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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_005322 | AC012494 | 81794136 | 3 | chr2 | NT_005322 | AC073485 | 81985258 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC073485 | 81985258 | 3 | chr2 | NT_005322 | AC064872 | 82124069 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC073485 | 81985258 | 3 | chr2 | NT_032985 | AC019332 | 70561444 | 1 | 36249 | 4670 | 57370 | 98289 |
| S/G/Y/R/B/O |
NT_005322 | AC064872 | 82124069 | 3 | chr2 | NT_005322 | AC092660 | 82242170 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC064872 | 82124069 | 3 | chr2 | NT_032985 | AC019332 | 70561444 | 1 | 68943 | 0 | 7315 | 76258 |
| S/G/Y/R/B/O |
NT_005322 | AC092660 | 82242170 | 3 | chr2 | NT_005322 | AC018887 | 82394874 | 3 | 0 | 0 | 2000 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC092660 | 82242170 | 3 |   |   | AC068534 | 82124069 | 1 | 39541 | 2100 | 49949 | 91590 |
| S/G/Y/R/B/O |
NT_005322 | AC018887 | 82394874 | 3 | chr2 | NT_005322 | AC069162 | 82582340 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC069162 | 82582340 | 3 | chr2 | NT_005322 | AC092604 | 82625146 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC092604 | 82625146 | 3 | chr2 | NT_005322 | AC017004 | 82674556 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_005322 | AC017004 | 82674556 | 3 | chr2 | NT_005322 | AC069387 | 82857406 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC017004 | 82674556 | 3 | chr2 | NT_032982 | AC011993 | 70809173 | 1 | 100259 | 2216 | 0 | 102475 |
| S/G/Y/R/B/O |
NT_005322 | AC069387 | 82857406 | 3 | chr2 | NT_005322 | AC011754 | 82904546 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC069387 | 82857406 | 3 | chr2 | NT_032982 | AC011993 | 70809173 | 1 | 30834 | 6799 | 4766 | 42399 |
| S/G/Y/R/B/O |
NT_005322 | AC011754 | 82904546 | 3 | chr2 | NT_005322 | AC018733 | 83046050 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_005322 | AC011754 | 82904546 | 3 | chr2 | NT_032982 | AC011993 | 70809173 | 1 | 30027 | 0 | 0 | 30027 |
| S/G/Y/R/B/O |
NT_005322 | AC018733 | 83046050 | 3 | chr2 | NT_005322 | AC010975 | 83208967 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_005322 | AC010975 | 83208967 | 3 | chr2 | NT_005322 | AC096573 | 83380016 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC096573 | 83380016 | 3 | chr2 | NT_005322 | AC096753 | 83475003 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC096753 | 83475003 | 3 | chr2 | NT_005322 | AC093322 | 83575623 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_005322 | AC093322 | 83575623 | 3 | chr2 | NT_005322 | AC011746 | 83577617 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC011746 | 83577617 | 3 | chr2 | NT_005322 | AC016716 | 83736661 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC011746 | 83577617 | 3 |   |   | AC023348 | 83475003 | 1 | 36523 | 0 | 0 | 36523 |
| S/G/Y/R/B/O |
NT_005322 | AC016716 | 83736661 | 3 | chr2 | NT_005322 | AC016670 | 83950730 | 3 | 0 | 2000 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC016716 | 83736661 | 3 |   |   | AC016030 | 83575623 | 1 | 37959 | 2880 | 0 | 40839 |
| S/G/Y/R/B/O |
NT_005322 | AC016716 | 83736661 | 3 |   |   | AC023348 | 83950730 | 1 | 120835 | 11336 | 13594 | 145765 |
| S/G/Y/R/B/O |
NT_005322 | AC016670 | 83950730 | 3 | chr2 | NT_005322 | AC104780 | 84097145 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC016670 | 83950730 | 3 |   |   | AC016030 | 83950730 | 1 | 109632 | 2664 | 20522 | 132818 |
| S/G/Y/R/B/O |
NT_005322 | AC016670 | 83950730 | 3 |   |   | AC016239 | 83950730 | 1 | 44171 | 0 | 0 | 44171 |
| S/G/Y/R/B/O |
NT_005322 | AC016670 | 83950730 | 3 |   |   | AC018534 | 83736661 | 1 | 66563 | 1800 | 59388 | 127751 |
| S/G/Y/R/B/O |
NT_005322 | AC104780 | 84097145 | 3 | chr2 | NT_005322 | AC011741 | 84171646 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC104780 | 84097145 | 3 |   |   | AC016239 | 84171646 | 1 | 75621 | 0 | 0 | 75621 |
| S/G/Y/R/B/O |
NT_005322 | AC104780 | 84097145 | 3 |   |   | AC018534 | 84171646 | 1 | 15749 | 0 | 0 | 15749 |
| S/G/Y/R/B/O |
NT_005322 | AC011741 | 84171646 | 3 | chr2 | NT_005322 | AC008067 | 84311064 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_005322 | AC011741 | 84171646 | 3 |   |   | AC016239 | 84311064 | 1 | 31774 | 1158 | 0 | 32932 |
| S/G/Y/R/B/O |
NT_005322 | AC008067 | 84311064 | 3 | chr2 | NT_005322 | AC012355 | 84462106 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_005322 | AC012355 | 84462106 | 3 | chr2 | NT_005322 | AC107215 | 84582018 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC012355 | 84462106 | 3 |   |   | AC024977 | 84311064 | 1 | 77410 | 6799 | 0 | 84209 |
| S/G/Y/R/B/O |
NT_005322 | AC107215 | 84582018 | 3 | chr2 | NT_005322 | AC084193 | 84598072 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC107215 | 84582018 | 3 |   |   | AC024977 | 84462106 | 1 | 17593 | 0 | 0 | 17593 |
| S/G/Y/R/B/O |
NT_005322 | AC084193 | 84598072 | 3 | chr2 | NT_005322 | AC084297 | 84781743 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC084193 | 84598072 | 3 |   |   | AC023367 | 84598072 | 1 | 74117 | 9886 | 7343 | 91346 |
| S/G/Y/R/B/O |
NT_005322 | AC084193 | 84598072 | 3 |   |   | AC024977 | 84598072 | 1 | 74872 | 0 | 4159 | 79031 |
| S/G/Y/R/B/O |
NT_005322 | AC084297 | 84781743 | 3 | chr2 | NT_005322 | AC105342 | 84892035 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC084297 | 84781743 | 3 |   |   | AC021009 | 84582018 | 1 | 71740 | 1683 | 0 | 73423 |
| S/G/Y/R/B/O |
NT_005322 | AC084297 | 84781743 | 3 |   |   | AC023367 | 84582018 | 1 | 67964 | 7968 | 1381 | 77313 |
| S/G/Y/R/B/O |
NT_005322 | AC105342 | 84892035 | 3 | chr2 | NT_005322 | AC079997 | 84974184 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC105342 | 84892035 | 3 |   |   | AC021009 | 84582018 | 1 | 81390 | 0 | 0 | 81390 |
| S/G/Y/R/B/O |
NT_005322 | AC079997 | 84974184 | 3 | chr2 | NT_005322 | AC012075 | 85090761 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC012075 | 85090761 | 3 | chr2 | NT_005322 | AC013262 | 85274198 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC013262 | 85274198 | 3 | chr2 | NT_005322 | AC079246 | 85418757 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC079246 | 85418757 | 3 | chr2 | NT_005322 | AC105419 | 85516697 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC079246 | 85418757 | 3 | chr2 | NT_005322 | AC013786 | 86855906 | 1 | 28272 | 0 | 1341 | 29613 |
| S/G/Y/R/B/O |
NT_005322 | AC079246 | 85418757 | 3 |   |   | AC011226 | 85418757 | 2 | 76760 | 0 | 0 | 76760 |
| S/G/Y/R/B/O |
NT_005322 | AC105419 | 85516697 | 3 | chr2 | NT_005322 | AC069151 | 85628250 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC105419 | 85516697 | 3 | chr2 | NT_005322 | AC013786 | 86855906 | 1 | 73616 | 4563 | 0 | 78179 |
| S/G/Y/R/B/O |
NT_005322 | AC105419 | 85516697 | 3 |   |   | AC011226 | 86855906 | 2 | 111557 | 0 | 0 | 111557 |
| S/G/Y/R/B/O |
NT_005322 | AC069151 | 85628250 | 3 | chr2 | NT_005322 | AC079896 | 85663944 | 3 | 0 | 1984 | 0 | 1984 |
| S/G/Y/R/B/O |
NT_005322 | AC069151 | 85628250 | 3 | chr2 | NT_005322 | AC013786 | 86855906 | 1 | 33827 | 0 | 231 | 34058 |
| S/G/Y/R/B/O |
NT_005322 | AC079896 | 85663944 | 3 | chr2 | NT_005322 | AC010985 | 85798733 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_005322 | AC079896 | 85663944 | 3 | chr2 | NT_005322 | AC069093 | 86871046 | 1 | 86403 | 9328 | 0 | 95731 |
| S/G/Y/R/B/O |
NT_005322 | AC010985 | 85798733 | 3 | chr2 | NT_005322 | AC114767 | 85992853 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC010985 | 85798733 | 3 | chr2 | NT_005322 | AC069093 | 86871046 | 1 | 76941 | 4035 | 0 | 80976 |
| S/G/Y/R/B/O |
NT_005322 | AC114767 | 85992853 | 1 | chr2 | NT_005322 | AC105761 | 85993998 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC114767 | 85992853 | 1 | chr2 | NT_005322 | AC104799 | 86293666 | 3 | 122330 | 0 | 0 | 122330 |
| S/G/Y/R/B/O |
NT_005322 | AC114767 | 85992853 | 1 | chr2 | NT_005322 | AC109638 | 86187936 | 3 | 70686 | 0 | 0 | 70686 |
| S/G/Y/R/B/O |
NT_005322 | AC114767 | 85992853 | 1 |   |   | AC026893 | 85993998 | 1 | 116400 | 0 | 0 | 116400 |
| S/G/Y/R/B/O |
NT_005322 | AC114767 | 85992853 | 1 |   |   | AC034300 | 85993998 | 1 | 64938 | 5588 | 1403 | 71929 |
| S/G/Y/R/B/O |
NT_005322 | AC105761 | 85993998 | 1 | chr2 | NT_005322 | AC010105 | 85994616 | 3 | 3892 | 28355 | 15796 | 48043 |
| S/G/Y/R/B/O |
NT_005322 | AC010105 | 85994616 | 3 | chr2 | NT_005322 | AC109638 | 86187936 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC109638 | 86187936 | 3 | chr2 | NT_005322 | AC104799 | 86293666 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC109638 | 86187936 | 3 | chr2 | NT_005322 | AC114767 | 85992853 | 1 | 70686 | 0 | 0 | 70686 |
| S/G/Y/R/B/O |
NT_005322 | AC104799 | 86293666 | 3 | chr2 | NT_005322 | AC098817 | 86453599 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC104799 | 86293666 | 3 | chr2 | NT_005322 | AC114767 | 85992853 | 1 | 122330 | 0 | 0 | 122330 |
| S/G/Y/R/B/O |
NT_005322 | AC104799 | 86293666 | 3 |   |   | AC026893 | 137740924 | 1 | 157161 | 0 | 0 | 157161 |
| S/G/Y/R/B/O |
NT_005322 | AC104799 | 86293666 | 3 |   |   | AC034300 | 137740924 | 1 | 86121 | 8307 | 1403 | 95831 |
| S/G/Y/R/B/O |
NT_005322 | AC098817 | 86453599 | 3 | chr2 | NT_005322 | AC105349 | 86606035 | 3 | 0 | 0 | 1991 | 1991 |
| S/G/Y/R/B/O |
NT_005322 | AC098817 | 86453599 | 3 | chr2 | NT_005322 | AC007670 | 86863633 | 1 | 139481 | 7307 | 1089 | 147877 |
| S/G/Y/R/B/O |
NT_005322 | AC098817 | 86453599 | 3 |   |   | AC034300 | 86863633 | 1 | 52840 | 7187 | 0 | 60027 |
| S/G/Y/R/B/O |
NT_005322 | AC098817 | 86453599 | 3 |   |   | AC092456 | 86863633 | 1 | 47068 | 10483 | 70492 | 128043 |
| S/G/Y/R/B/O |
NT_005322 | AC105349 | 86606035 | 3 | chr2 | NT_005322 | AC013719 | 86613287 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_005322 | AC013719 | 86613287 | 3 | chr2 | NT_005322 | AC010903 | 86764283 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_005322 | AC010903 | 86764283 | 3 | chr2 | NT_005322 | AC013786 | 86855906 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC013786 | 86855906 | 1 | chr2 | NT_005322 | AC007670 | 86863633 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC013786 | 86855906 | 1 | chr2 | NT_005322 | AC069151 | 85628250 | 3 | 33827 | 0 | 231 | 34058 |
| S/G/Y/R/B/O |
NT_005322 | AC013786 | 86855906 | 1 | chr2 | NT_005322 | AC079246 | 85418757 | 3 | 28272 | 0 | 1341 | 29613 |
| S/G/Y/R/B/O |
NT_005322 | AC013786 | 86855906 | 1 | chr2 | NT_005322 | AC105419 | 85516697 | 3 | 73616 | 4563 | 0 | 78179 |
| S/G/Y/R/B/O |
NT_005322 | AC013786 | 86855906 | 1 |   |   | AC011226 | 86613287 | 2 | 120826 | 4563 | 1341 | 126730 |
| S/G/Y/R/B/O |
NT_005322 | AC007670 | 86863633 | 1 | chr2 | NT_005322 | AC069093 | 86871046 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_005322 | AC007670 | 86863633 | 1 | chr2 | NT_005322 | AC098817 | 86453599 | 3 | 139481 | 7307 | 1089 | 147877 |
| S/G/Y/R/B/O |
NT_005322 | AC007670 | 86863633 | 1 |   |   | AC034300 | 85516697 | 1 | 41353 | 7177 | 0 | 48530 |
| S/G/Y/R/B/O |
NT_005322 | AC007670 | 86863633 | 1 |   |   | AC092456 | 85516697 | 1 | 68930 | 10530 | 46174 | 125634 |
| S/G/Y/R/B/O |
NT_005322 | AC069093 | 86871046 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_005322 | AC069093 | 86871046 | 1 | chr2 | NT_005322 | AC010985 | 85798733 | 3 | 76941 | 4035 | 0 | 80976 |
| S/G/Y/R/B/O |
NT_005322 | AC069093 | 86871046 | 1 | chr2 | NT_005322 | AC079896 | 85663944 | 3 | 86403 | 9328 | 0 | 95731 |
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