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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_015120 | AC083827 | 48747567 | 1 | chr2 | NT_015120 | AC009975 | 48761039 | 3 | 45223 | 2400 | 0 | 47623 |
| S/G/Y/R/B/O |
NT_015120 | AC083827 | 48747567 | 1 | chr2 | NT_015120 | AC092533 | 52003694 | 3 | 53065 | 9272 | 11838 | 74175 |
| S/G/Y/R/B/O |
NT_015120 | AC009975 | 48761039 | 3 | chr2 | NT_015120 | AC073955 | 48972344 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_015120 | AC009975 | 48761039 | 3 |   |   | AC079114 | 48972344 | 1 | 54851 | 0 | 5109 | 59960 |
| S/G/Y/R/B/O |
NT_015120 | AC073955 | 48972344 | 3 | chr2 | NT_015120 | AC009971 | 49016852 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC073955 | 48972344 | 3 |   |   | AC079114 | 48761039 | 1 | 46546 | 0 | 0 | 46546 |
| S/G/Y/R/B/O |
NT_015120 | AC009971 | 49016852 | 3 | chr2 | NT_015120 | AC104622 | 49210767 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_015120 | AC009971 | 49016852 | 3 |   |   | AC026126 | 48761039 | 3 | 144423 | 0 | 0 | 144423 |
| S/G/Y/R/B/O |
NT_015120 | AC009971 | 49016852 | 3 |   |   | AC079114 | 48761039 | 1 | 51298 | 0 | 0 | 51298 |
| S/G/Y/R/B/O |
NT_015120 | AC104622 | 49210767 | 3 | chr2 | NT_015120 | AC068291 | 49261881 | 1 | 50165 | 0 | 0 | 50165 |
| S/G/Y/R/B/O |
NT_015120 | AC068291 | 49261881 | 1 | chr2 | NT_015120 | AC109817 | 49371837 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_015120 | AC109817 | 49371837 | 3 | chr2 | NT_015120 | AC078994 | 49402678 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC109817 | 49371837 | 3 |   |   | AC008247 | 131996116 | 1 | 10929 | 0 | 1786 | 12715 |
| S/G/Y/R/B/O |
NT_015120 | AC078994 | 49402678 | 3 | chr2 | NT_015120 | AC069550 | 49580294 | 3 | 3310 | 0 | 0 | 3310 |
| S/G/Y/R/B/O |
NT_015120 | AC078994 | 49402678 | 3 |   |   | AC008247 | 98060554 | 1 | 121966 | 13387 | 6165 | 141518 |
| S/G/Y/R/B/O |
NT_015120 | AC078994 | 49402678 | 3 |   |   | AC011931 | 98060554 | 1 | 152035 | 0 | 24753 | 176788 |
| S/G/Y/R/B/O |
NT_015120 | AC069550 | 49580294 | 3 | chr2 | NT_015120 | AC068725 | 49743038 | 3 | 17492 | 0 | 0 | 17492 |
| S/G/Y/R/B/O |
NT_015120 | AC069550 | 49580294 | 3 |   |   | AC008247 | 49580294 | 1 | 21191 | 2590 | 0 | 23781 |
| S/G/Y/R/B/O |
NT_015120 | AC069550 | 49580294 | 3 |   |   | AC068055 | 143327969 | 1 | 14284 | 8852 | 8568 | 31704 |
| S/G/Y/R/B/O |
NT_015120 | AC068725 | 49743038 | 3 | chr2 | NT_015120 | AC068715 | 49891106 | 3 | 45738 | 0 | 0 | 45738 |
| S/G/Y/R/B/O |
NT_015120 | AC068725 | 49743038 | 3 |   |   | AC068055 | 49402678 | 1 | 35318 | 22397 | 43033 | 100748 |
| S/G/Y/R/B/O |
NT_015120 | AC068715 | 49891106 | 3 | chr2 | NT_015120 | AC007462 | 50006734 | 3 | 42893 | 0 | 0 | 42893 |
| S/G/Y/R/B/O |
NT_015120 | AC007462 | 50006734 | 3 | chr2 | NT_015120 | AC009234 | 50127305 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC009234 | 50127305 | 3 | chr2 | NT_015120 | AC007560 | 50284394 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_015120 | AC009234 | 50127305 | 3 |   |   | AC068246 | 50284394 | 1 | 65373 | 2403 | 1072 | 68848 |
| S/G/Y/R/B/O |
NT_015120 | AC009234 | 50127305 | 3 |   |   | AC093632 | 50284394 | 1 | 50175 | 0 | 45685 | 95860 |
| S/G/Y/R/B/O |
NT_015120 | AC007560 | 50284394 | 3 | chr2 | NT_015120 | AC007682 | 50408379 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_015120 | AC007560 | 50284394 | 3 |   |   | AC068246 | 50127305 | 1 | 65803 | 1818 | 0 | 67621 |
| S/G/Y/R/B/O |
NT_015120 | AC007560 | 50284394 | 3 |   |   | AC093632 | 50127305 | 1 | 53972 | 0 | 15634 | 69606 |
| S/G/Y/R/B/O |
NT_015120 | AC007682 | 50408379 | 3 | chr2 | NT_015120 | AC010721 | 50598147 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_015120 | AC007682 | 50408379 | 3 |   |   | AC027431 | 50598147 | 1 | 81375 | 1820 | 1983 | 85178 |
| S/G/Y/R/B/O |
NT_015120 | AC010721 | 50598147 | 3 | chr2 | NT_015120 | AC007680 | 50677864 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_015120 | AC010721 | 50598147 | 3 |   |   | AC027431 | 50408379 | 1 | 67697 | 1791 | 0 | 69488 |
| S/G/Y/R/B/O |
NT_015120 | AC007680 | 50677864 | 3 | chr2 | NT_015120 | AC007402 | 50823997 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_015120 | AC007402 | 50823997 | 3 | chr2 | NT_015120 | AC080091 | 51014901 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC007402 | 50823997 | 3 |   |   | AC074235 | 50677864 | 1 | 87230 | 0 | 0 | 87230 |
| S/G/Y/R/B/O |
NT_015120 | AC080091 | 51014901 | 3 | chr2 | NT_015120 | AC064868 | 51173514 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_015120 | AC080091 | 51014901 | 3 |   |   | AC074235 | 51173514 | 1 | 109701 | 0 | 0 | 109701 |
| S/G/Y/R/B/O |
NT_015120 | AC064868 | 51173514 | 3 | chr2 | NT_015120 | AC097463 | 51349695 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC097463 | 51349695 | 3 | chr2 | NT_015120 | AC079304 | 51506170 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC097463 | 51349695 | 3 |   |   | AC012058 | 51014901 | 1 | 127201 | 1985 | 0 | 129186 |
| S/G/Y/R/B/O |
NT_015120 | AC079304 | 51506170 | 3 | chr2 | NT_015120 | AC104310 | 51692301 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC104310 | 51692301 | 3 | chr2 | NT_015120 | AC079300 | 51694295 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC079300 | 51694295 | 3 | chr2 | NT_015120 | AC087073 | 51806184 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_015120 | AC087073 | 51806184 | 3 | chr2 | NT_015120 | AC092572 | 51945625 | 1 | 104643 | 0 | 0 | 104643 |
| S/G/Y/R/B/O |
NT_015120 | AC092572 | 51945625 | 1 | chr2 | NT_015120 | AC092533 | 52003694 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC092572 | 51945625 | 1 | chr2 | NT_015120 | AC073513 | 52203198 | 1 | 41501 | 12759 | 0 | 54260 |
| S/G/Y/R/B/O |
NT_015120 | AC092533 | 52003694 | 3 | chr2 | NT_015120 | AC079394 | 52123382 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC092533 | 52003694 | 3 | chr2 | NT_015120 | AC083827 | 48747567 | 1 | 53065 | 9272 | 11838 | 74175 |
| S/G/Y/R/B/O |
NT_015120 | AC079394 | 52123382 | 3 | chr2 | NT_015120 | AC073513 | 52203198 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC073513 | 52203198 | 1 | chr2 | NT_015120 | AC091485 | 52326068 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC073513 | 52203198 | 1 | chr2 | NT_015120 | AC092572 | 51945625 | 1 | 41501 | 12759 | 0 | 54260 |
| S/G/Y/R/B/O |
NT_015120 | AC091485 | 52326068 | 1 | chr2 | NT_015120 | AC093732 | 52337534 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC091485 | 52326068 | 1 | chr2 | NT_015120 | AC092791 | 53043519 | 3 | 40187 | 3501 | 4643 | 48331 |
| S/G/Y/R/B/O |
NT_015120 | AC091485 | 52326068 | 1 | chr2 | NT_015120 | AC093635 | 52852302 | 3 | 11564 | 3324 | 10483 | 25371 |
| S/G/Y/R/B/O |
NT_015120 | AC091485 | 52326068 | 1 |   |   | AC036199 | 51945625 | 1 | 34526 | 3501 | 10147 | 48174 |
| S/G/Y/R/B/O |
NT_015120 | AC091485 | 52326068 | 1 |   |   | AC112648 | 31492001 | 1 | 35279 | 3438 | 9505 | 48222 |
| S/G/Y/R/B/O |
NT_015120 | AC093732 | 52337534 | 1 | chr2 | NT_015120 | AC007189 | 52369258 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC093732 | 52337534 | 1 | chr2 | NT_015120 | AC073283 | 54094830 | 3 | 13809 | 0 | 0 | 13809 |
| S/G/Y/R/B/O |
NT_015120 | AC007189 | 52369258 | 3 | chr2 | NT_015120 | AC091788 | 52521847 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC091788 | 52521847 | 3 | chr2 | NT_015120 | AC087816 | 52612779 | 3 | 0 | 2000 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC087816 | 52612779 | 3 | chr2 | NT_015120 | AC073082 | 52677255 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC073082 | 52677255 | 3 | chr2 | NT_015120 | AC093635 | 52852302 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_015120 | AC093635 | 52852302 | 3 | chr2 | NT_015120 | AC092791 | 53043519 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC093635 | 52852302 | 3 | chr2 | NT_015120 | AC091485 | 52326068 | 1 | 11564 | 3324 | 10483 | 25371 |
| S/G/Y/R/B/O |
NT_015120 | AC092791 | 53043519 | 3 | chr2 | NT_015120 | AC092650 | 53175170 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC092791 | 53043519 | 3 | chr2 | NT_015120 | AC091485 | 52326068 | 1 | 40187 | 3501 | 4643 | 48331 |
| S/G/Y/R/B/O |
NT_015120 | AC092791 | 53043519 | 3 |   |   | AC036199 | 31492001 | 1 | 133795 | 0 | 3088 | 136883 |
| S/G/Y/R/B/O |
NT_015120 | AC092791 | 53043519 | 3 |   |   | AC064831 | 31492001 | 1 | 55546 | 1979 | 0 | 57525 |
| S/G/Y/R/B/O |
NT_015120 | AC092791 | 53043519 | 3 |   |   | AC112648 | 52326068 | 1 | 49565 | 0 | 8067 | 57632 |
| S/G/Y/R/B/O |
NT_015120 | AC092650 | 53175170 | 3 | chr2 | NT_015120 | AC105913 | 53354268 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_015120 | AC092650 | 53175170 | 3 |   |   | AC036199 | 52326068 | 1 | 36902 | 2946 | 0 | 39848 |
| S/G/Y/R/B/O |
NT_015120 | AC092650 | 53175170 | 3 |   |   | AC064831 | 52326068 | 1 | 112467 | 2827 | 1382 | 116676 |
| S/G/Y/R/B/O |
NT_015120 | AC092650 | 53175170 | 3 |   |   | AC112648 | 53354268 | 1 | 23421 | 0 | 19015 | 42436 |
| S/G/Y/R/B/O |
NT_015120 | AC105913 | 53354268 | 3 | chr2 | NT_015120 | AC079807 | 53361588 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_015120 | AC079807 | 53361588 | 3 | chr2 | NT_015120 | AC006509 | 53515767 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_015120 | AC079807 | 53361588 | 3 |   |   | AC026632 | 53175170 | 1 | 40554 | 9378 | 0 | 49932 |
| S/G/Y/R/B/O |
NT_015120 | AC006509 | 53515767 | 3 | chr2 | NT_015120 | AC079250 | 53639782 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_015120 | AC006509 | 53515767 | 3 |   |   | AC026632 | 53354268 | 1 | 58078 | 14547 | 9181 | 81806 |
| S/G/Y/R/B/O |
NT_015120 | AC006509 | 53515767 | 3 |   |   | AC092678 | 53639782 | 1 | 31480 | 0 | 46038 | 77518 |
| S/G/Y/R/B/O |
NT_015120 | AC006509 | 53515767 | 3 |   |   | AY082894 | 53639782 | 3 | 26715 | 0 | 0 | 26715 |
| S/G/Y/R/B/O |
NT_015120 | AC079250 | 53639782 | 3 | chr2 | NT_015120 | AC009600 | 53718731 | 2 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_015120 | AC079250 | 53639782 | 3 |   |   | AC092678 | 53718731 | 1 | 22315 | 0 | 0 | 22315 |
| S/G/Y/R/B/O |
NT_015120 | AC009600 | 53718731 | 2 | chr2 | NT_015120 | AC079775 | 53855875 | 3 | 78103 | 0 | 0 | 78103 |
| S/G/Y/R/B/O |
NT_015120 | AC079775 | 53855875 | 3 | chr2 | NT_015120 | AC108207 | 54025862 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC079775 | 53855875 | 3 |   |   | AF020057 | 54025862 | 3 | 13454 | 0 | 0 | 13454 |
| S/G/Y/R/B/O |
NT_015120 | AC108207 | 54025862 | 3 | chr2 | NT_015120 | AC106869 | 54027856 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_015120 | AC106869 | 54027856 | 3 | chr2 | NT_015120 | AC073283 | 54094830 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_015120 | AC073283 | 54094830 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_015120 | AC073283 | 54094830 | 3 | chr2 | NT_015120 | AC093732 | 52337534 | 1 | 13809 | 0 | 0 | 13809 |
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