Chromsome Reports

Chromosome 8 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_008060	NT_023779	NT_034888	NT_023744	NT_034889	NT_023736	NT_019483	NT_034992
NT_008010	NT_034890	NT_034891	NT_015280	NT_030737	NT_023704	NT_008205	NT_008300
NT_023666	NT_007988	NT_030743	NT_033197	NT_034923	NT_007995	NT_008251	NT_008045
NT_034911	NT_008176	NT_034910	NT_034921	NT_008216	NT_034892	NT_023678	NT_017431
NT_023806	NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101
NT_008050	NT_008231	NT_008183	NT_034893	NT_034894	NT_029343	NT_008218	NT_030735
NT_008166	NT_023676	NT_023821	NT_034895	NT_008209	NT_008055	NT_008186	NT_034896
NT_007972	NT_008292	NT_034897	NT_008117	NT_023717	NT_034898	NT_008007	NT_034899
NT_008059	NT_008046	NT_034900	NT_008048	NT_023811	NT_031821	NT_023663	NT_008157
NT_023726	NT_008023	NT_030744	NT_023709	NT_008150	NT_025796	NT_034912	NT_007994
NT_028251	NT_034973	NT_034970	NT_023662	NT_033193	NT_023838	NT_008104	NT_034901
NT_033185	NT_027068	NT_030032	NT_033192	NT_008127	NT_023684	NT_031818

NT_023811

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_023811	AP004581	110934927	1	none	none	none	9 confirm 3 blue
NT_023811	AC009930	111018857	2	none	3 blue	3 blue	11 confirm
NT_023811	AP002980	111208579	3	3 blue	1 blue	none	23 confirm
NT_023811	AC104582	111342573	3	1 blue	1 blue	none	20 confirm
NT_023811	AC020692	111433740	3	none	none	1 blue	18 confirm
NT_023811	AC022360	111601981	3	none	none	1 blue	17 confirm
NT_023811	AC040965	111767724	3	none	none	none	18 confirm
NT_023811	AC105038	111954558	2	none	none	none	10 confirm
NT_023811	AC068954	112016031	3	none	none	none	20 confirm
NT_023811	AC007719	112179571	3	none	none	1 green 1 pink	15 confirm
NT_023811	AC024996	112323856	3	2 blue	1 blue	none	16 confirm
NT_023811	AC087710	112491768	3	none	none	none	0 confirm
NT_023811	AP002979	112635791	3	1 blue	1 blue	1 blue	17 confirm
NT_023811	AC104380	112692260	3	1 blue	none	none	18 confirm
NT_023811	AP003470	112752160	3	1 blue	none	none	24 confirm
NT_023811	AC009424	112844824	3	none	none	none	2 confirm
NT_023811	AC021264	112864976	3	1 blue	1 blue	none	20 confirm 1 pink
NT_023811	AC027189	112978384	3	none	none	1 green	13 confirm 5 pink
NT_023811	AC022605	113111128	3	none	none	none	7 confirm 2 pink
NT_023811	AC067903	113238845	3	1 blue	2 blue	2 blue	8 confirm 7 pink
NT_023811	AC107890	113374860	3	2 blue	1 blue	1 blue	14 confirm 5 pink
NT_023811	AC055788	113437943	2	1 blue	none	none	2 confirm
NT_023811	AC084341	113443971	1	none	none	none	16 confirm
NT_023811	AC103993	113563292	2	none	none	none	7 confirm
NT_023811	AC015866	113628090	3	none	1 blue	1 blue	14 confirm

NT_023811 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_023811	AC046175	113778653	3	none	none	none	8 confirm
NT_023811	AC046174	113864677	3	none	none	none	21 confirm
NT_023811	AC104246	114019563	3	1 blue	1 blue	1 blue	19 confirm
NT_023811	AC064802	114130648	3	none	none	none	14 confirm
NT_023811	AC025881	114309130	3	none	none	none	9 confirm
NT_023811	AC016494	114445662	3	none	1 blue	1 blue	11 confirm
NT_023811	AC025828	114515421	3	none	none	none	15 confirm
NT_023811	AC091639	114649256	3	none	none	none	13 confirm
NT_023811	AC019246	114693065	3	none	1 blue	1 blue	13 confirm
NT_023811	AC103864	114833279	3	none	none	none	3 confirm
NT_023811	AC023926	114855373	3	none	none	none	15 confirm
NT_023811	AC012238	114997379	3	none	none	none	16 confirm
NT_023811	AC025479	115120493	3	none	none	1 blue	12 confirm
NT_023811	AC068399	115211996	3	none	none	none	23 confirm
NT_023811	AC013815	115352547	2	none	none	none	4 confirm
NT_023811	AF178030	115385010	3	3 blue	1 blue	8 blue	23 confirm
NT_023811	AF130342	115688403	3	none	1 blue	none	19 confirm
NT_023811	AC103863	116005570	3	none	none	none	17 confirm
NT_023811	AF130343	116146445	3	none	1 blue	1 blue	16 confirm
NT_023811	AC090994	116298324	2	none	none	none	15 confirm
NT_023811	AC105177	116400788	3	none	none	none	23 confirm
NT_023811	AC023520	116549913	3	none	none	2 blue	23 confirm
NT_023811	AP002905	116656922	3	none	1 blue	1 blue	28 confirm
NT_023811	AC016729	116777471	1	none	1 blue	1 blue 2 green 1 red	9 confirm
NT_023811	AC104391	116862881	3	none	1 blue	3 blue	14 confirm

NT_023811 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_023811	AC027419	116990031	2	none	none	none	16 confirm	0 weak
NT_023811	AC084114	117109343	3	none	none	none	22 confirm	0 weak
NT_023811	AC026258	117331567	3	1 blue	2 blue	none	17 confirm	0 weak
NT_023811	AC024329	117443415	3	1 blue	1 blue	1 blue	20 confirm	0 weak
NT_023811	AC087361	117530650	3	none	1 blue	1 green	19 confirm	0 weak
NT_023811	AP004295	117645910	3	none	none	4 blue	15 confirm	0 weak
NT_023811	AP004291	117800506	3	none	none	none	19 confirm	0 weak
NT_023811	AP003475	117954550	3	none	none	9 blue 1 green	16 confirm	0 weak
NT_023811	AP003476	118153039	3	1 blue	1 blue	4 blue	14 confirm	0 weak
NT_023811	AP003493	118211323	3	none	none	none	12 confirm	0 weak
NT_023811	AC023590	118343021	3	none	none	none	10 confirm	0 weak
NT_023811	AP003496	118410836	3	none	none	1 blue	4 confirm	0 weak
NT_023811	AP003494	118547490	3	1 blue	2 blue	none	11 confirm	0 weak
NT_023811	AP003468	118568033	3	none	1 blue	1 blue	27 confirm	0 weak
NT_023811	AP004217	118719373	3	none	none	none	27 confirm	0 weak
NT_023811	AP004283	118855412	3	none	none	1 blue	13 confirm	0 weak
NT_023811	AC107953	118954068	3	none	none	none	14 confirm	0 weak
NT_023811	AC080033	119085475	3	none	none	3 blue	15 confirm	0 weak
NT_023811	AC009514	119266995	3	1 blue	1 blue	3 blue 1 green 1 pink	18 confirm	0 weak
NT_023811	AC090451	119319684	3	none	none	none	9 confirm	0 weak
NT_023811	AC021733	119372719	3	none	none	none	19 confirm	0 weak
NT_023811	AC099818	119489169	3	2 blue	3 blue	5 blue 1 green 1 pink 1 red	11 confirm	0 weak
NT_023811	AC107960	119578335	2	none	none	none	20 confirm	0 weak
NT_023811	AC021945	119731223	1	none	none	1 blue	8 confirm 3 blue	0 weak
NT_023811	-			2 yellow	1 yellow	10 yellow