Chromsome Reports

Chromosome 8 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_008060	NT_023779	NT_034888	NT_023744	NT_034889	NT_023736	NT_019483	NT_034992
NT_008010	NT_034890	NT_034891	NT_015280	NT_030737	NT_023704	NT_008205	NT_008300
NT_023666	NT_007988	NT_030743	NT_033197	NT_034923	NT_007995	NT_008251	NT_008045
NT_034911	NT_008176	NT_034910	NT_034921	NT_008216	NT_034892	NT_023678	NT_017431
NT_023806	NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101
NT_008050	NT_008231	NT_008183	NT_034893	NT_034894	NT_029343	NT_008218	NT_030735
NT_008166	NT_023676	NT_023821	NT_034895	NT_008209	NT_008055	NT_008186	NT_034896
NT_007972	NT_008292	NT_034897	NT_008117	NT_023717	NT_034898	NT_008007	NT_034899
NT_008059	NT_008046	NT_034900	NT_008048	NT_023811	NT_031821	NT_023663	NT_008157
NT_023726	NT_008023	NT_030744	NT_023709	NT_008150	NT_025796	NT_034912	NT_007994
NT_028251	NT_034973	NT_034970	NT_023662	NT_033193	NT_023838	NT_008104	NT_034901
NT_033185	NT_027068	NT_030032	NT_033192	NT_008127	NT_023684	NT_031818

NT_007995

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_007995	AC108926	29600528	3	none	none	1 blue	1 confirm
NT_007995	AC091165	29627329	3	none	none	none	11 confirm
NT_007995	AC044849	29802939	1	none	1 blue	3 blue 2 green 1 pink	5 confirm
NT_007995	AC026979	29879311	1	none	1 blue	7 blue 4 green 1 pink	8 confirm
NT_007995	AC090820	30007671	3	1 blue	none	1 blue	5 confirm
NT_007995	AC109329	30008369	2	none	none	1 red	13 confirm
NT_007995	AC011204	30272584	3	1 blue	none	4 blue	15 confirm
NT_007995	AC102945	30320012	3	none	1 blue	6 blue	13 confirm
NT_007995	AF215848	30433756	1	1 blue	1 blue	2 blue	2 confirm
NT_007995	AC009314	30439944	3	none	2 blue	11 blue	16 confirm
NT_007995	AC008066	30708843	3	1 blue	1 blue	1 blue	19 confirm
NT_007995	AC084736	30746790	3	none	none	2 blue	23 confirm
NT_007995	AC009563	30911119	2	none	none	1 blue 1 red	14 confirm
NT_007995	AC104044	31234774	2	2 blue	2 blue	1 blue	7 confirm
NT_007995	AC068672	31141783	2	1 blue	1 blue	none	19 confirm
NT_007995	AC090816	31156294	1	none	none	none	6 confirm
NT_007995	AC004040	31307419	3	none	none	none	0 confirm
NT_007995	AC104000	31309652	3	none	none	none	13 confirm
NT_007995	AC104029	31415450	2	none	none	2 blue	15 confirm
NT_007995	AC068931	31596467	3	1 blue	1 blue	none	14 confirm
NT_007995	AC022833	31720108	3	1 blue	none	none	20 confirm
NT_007995	AC021909	31778572	3	none	none	1 blue	9 confirm
NT_007995	AC022850	31971724	3	1 blue	1 blue	1 blue	23 confirm
NT_007995	AC023948	32046505	2	1 blue	none	none	5 confirm
NT_007995	AC068359	32092789	2	none	none	1 blue	16 confirm

NT_007995 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_007995	AC083977	32272119	3	2 blue	1 blue	none	15 confirm	0 weak
NT_007995	AC013561	32453114	3	1 blue	1 blue	2 blue	6 confirm	0 weak
NT_007995	AC103675	32500524	3	none	none	3 blue	3 confirm	0 weak
NT_007995	AC113209	32518316	3	none	none	none	14 confirm	0 weak
NT_007995	AC090204	32640699	2	none	none	1 blue	21 confirm	0 weak
NT_007995	AC104037	32957550	3	1 blue	1 blue	1 blue	18 confirm	0 weak
NT_007995	AC104005	32966419	3	1 blue	2 blue	2 blue	7 confirm	0 weak
NT_007995	AC104027	33063730	3	none	none	none	6 confirm	0 weak
NT_007995	AC067838	33111174	2	none	none	3 blue 1 red	6 confirm	0 weak
NT_007995	AC090087	33180087	1	none	none	none	1 confirm	0 weak
NT_007995	AC013603	33380207	3	1 blue	none	2 blue	14 confirm	0 weak
NT_007995	AC015779	33448019	3	none	1 blue	none	3 confirm	0 weak
NT_007995	AC090730	33527046	2	4 blue	4 blue	1 blue 1 pink	10 confirm	0 weak
NT_007995	-			0 yellow	0 yellow	5 yellow