Chromsome Reports

Chromosome 8 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_008060	NT_023779	NT_034888	NT_023744	NT_034889	NT_023736	NT_019483	NT_034992
NT_008010	NT_034890	NT_034891	NT_015280	NT_030737	NT_023704	NT_008205	NT_008300
NT_023666	NT_007988	NT_030743	NT_033197	NT_034923	NT_007995	NT_008251	NT_008045
NT_034911	NT_008176	NT_034910	NT_034921	NT_008216	NT_034892	NT_023678	NT_017431
NT_023806	NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101
NT_008050	NT_008231	NT_008183	NT_034893	NT_034894	NT_029343	NT_008218	NT_030735
NT_008166	NT_023676	NT_023821	NT_034895	NT_008209	NT_008055	NT_008186	NT_034896
NT_007972	NT_008292	NT_034897	NT_008117	NT_023717	NT_034898	NT_008007	NT_034899
NT_008059	NT_008046	NT_034900	NT_008048	NT_023811	NT_031821	NT_023663	NT_008157
NT_023726	NT_008023	NT_030744	NT_023709	NT_008150	NT_025796	NT_034912	NT_007994
NT_028251	NT_034973	NT_034970	NT_023662	NT_033193	NT_023838	NT_008104	NT_034901
NT_033185	NT_027068	NT_030032	NT_033192	NT_008127	NT_023684	NT_031818

NT_008023

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_008023	AC024681	125895499	3	none	none	1 pink	10 confirm 3 blue
NT_008023	AC090573	126239073	3	1 blue 1 red	2 blue	1 green	22 confirm
NT_008023	AC087667	126307754	3	2 blue	1 blue	1 blue	24 confirm
NT_008023	AC084116	126457588	1	1 blue	2 blue	2 blue	7 confirm
NT_008023	AC021396	126687913	3	1 blue	1 blue	6 blue	15 confirm
NT_008023	AC083923	126700985	3	none	none	none	2 confirm
NT_008023	AC024382	126736117	1	none	none	none	18 confirm
NT_008023	AC067843	126869329	3	none	none	none	23 confirm
NT_008023	AC020688	127056887	3	none	none	3 blue 1 red	17 confirm
NT_008023	AC027531	127230484	1	none	1 blue	1 blue	5 confirm
NT_008023	AC018714	127252237	3	none	none	none	9 confirm
NT_008023	AC016883	127335515	2	none	1 blue	3 blue	13 confirm
NT_008023	AC104370	127469004	2	none	1 blue	none	10 confirm
NT_008023	AC108925	127603988	2	1 blue	1 blue	none	11 confirm
NT_008023	AF315312	127675260	1	none	1 blue	3 blue	10 confirm
NT_008023	AC084123	127817277	3	none	none	none	11 confirm 34 red
NT_008023	AC009790	127946558	1	1 blue	2 blue	2 blue	5 confirm
NT_008023	AC026248	128039897	3	none	1 blue	1 blue	13 confirm
NT_008023	AC007860	128163891	3	none	none	1 blue	14 confirm
NT_008023	AC100822	128310294	3	1 blue	3 blue	4 blue	26 confirm
NT_008023	AC067844	128549280	3	1 blue	none	none	16 confirm
NT_008023	AC103822	128568027	3	none	none	none	1 confirm
NT_008023	AC015807	128576487	3	none	none	none	12 confirm
NT_008023	AC011198	128725291	3	none	none	none	21 confirm
NT_008023	AC068570	128848401	2	none	none	1 blue	11 confirm

NT_008023 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008023	AC015509	128937899	3	none	none	none	12 confirm	0 weak
NT_008023	AC104256	128990308	2	none	none	none	13 confirm	0 weak
NT_008023	AC103833	129302923	3	1 blue	1 blue	1 blue	20 confirm	0 weak
NT_008023	AC013300	129320844	3	none	none	2 blue	10 confirm	0 weak
NT_008023	AC011257	129477817	3	1 blue	1 blue	none	17 confirm	0 weak
NT_008023	AC011652	129512365	3	none	none	none	3 confirm	0 weak
NT_008023	AC016178	129631721	3	2 blue	1 blue	none	22 confirm	0 weak
NT_008023	AC022849	129748708	3	1 blue	1 blue	none	17 confirm 1 pink	0 weak
NT_008023	AC022973	129899410	3	1 blue	1 blue	3 blue	9 confirm 10 pink	0 weak
NT_008023	AC103813	129970908	3	none	none	none	1 confirm 1 pink	0 weak
NT_008023	-			1 yellow	0 yellow	8 yellow