats track stats
Archaea 2663 assemblies assembly stats track stats
Bacteria 21837 assemblies assembly stats track stats
legacy/superseded 687 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 1303 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 464 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 5058 assemblies assembly stats track stats