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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_029235 | AC080095 | 90774649 | 1 | chr2 | NT_029235 | AC083899 | 90795391 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029235 | AC080095 | 90774649 | 1 | chr2 | NT_029235 | AC108479 | 91321521 | 1 | 31397 | 0 | 0 | 31397 |
| S/G/Y/R/B/O |
NT_029235 | AC080095 | 90774649 | 1 | chr2 | NT_029235 | AC109354 | 91143937 | 1 | 53132 | 0 | 31449 | 84581 |
| S/G/Y/R/B/O |
NT_029235 | AC080095 | 90774649 | 1 | chrX | NT_011574 | AL049588 | 139569580 | 3 | 30547 | 4241 | 5104 | 39892 |
| S/G/Y/R/B/O |
NT_029235 | AC080095 | 90774649 | 1 | chrX | NT_011574 | AL138969 | 139422983 | 3 | 91248 | 0 | 33272 | 124520 |
| S/G/Y/R/B/O |
NT_029235 | AC083899 | 90795391 | 3 | chr2 | NT_029235 | AC092651 | 90947057 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029235 | AC083899 | 90795391 | 3 | chr2 | NT_032992 | AC068279 | 90586636 | 1 | 17964 | 0 | 0 | 17964 |
| S/G/Y/R/B/O |
NT_029235 | AC083899 | 90795391 | 3 |   |   | AC069171 | 90586636 | 1 | 57863 | 0 | 19174 | 77037 |
| S/G/Y/R/B/O |
NT_029235 | AC092651 | 90947057 | 3 | chr2 | NT_029235 | AC093616 | 91043310 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029235 | AC092651 | 90947057 | 3 | chr2 | NT_029235 | AC064810 | 91077094 | 1 | 16586 | 1519 | 0 | 18105 |
| S/G/Y/R/B/O |
NT_029235 | AC093616 | 91043310 | 1 | chr2 | NT_029235 | AC064810 | 91077094 | 1 | 137650 | 3884 | 2943 | 144477 |
| S/G/Y/R/B/O |
NT_029235 | AC093616 | 91043310 | 1 | chr2 | NT_032990 | AC068491 | 112897524 | 3 | 34556 | 0 | 0 | 34556 |
| S/G/Y/R/B/O |
NT_029235 | AC093616 | 91043310 | 1 | chr2 | NT_029235 | AC109354 | 91143937 | 1 | 87757 | 0 | 3388 | 91145 |
| S/G/Y/R/B/O |
NT_029235 | AC093616 | 91043310 | 1 |   |   | AC111200 | 91143937 | 1 | 50055 | 0 | 2739 | 52794 |
| S/G/Y/R/B/O |
NT_029235 | AC064810 | 91077094 | 1 | chr2 | NT_029235 | AC109354 | 91143937 | 1 | 29388 | 1737 | 10174 | 41299 |
| S/G/Y/R/B/O |
NT_029235 | AC064810 | 91077094 | 1 | chr2 | NT_032990 | AC068491 | 112897524 | 3 | 34015 | 0 | 0 | 34015 |
| S/G/Y/R/B/O |
NT_029235 | AC064810 | 91077094 | 1 | chr2 | NT_029235 | AC092651 | 90947057 | 3 | 16586 | 1519 | 0 | 18105 |
| S/G/Y/R/B/O |
NT_029235 | AC064810 | 91077094 | 1 |   |   | AC111200 | 91143937 | 1 | 41643 | 0 | 2739 | 44382 |
| S/G/Y/R/B/O |
NT_029235 | AC109354 | 91143937 | 1 | chr2 | NT_029235 | AC108479 | 91321521 | 1 | 87268 | 0 | 0 | 87268 |
| S/G/Y/R/B/O |
NT_029235 | AC109354 | 91143937 | 1 | chr2 | NT_029235 | AC080095 | 90774649 | 1 | 53132 | 0 | 31449 | 84581 |
| S/G/Y/R/B/O |
NT_029235 | AC109354 | 91143937 | 1 | chr2 | NT_029235 | AC093616 | 91043310 | 1 | 87757 | 0 | 3388 | 91145 |
| S/G/Y/R/B/O |
NT_029235 | AC109354 | 91143937 | 1 |   |   | AC111200 | 1623208 | 1 | 40434 | 2498 | 5318 | 48250 |
| S/G/Y/R/B/O |
NT_029235 | AC108479 | 91321521 | 1 | chr2 | NT_029235 | AC013819 | 91465571 | 1 | 74053 | 4538 | 9286 | 87877 |
| S/G/Y/R/B/O |
NT_029235 | AC108479 | 91321521 | 1 | chr2 | NT_029235 | AC080095 | 90774649 | 1 | 31397 | 0 | 0 | 31397 |
| S/G/Y/R/B/O |
NT_029235 | AC108479 | 91321521 | 1 | chr2 | NT_033003 | AC112696 | 90371098 | 1 | 14217 | 0 | 0 | 14217 |
| S/G/Y/R/B/O |
NT_029235 | AC108479 | 91321521 | 1 |   |   | AC111200 | 91143937 | 1 | 14634 | 1964 | 7994 | 24592 |
| S/G/Y/R/B/O |
NT_029235 | AC013819 | 91465571 | 1 | chr2 | NT_029235 | AC092836 | 91522023 | 3 | 67539 | 0 | 0 | 67539 |
| S/G/Y/R/B/O |
NT_029235 | AC092836 | 91522023 | 3 | chr2 | NT_029235 | AC104081 | 91681344 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_029235 | AC104081 | 91681344 | 3 | chr2 | NT_029235 | AC012671 | 91823462 | 3 | 79126 | 0 | 0 | 79126 |
| S/G/Y/R/B/O |
NT_029235 | AC012671 | 91823462 | 3 | chr2 | NT_029235 | AC104134 | 91942537 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_029235 | AC104134 | 91942537 | 3 | chr2 | NT_029235 | AC062029 | 92050664 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_029235 | AC062029 | 92050664 | 3 | chr2 | NT_029235 | AC096579 | 92176496 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 | chr2 | NT_029235 | AC096767 | 92353051 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | AC104601 | 19191633 | 1 | 52149 | 0 | 0 | 52149 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | AF017732 | 19191633 | 3 | 51053 | 0 | 0 | 51053 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | AP001211 | 19191633 | 3 | 23484 | 0 | 0 | 23484 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | AP001215 | 19191633 | 3 | 37199 | 0 | 0 | 37199 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | AP001233 | 19191633 | 3 | 13743 | 0 | 0 | 13743 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | AP001234 | 19191633 | 3 | 37683 | 0 | 0 | 37683 |
| S/G/Y/R/B/O |
NT_029235 | AC096579 | 92176496 | 3 |   |   | NG_000834 | 19191633 | 3 | 76185 | 0 | 0 | 76185 |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   | AC104601 | 19191633 | 1 | 56165 | 0 | 0 | 56165 |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   | AP001209 | 138671149 | 3 | 34166 | 0 | 0 | 34166 |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   | AP001230 | 138671149 | 3 | 35986 | 0 | 0 | 35986 |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   | AP001240 | 138671149 | 3 | 37044 | 0 | 0 | 37044 |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   | AP001241 | 138671149 | 3 | 38396 | 0 | 0 | 38396 |
| S/G/Y/R/B/O |
NT_029235 | AC096767 | 92353051 | 3 |   |   | NG_000834 | 138671149 | 3 | 143195 | 0 | 0 | 143195 |
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