Chromosome 2 - Clone Overlaps

Chromosome 2 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005332

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005332	AC104064	173074823	1	chr2	NT_005332	AC068280	173188729	3	65902	0	0	65902
S/G/Y/R/B/O	NT_005332	AC068280	173188729	3	chr2	NT_005332	AC012594	173281216	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC012594	173281216	3	chr2	NT_005332	AC093402	173445918	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC093402	173445918	3	chr2	NT_005332	AC007277	173447912	3	0	1996	0	1996
S/G/Y/R/B/O	NT_005332	AC007277	173447912	3	chr2	NT_005332	AC007405	173626132	3	0	0	200	200
S/G/Y/R/B/O	NT_005332	AC007405	173626132	3	chr2	NT_005332	AC010092	173819144	3	0	0	200	200
S/G/Y/R/B/O	NT_005332	AC010092	173819144	3	chr2	NT_005332	AC009953	173959170	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC010092	173819144	3			AC067806	173626132	1	37564	34131	9735	81430
S/G/Y/R/B/O	NT_005332	AC010092	173819144	3			AC084284	173626132	1	43268	13919	38389	95576
S/G/Y/R/B/O	NT_005332	AC009953	173959170	3	chr2	NT_005332	AC007739	174119780	3	0	0	200	200
S/G/Y/R/B/O	NT_005332	AC009953	173959170	3			AC067806	174119780	1	31814	1513	2291	35618
S/G/Y/R/B/O	NT_005332	AC009953	173959170	3			AC084284	174119780	1	29431	5417	6998	41846
S/G/Y/R/B/O	NT_005332	AC007739	174119780	3	chr2	NT_005332	AC008065	174278703	3	0	0	200	200
S/G/Y/R/B/O	NT_005332	AC008065	174278703	3	chr2	NT_005332	AC007969	174338997	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC008065	174278703	3			AC079152	174119780	1	28098	5147	17277	50522
S/G/Y/R/B/O	NT_005332	AC007969	174338997	3	chr2	NT_005332	AC064826	174501557	3	0	1974	0	1974
S/G/Y/R/B/O	NT_005332	AC007969	174338997	3			AC079152	174501557	1	36067	3431	37764	77262
S/G/Y/R/B/O	NT_005332	AC064826	174501557	3	chr2	NT_005332	AC068039	174636371	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC068039	174636371	3	chr2	NT_005332	AC114745	174833885	1	29042	0	17715	46757
S/G/Y/R/B/O	NT_005332	AC114745	174833885	1	chr2	NT_005332	AC015976	174865320	3	0	0	43334	43334
S/G/Y/R/B/O	NT_005332	AC015976	174865320	3	chr2	NT_005332	AC104801	175034872	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC015976	174865320	3			AC023925	174636371	1	48693	0	0	48693
S/G/Y/R/B/O	NT_005332	AC015976	174865320	3			AC053469	174636371	1	19951	2512	2649	25112
S/G/Y/R/B/O	NT_005332	AC104801	175034872	3	chr2	NT_005332	AC104088	175165516	1	17937	0	0	17937
S/G/Y/R/B/O	NT_005332	AC104801	175034872	3			AC023925	174833885	1	129663	0	0	129663
S/G/Y/R/B/O	NT_005332	AC104801	175034872	3			AC053469	174833885	1	47540	28074	20473	96087
S/G/Y/R/B/O	NT_005332	AC104088	175165516	1	chr2	NT_005332	AC078883	175320370	3	42679	0	0	42679
S/G/Y/R/B/O	NT_005332	AC104088	175165516	1			AC023925	175165516	1	17937	0	0	17937
S/G/Y/R/B/O	NT_005332	AC078883	175320370	3	chr2	NT_005332	AC104659	175489956	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC078883	175320370	3			AF166336	175489956	3	11622	0	0	11622
S/G/Y/R/B/O	NT_005332	AC104659	175489956	3	chr2	NT_005332	AC093818	175491950	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC093818	175491950	3	chr2	NT_005332	AC018712	175536274	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC018712	175536274	3	chr2	NT_005332	AC009484	175691107	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC009484	175691107	3	chr2	NT_005332	AC104086	175896981	3	0	1998	0	1998
S/G/Y/R/B/O	NT_005332	AC009484	175691107	3	chr12	NT_009690	AC090040	94030685	1	23327	21825	7550	52702
S/G/Y/R/B/O	NT_005332	AC009484	175691107	3			AC016789	175491950	1	21323	0	1264	22587
S/G/Y/R/B/O	NT_005332	AC009484	175691107	3			AC067851	175491950	1	83977	15437	6919	106333
S/G/Y/R/B/O	NT_005332	AC104086	175896981	3	chr2	NT_005332	AC019046	175912475	3	0	1997	0	1997
S/G/Y/R/B/O	NT_005332	AC104086	175896981	3			AC067851	175912475	1	12311	71	0	12382
S/G/Y/R/B/O	NT_005332	AC019046	175912475	3	chr2	NT_005332	AC013461	176090178	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC019046	175912475	3			AC016789	176090178	1	135807	2426	0	138233
S/G/Y/R/B/O	NT_005332	AC019046	175912475	3			AC067851	176090178	1	16123	2455	0	18578
S/G/Y/R/B/O	NT_005332	AC013461	176090178	3	chr2	NT_005332	AC092573	176195299	3	0	1984	0	1984
S/G/Y/R/B/O	NT_005332	AC092573	176195299	3	chr2	NT_005332	AC073465	176364580	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC092573	176195299	3			AC011667	176195299	1	114669	4558	3173	122400
S/G/Y/R/B/O	NT_005332	AC092573	176195299	3			AC012052	176195299	1	91118	8285	16126	115529
S/G/Y/R/B/O	NT_005332	AC073465	176364580	3	chr2	NT_005332	AC013410	176498332	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC073465	176364580	3			AC011667	176090178	1	91880	0	0	91880
S/G/Y/R/B/O	NT_005332	AC073465	176364580	3			AC012052	176090178	1	90287	0	0	90287
S/G/Y/R/B/O	NT_005332	AC013410	176498332	3	chr2	NT_005332	AC106900	176697232	1	38435	0	0	38435
S/G/Y/R/B/O	NT_005332	AC013410	176498332	3			AC018930	66641626	1	156727	0	6181	162908
S/G/Y/R/B/O	NT_005332	AC106900	176697232	1	chr2	NT_005332	AC110808	176787462	1	28013	0	29021	57034
S/G/Y/R/B/O	NT_005332	AC106900	176697232	1	chr2	NT_005332	AC093399	176824725	1	40205	3534	2150	45889
S/G/Y/R/B/O	NT_005332	AC110808	176787462	1	chr2	NT_005332	AC093399	176824725	1	86677	15191	11593	113461
S/G/Y/R/B/O	NT_005332	AC110808	176787462	1	chr2	NT_005332	AC016737	176891346	3	60569	0	5819	66388
S/G/Y/R/B/O	NT_005332	AC093399	176824725	1	chr2	NT_005332	AC016737	176891346	3	44001	11240	6879	62120
S/G/Y/R/B/O	NT_005332	AC093399	176824725	1	chr2	NT_005332	AC106900	176697232	1	40205	3534	2150	45889
S/G/Y/R/B/O	NT_005332	AC016737	176891346	3	chr2	NT_005332	AC013467	177087431	3	0	0	200	200
S/G/Y/R/B/O	NT_005332	AC016737	176891346	3	chr2	NT_005332	AC110808	176787462	1	60569	0	5819	66388
S/G/Y/R/B/O	NT_005332	AC013467	177087431	3	chr2	NT_005332	AC018470	177260197	3	0	0	200	200
S/G/Y/R/B/O	NT_005332	AC018470	177260197	3	chr2	NT_005332	AC010894	177434434	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC010894	177434434	3	chr2	NT_005332	AC104595	177614097	3	0	1999	0	1999
S/G/Y/R/B/O	NT_005332	AC104595	177614097	3	chr2	NT_005332	AC018890	177655430	3	0	1995	0	1995
S/G/Y/R/B/O	NT_005332	AC104595	177614097	3			AC025927	177655430	1	14047	0	0	14047
S/G/Y/R/B/O	NT_005332	AC018890	177655430	3	chr2	NT_005332	AC020596	177829395	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC018890	177655430	3			AC025927	177655430	1	147832	12108	3128	163068
S/G/Y/R/B/O	NT_005332	AC020596	177829395	3	chr2	NT_005332	AC007435	177959418	3	59224	0	0	59224
S/G/Y/R/B/O	NT_005332	AC020596	177829395	3			AC074393	177959418	1	31469	0	46238	77707
S/G/Y/R/B/O	NT_005332	AC020596	177829395	3			AL161794	177959418	1	55349	0	0	55349
S/G/Y/R/B/O	NT_005332	AC007435	177959418	3	chr2	NT_005332	AC074291	178078536	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC007435	177959418	3	chr2	NT_005332	AL357128	178088333	1	11691	0	0	11691
S/G/Y/R/B/O	NT_005332	AC007435	177959418	3			AC074393	177829395	1	104213	0	47438	151651
S/G/Y/R/B/O	NT_005332	AC007435	177959418	3			AL161794	177829395	1	152331	0	19822	172153
S/G/Y/R/B/O	NT_005332	AC074291	178078536	3	chr2	NT_005332	AL357128	178088333	1	11786	0	0	11786
S/G/Y/R/B/O	NT_005332	AL357128	178088333	1	chr2	NT_005332	AC096649	178115818	3	94215	0	6666	100881
S/G/Y/R/B/O	NT_005332	AL357128	178088333	1	chr2	NT_005332	AC007435	177959418	3	11691	0	0	11691
S/G/Y/R/B/O	NT_005332	AL357128	178088333	1			AC011574	177959418	1	83341	2889	9900	96130
S/G/Y/R/B/O	NT_005332	AL357128	178088333	1			AL161794	178115818	1	11671	0	0	11671
S/G/Y/R/B/O	NT_005332	AC096649	178115818	3	chr2	NT_005332	AC093459	178288536	3	0	1995	0	1995
S/G/Y/R/B/O	NT_005332	AC096649	178115818	3			AC011574	178115818	1	115430	2973	1184	119587
S/G/Y/R/B/O	NT_005332	AC096649	178115818	3			AC012273	178115818	1	16760	0	0	16760
S/G/Y/R/B/O	NT_005332	AC093459	178288536	3	chr2	NT_005332	AC069384	178363063	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC093459	178288536	3			AC012273	178088333	1	76483	0	0	76483
S/G/Y/R/B/O	NT_005332	AC069384	178363063	3	chr2	NT_005332	AC103916	178528038	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005332	AC069384	178363063	3			AC012273	178115818	1	68113	0	0	68113
S/G/Y/R/B/O	NT_005332	AC103916	178528038	3	chr2	NT_005332	AC016761	178608749	3	0	1992	0	1992
S/G/Y/R/B/O	NT_005332	AC016761	178608749	3	chr2	NT_005332	AC016751	178766093	3	0	0	0	0
S/G/Y/R/B/O	NT_005332	AC016751	178766093	3	chr2	NT_005332	AC016915	178942272	3	0	1999	0	1999
S/G/Y/R/B/O	NT_005332	AC016915	178942272	3	chr2	NT_005332	AC009336	178973653	3	0	1996	0	1996
S/G/Y/R/B/O	NT_005332	AC016915	178942272	3			AF415204	178766093	3	15593	0	0	15593
S/G/Y/R/B/O	NT_005332	AC009336	178973653	3
S/G/Y/R/B/O	NT_005332	AC009336	178973653	3			AB032481	178766093	3	10724	0	0	10724
S/G/Y/R/B/O	NT_005332	AC009336	178973653	3			Y09980	163310714	3	18531	0	0	18531