Chromosome 2 - Clone Overlaps - Single Contig
Description of this page
Main Reports Page
Main Assembly Page
Main Overlap Page
Whole Chromosome
Single Contigs
Line color code:
White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly
NT_033005
NT_022221
NT_022139
NT_022270
NT_022194
NT_022327
NT_005334
NT_033008
NT_033000
NT_005214
NT_033002
NT_022227
NT_015926
NT_005204
NT_030589
NT_005367
NT_015120
NT_026239
NT_005389
NT_005399
NT_005375
NT_032985
NT_032982
NT_032996
NT_033007
NT_033006
NT_032984
NT_032999
NT_022354
NT_033004
NT_022184
NT_005322
NT_022143
NT_015805
NT_033003
NT_032992
NT_029235
NT_032994
NT_022300
NT_026970
NT_032987
NT_022171
NT_032997
NT_005429
NT_005224
NT_029895
NT_022240
NT_031762
NT_032990
NT_019306
NT_026982
NT_030595
NT_022222
NT_029927
NT_005079
NT_022135
NT_032991
NT_022140
NT_029911
NT_028068
NT_030590
NT_005058
NT_029926
NT_005129
NT_022172
NT_005273
NT_005435
NT_005151
NT_031761
NT_022154
NT_005343
NT_005332
NT_025652
NT_032998
NT_005265
NT_005031
NT_022339
NT_030600
NT_022197
NT_005483
NT_005062
NT_022155
NT_032995
NT_005190
NT_030603
NT_005417
NT_028103
NT_033001
NT_005037
NT_005229
NT_005370
NT_005034
NT_005078
NT_005486
NT_031748
NT_005337
NT_005403
NT_032986
NT_022115
NT_005414
NT_022315
NT_005120
NT_022173
NT_022388
NT_005416
NT_005472
NT_022250
NT_032981
NT_026250
NT_005399
Links
Contig1
Acc1
Start1
Phs
Chr2
Contig2
Acc2
Start2
Phs
Strong Overlap
Medium Overlap
Weak Overlap
Total Overlap
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC064806
61444702
1
chr2
NT_005399
AC007179
61446961
3
36008
1701
3870
41579
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC064806
61444702
1
chr2
NT_005399
AC007006
61606752
3
88926
13373
1708
104007
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC064806
61444702
1
chr2
NT_005399
AC007100
61718579
3
29450
1868
0
31318
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC064806
61444702
1
 
 
AC015740
61446961
1
18214
5212
0
23426
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007179
61446961
3
chr2
NT_005399
AC007006
61606752
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007179
61446961
3
chr2
NT_005389
AC114792
61274660
1
99964
0
0
99964
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007006
61606752
3
chr2
NT_005399
AC007100
61718579
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007006
61606752
3
chr2
NT_005399
AC064806
61444702
1
88926
13373
1708
104007
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007006
61606752
3
 
 
AC015740
61446961
1
11634
0
5807
17441
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007100
61718579
3
chr2
NT_005399
AC009482
61928723
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007100
61718579
3
chr2
NT_005399
AC064806
61444702
1
29450
1868
0
31318
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007100
61718579
3
 
 
AC015740
61928723
1
98095
0
22529
120624
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC009482
61928723
3
chr2
NT_005399
AC007132
62038105
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007132
62038105
3
chr2
NT_005399
AC007037
62195684
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007037
62195684
3
chr2
NT_005399
AC007381
62363568
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007037
62195684
3
 
 
AC048389
62363568
1
107789
0
1296
109085
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007381
62363568
3
chr2
NT_005399
AC009970
62515449
3
2000
0
0
2000
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC007381
62363568
3
 
 
AC048389
62515449
1
72501
2562
0
75063
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC009970
62515449
3
chr2
NT_005399
AC012498
62650458
3
0
0
0
0
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC009970
62515449
3
 
 
AC040935
62363568
1
70259
16777
3770
90806
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC012498
62650458
3
chr2
NT_005399
AC011245
62830759
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC012498
62650458
3
 
 
AC040935
62830759
1
51178
1499
0
52677
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC011245
62830759
3
chr2
NT_005399
AC010733
62887740
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC010733
62887740
3
chr2
NT_005399
AC074249
63096600
3
0
1997
0
1997
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC074249
63096600
3
chr2
NT_005399
AC016747
63098594
3
0
1999
0
1999
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC016747
63098594
3
chr2
NT_005399
AC018889
63248939
3
2000
0
0
2000
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC018889
63248939
3
chr2
NT_005399
AC016894
63341023
3
2000
0
0
2000
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC016894
63341023
3
chr2
NT_005399
AC016727
63474183
3
0
0
200
200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC016894
63341023
3
 
 
AC093869
63248939
1
63631
1730
29163
94524
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC016727
63474183
3
chr2
NT_005399
AC000360
63633675
3
44866
0
0
44866
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC016727
63474183
3
chr2
NT_005399
AC092103
63724963
1
67200
0
0
67200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC016727
63474183
3
 
 
AC093869
63724963
1
28839
0
29512
58351
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC000360
63633675
3
chr2
NT_005399
AC092103
63724963
1
0
0
94087
94087
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC092103
63724963
1
chr2
NT_005399
AC108039
63775623
3
36901
0
0
36901
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC092103
63724963
1
chr2
NT_005399
AC016727
63474183
3
67200
0
0
67200
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC108039
63775623
3
chr2
NT_005399
AC074251
63906814
1
26937
2517
24558
54012
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC108039
63775623
3
chr2
NT_005399
AC107081
63920727
1
17851
0
0
17851
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC074251
63906814
1
chr2
NT_005399
AC107081
63920727
1
33664
0
40233
73897
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC107081
63920727
1
 
 
 
 
 
 
 
 
 
S
/
G
/
Y
/
R
/
B
/
O
NT_005399
AC107081
63920727
1
chr2
NT_005399
AC108039
63775623
3
17851
0
0
17851