Chromosome 2 - Clone Overlaps

Chromosome 2 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_019306

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_019306	AC062027	113122075	1	chr2	NT_019306	AC017002	113148357	3	61966	0	0	61966
S/G/Y/R/B/O	NT_019306	AC062027	113122075	1	chr2	NT_019306	AC093166	113358226	3	77888	0	0	77888
S/G/Y/R/B/O	NT_019306	AC062027	113122075	1			AC069171	113148357	1	41686	5049	1426	48161
S/G/Y/R/B/O	NT_019306	AC017002	113148357	3	chr2	NT_019306	AC093166	113358226	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC093166	113358226	3	chr2	NT_019306	AC104651	113572091	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC093166	113358226	3	chr2	NT_019306	AC062027	113122075	1	77888	0	0	77888
S/G/Y/R/B/O	NT_019306	AC093166	113358226	3			AC069171	91077094	1	109940	7427	7382	124749
S/G/Y/R/B/O	NT_019306	AC104651	113572091	3	chr2	NT_019306	AC093675	113687045	1	5166	0	0	5166
S/G/Y/R/B/O	NT_019306	AC093675	113687045	1	chr2	NT_019306	AC112246	113763308	1	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC093675	113687045	1	chr2	NT_019306	AC092645	113925738	3	79915	0	0	79915
S/G/Y/R/B/O	NT_019306	AC093675	113687045	1	chr2	NT_019306	AC115115	113792846	1	34575	0	0	34575
S/G/Y/R/B/O	NT_019306	AC112246	113763308	1	chr2	NT_019306	AC115115	113792846	1	84749	5910	13612	104271
S/G/Y/R/B/O	NT_019306	AC112246	113763308	1	chr2	NT_019306	AC012442	114142541	3	21805	0	0	21805
S/G/Y/R/B/O	NT_019306	AC112246	113763308	1			AC109815	91077094	1	27810	0	7767	35577
S/G/Y/R/B/O	NT_019306	AC112246	113763308	1			AC114781	79745146	1	129684	0	34108	163792
S/G/Y/R/B/O	NT_019306	AC115115	113792846	1	chr2	NT_019306	AC092645	113925738	3	69911	471	24192	94574
S/G/Y/R/B/O	NT_019306	AC115115	113792846	1	chr2	NT_031762	AC013271	111753808	3	12762	0	3414	16176
S/G/Y/R/B/O	NT_019306	AC115115	113792846	1	chr2	NT_019306	AC093675	113687045	1	34575	0	0	34575
S/G/Y/R/B/O	NT_019306	AC115115	113792846	1			AC108938	113687045	1	12765	0	3414	16179
S/G/Y/R/B/O	NT_019306	AC115115	113792846	1			AC114781	79745146	1	45518	0	3428	48946
S/G/Y/R/B/O	NT_019306	AC092645	113925738	3	chr2	NT_019306	AC112235	114126290	1	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC092645	113925738	3	chr2	NT_019306	AC093675	113687045	1	79915	0	0	79915
S/G/Y/R/B/O	NT_019306	AC112235	114126290	1	chr2	NT_019306	AC067802	114128414	1	97974	14690	17798	130462
S/G/Y/R/B/O	NT_019306	AC112235	114126290	1	chr2	NT_019306	AC079753	114480550	3	69435	0	0	69435
S/G/Y/R/B/O	NT_019306	AC112235	114126290	1	chr2	NT_019306	AC079922	114315581	3	123961	0	0	123961
S/G/Y/R/B/O	NT_019306	AC112235	114126290	1			AC080187	114315581	1	76333	0	34227	110560
S/G/Y/R/B/O	NT_019306	AC112235	114126290	1			X03833	145275220	3	11935	0	0	11935
S/G/Y/R/B/O	NT_019306	AC067802	114128414	1	chr2	NT_019306	AC062014	114130932	1	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC067802	114128414	1	chr2	NT_019306	AC079922	114315581	3	67209	11879	6851	85939
S/G/Y/R/B/O	NT_019306	AC067802	114128414	1			AC080187	114315581	1	30792	6446	6823	44061
S/G/Y/R/B/O	NT_019306	AC062014	114130932	1	chr2	NT_019306	AC012442	114142541	3	94633	16343	3865	114841
S/G/Y/R/B/O	NT_019306	AC062014	114130932	1	chr2	NT_031762	AC013271	111753808	3	12438	2403	2643	17484
S/G/Y/R/B/O	NT_019306	AC062014	114130932	1			AC080187	114315581	1	17359	0	7797	25156
S/G/Y/R/B/O	NT_019306	AC062014	114130932	1			AC109815	91143937	1	12444	5082	0	17526
S/G/Y/R/B/O	NT_019306	AC062014	114130932	1			AC114781	113763308	1	20775	4790	2957	28522
S/G/Y/R/B/O	NT_019306	AC012442	114142541	3	chr2	NT_019306	AC079922	114315581	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC012442	114142541	3	chr2	NT_019306	AC112246	113763308	1	21805	0	0	21805
S/G/Y/R/B/O	NT_019306	AC012442	114142541	3			AC080187	114130932	1	30981	0	19324	50305
S/G/Y/R/B/O	NT_019306	AC079922	114315581	3	chr2	NT_019306	AC079753	114480550	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC079922	114315581	3	chr2	NT_019306	AC067802	114128414	1	67209	11879	6851	85939
S/G/Y/R/B/O	NT_019306	AC079922	114315581	3	chr2	NT_019306	AC112235	114126290	1	123961	0	0	123961
S/G/Y/R/B/O	NT_019306	AC079922	114315581	3			AC080187	114128414	1	99045	0	26229	125274
S/G/Y/R/B/O	NT_019306	AC079753	114480550	3	chr2	NT_019306	AC084280	114634764	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019306	AC079753	114480550	3	chr2	NT_019306	AC112235	114126290	1	69435	0	0	69435
S/G/Y/R/B/O	NT_019306	AC084280	114634764	3	chr2	NT_019306	AC016724	114648730	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019306	AC016724	114648730	3	chr2	NT_019306	AC024704	114844038	3	54098	0	0	54098
S/G/Y/R/B/O	NT_019306	AC016724	114648730	3			U65590	114634764	3	33211	0	0	33211
S/G/Y/R/B/O	NT_019306	AC016724	114648730	3			X64532	114634764	3	12526	0	0	12526
S/G/Y/R/B/O	NT_019306	AC024704	114844038	3	chr2	NT_019306	AC016683	114860219	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019306	AC024704	114844038	3			U65590	114648730	3	33240	0	0	33240
S/G/Y/R/B/O	NT_019306	AC024704	114844038	3			X64532	114648730	3	12524	0	0	12524
S/G/Y/R/B/O	NT_019306	AC016683	114860219	3	chr2	NT_019306	AC016745	115038156	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019306	AC016745	115038156	3	chr2	NT_019306	AL078621	115189842	3	3672	0	0	3672
S/G/Y/R/B/O	NT_019306	AC016745	115038156	3	chr10	NT_030772	AL135795	48133932	1	18329	2248	22234	42811
S/G/Y/R/B/O	NT_019306	AL078621	115189842	3	chr2	NT_019306	AC017074	115366576	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AL078621	115189842	3	chr10	NT_030772	AL135795	48133932	1	74846	2475	18231	95552
S/G/Y/R/B/O	NT_019306	AL078621	115189842	3			AC016767	115038156	1	148302	0	0	148302
S/G/Y/R/B/O	NT_019306	AC017074	115366576	3	chr2	NT_019306	AC104653	115507008	1	63223	0	0	63223
S/G/Y/R/B/O	NT_019306	AC104653	115507008	1	chr2	NT_019306	AC110769	115617690	3	73325	0	0	73325
S/G/Y/R/B/O	NT_019306	AC104653	115507008	1			AC027120	172426702	1	31192	2243	38682	72117
S/G/Y/R/B/O	NT_019306	AC104653	115507008	1			AC069268	172426702	1	32914	6756	6786	46456
S/G/Y/R/B/O	NT_019306	AC104653	115507008	1			AC069399	172426702	1	32914	10123	12154	55191
S/G/Y/R/B/O	NT_019306	AC110769	115617690	3	chr2	NT_019306	AC010982	115692290	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC110769	115617690	3			AC023877	115617690	1	72312	0	0	72312
S/G/Y/R/B/O	NT_019306	AC110769	115617690	3			AC026208	115617690	1	36522	6864	3406	46792
S/G/Y/R/B/O	NT_019306	AC110769	115617690	3			AC027120	115617690	1	73273	4516	38682	116471
S/G/Y/R/B/O	NT_019306	AC110769	115617690	3			AC069268	115617690	1	21974	6856	10338	39168
S/G/Y/R/B/O	NT_019306	AC110769	115617690	3			AC069399	115617690	1	21974	10572	19324	51870
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3	chr2	NT_019306	AC105050	115909397	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3	chr2	NT_019306	AC023486	116011514	1	127136	0	6711	133847
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC023877	116011514	1	80364	0	0	80364
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC026158	116011514	1	58339	8250	13256	79845
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC026159	116011514	1	77587	11889	30853	120329
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC026208	116011514	1	65039	4796	30575	100410
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC026389	116011514	1	23404	2530	5842	31776
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC027120	116011514	1	28267	0	0	28267
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC027401	116011514	1	86624	8183	2420	97227
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AC055768	116011514	1	87292	9665	17429	114386
S/G/Y/R/B/O	NT_019306	AC010982	115692290	3			AL669843	64139369	2	114998	0	0	114998
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3	chr2	NT_019306	AC023486	116011514	1	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3	chr2	NT_019306	AC026684	116025981	1	41498	4650	3028	49176
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3	chr2	NT_019306	AC046156	116018244	1	41154	2407	21297	64858
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3			AC026158	116221352	1	19274	0	4992	24266
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3			AC026389	116221352	1	20697	0	28943	49640
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3			AC027401	116025981	1	26147	0	0	26147
S/G/Y/R/B/O	NT_019306	AC105050	115909397	3			AL669843	116975824	2	70262	0	0	70262
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1	chr2	NT_019306	AC046156	116018244	1	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1	chr2	NT_019306	AC010982	115692290	3	127136	0	6711	133847
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AC023877	116221352	1	45922	0	1249	47171
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AC026158	116221352	1	15963	2885	7889	26737
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AC026159	116221352	1	19402	8931	10568	38901
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AC026208	116221352	1	36688	4417	20264	61369
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AC027120	116221352	1	12737	0	1256	13993
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AC055768	116221352	1	48231	0	4052	52283
S/G/Y/R/B/O	NT_019306	AC023486	116011514	1			AL669843	116221352	2	47539	0	9351	56890
S/G/Y/R/B/O	NT_019306	AC046156	116018244	1	chr2	NT_019306	AC026684	116025981	1	22106	0	11889	33995
S/G/Y/R/B/O	NT_019306	AC046156	116018244	1	chr2	NT_019306	AC105050	115909397	3	41154	2407	21297	64858
S/G/Y/R/B/O	NT_019306	AC046156	116018244	1	chr2	NT_019306	AC107387	116877073	3	15893	4874	6668	27435
S/G/Y/R/B/O	NT_019306	AC046156	116018244	1			AC026158	116221352	1	16358	0	6201	22559
S/G/Y/R/B/O	NT_019306	AC046156	116018244	1			AL669843	116877073	2	30504	2410	26814	59728
S/G/Y/R/B/O	NT_019306	AC026684	116025981	1	chr2	NT_019306	AC016147	116036167	1	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC026684	116025981	1	chr2	NT_019306	AC105050	115909397	3	41498	4650	3028	49176
S/G/Y/R/B/O	NT_019306	AC026684	116025981	1	chr2	NT_019306	AC107387	116877073	3	27403	0	12776	40179
S/G/Y/R/B/O	NT_019306	AC026684	116025981	1			AL669843	116877073	2	23073	4647	3324	31044
S/G/Y/R/B/O	NT_019306	AC016147	116036167	1	chr2	NT_019306	AC092107	116037324	1	39541	7282	13557	60380
S/G/Y/R/B/O	NT_019306	AC016147	116036167	1	chr2	NT_019306	AC016151	116221352	1	55621	12343	5640	73604
S/G/Y/R/B/O	NT_019306	AC016147	116036167	1	chr2	NT_019306	AC018688	116051048	3	30965	0	0	30965
S/G/Y/R/B/O	NT_019306	AC092107	116037324	1	chr2	NT_019306	AC018688	116051048	3	22429	0	0	22429
S/G/Y/R/B/O	NT_019306	AC092107	116037324	1	chr2	NT_019306	AC016151	116221352	1	41038	6227	7957	55222
S/G/Y/R/B/O	NT_019306	AC018688	116051048	3	chr2	NT_019306	AC016151	116221352	1	2578	0	0	2578
S/G/Y/R/B/O	NT_019306	AC018688	116051048	3	chr2	NT_019306	AC016147	116036167	1	30965	0	0	30965
S/G/Y/R/B/O	NT_019306	AC016151	116221352	1	chr2	NT_019306	AC068542	116345047	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC016151	116221352	1	chr2	NT_019306	AC016147	116036167	1	55621	12343	5640	73604
S/G/Y/R/B/O	NT_019306	AC016151	116221352	1	chr2	NT_019306	AC092107	116037324	1	41038	6227	7957	55222
S/G/Y/R/B/O	NT_019306	AC068542	116345047	3	chr2	NT_019306	AC012071	116504623	3	0	0	200	200
S/G/Y/R/B/O	NT_019306	AC012071	116504623	3	chr2	NT_019306	AC010885	116699688	3	0	0	200	200
S/G/Y/R/B/O	NT_019306	AC010885	116699688	3	chr2	NT_019306	AC107387	116877073	3	0	0	0	0
S/G/Y/R/B/O	NT_019306	AC010885	116699688	3	chr2	NT_019306	AC104074	116975824	1	31942	10007	6058	48007
S/G/Y/R/B/O	NT_019306	AC010885	116699688	3	chr2	NT_019306	AC104075	116990357	1	105157	14028	22329	141514
S/G/Y/R/B/O	NT_019306	AC107387	116877073	3	chr2	NT_019306	AC104074	116975824	1	36648	10331	16431	63410
S/G/Y/R/B/O	NT_019306	AC107387	116877073	3	chr2	NT_019306	AC026684	116025981	1	27403	0	12776	40179
S/G/Y/R/B/O	NT_019306	AC107387	116877073	3	chr2	NT_019306	AC046156	116018244	1	15893	4874	6668	27435
S/G/Y/R/B/O	NT_019306	AC104074	116975824	1	chr2	NT_019306	AC104075	116990357	1	12937	5138	6114	24189
S/G/Y/R/B/O	NT_019306	AC104074	116975824	1	chr2	NT_019306	AC010885	116699688	3	31942	10007	6058	48007
S/G/Y/R/B/O	NT_019306	AC104075	116990357	1
S/G/Y/R/B/O	NT_019306	AC104075	116990357	1	chr2	NT_019306	AC010885	116699688	3	105157	14028	22329	141514