Chromsome Reports

Chromosome 8 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_008060	NT_023779	NT_034888	NT_023744	NT_034889	NT_023736	NT_019483	NT_034992
NT_008010	NT_034890	NT_034891	NT_015280	NT_030737	NT_023704	NT_008205	NT_008300
NT_023666	NT_007988	NT_030743	NT_033197	NT_034923	NT_007995	NT_008251	NT_008045
NT_034911	NT_008176	NT_034910	NT_034921	NT_008216	NT_034892	NT_023678	NT_017431
NT_023806	NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101
NT_008050	NT_008231	NT_008183	NT_034893	NT_034894	NT_029343	NT_008218	NT_030735
NT_008166	NT_023676	NT_023821	NT_034895	NT_008209	NT_008055	NT_008186	NT_034896
NT_007972	NT_008292	NT_034897	NT_008117	NT_023717	NT_034898	NT_008007	NT_034899
NT_008059	NT_008046	NT_034900	NT_008048	NT_023811	NT_031821	NT_023663	NT_008157
NT_023726	NT_008023	NT_030744	NT_023709	NT_008150	NT_025796	NT_034912	NT_007994
NT_028251	NT_034973	NT_034970	NT_023662	NT_033193	NT_023838	NT_008104	NT_034901
NT_033185	NT_027068	NT_030032	NT_033192	NT_008127	NT_023684	NT_031818

NT_023666

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_023666	AC090197	22785200	1	none	none	2 blue	6 confirm 11 blue
NT_023666	AC104561	22960029	3	none	none	3 blue 3 green	10 confirm
NT_023666	AC051642	23097394	3	none	2 blue	14 blue 5 green 1 pink	21 confirm
NT_023666	AC012574	23271838	3	none	none	1 blue	1 confirm
NT_023666	AC012119	23340611	3	none	none	3 blue 1 green	16 confirm
NT_023666	AC091194	23489379	3	none	none	none	22 confirm
NT_023666	AC023202	23617008	1	none	none	none	20 confirm
NT_023666	AC044891	23737378	3	none	none	none	26 confirm
NT_023666	AC120193	23887293	2	none	none	1 blue	12 confirm
NT_023666	AC024958	23955657	3	none	none	none	26 confirm 1 red
NT_023666	AC018422	24146190	3	none	none	none	10 confirm
NT_023666	AC084091	24373849	3	1 blue	none	none	21 confirm
NT_023666	AF106564	24396343	3	none	2 blue	4 blue	17 confirm 3 red
NT_023666	AC105359	24533366	3	none	1 blue	5 blue	1 confirm
NT_023666	AF260013	24565336	1	none	none	none	0 confirm
NT_023666	AF176680	24571774	1	none	1 blue	5 blue	1 confirm
NT_023666	AC073581	24707805	3	1 blue	1 blue	2 blue	10 confirm
NT_023666	AC041005	24788313	3	none	none	1 blue	8 confirm
NT_023666	AC091185	24868659	3	1 blue	2 blue	6 blue	13 confirm
NT_023666	AC027630	25056179	1	none	none	none	5 confirm
NT_023666	AF263550	25213852	3	1 blue	1 blue	3 blue	11 confirm
NT_023666	AC087755	25214325	3	none	none	none	6 confirm
NT_023666	AC009623	25271648	3	none	none	1 blue	20 confirm
NT_023666	AC090103	25457920	3	none	none	1 blue	12 confirm
NT_023666	AC080043	25516300	3	none	none	none	23 confirm

NT_023666 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_023666	AC023566	25725330	3	1 blue	none	none	13 confirm	0 weak
NT_023666	AC079097	25727612	1	none	none	none	15 confirm	0 weak
NT_023666	AC022911	25887017	3	none	none	1 blue	1 confirm	0 weak
NT_023666	AC011726	25923550	1	none	1 blue	10 blue	21 confirm	0 weak
NT_023666	AC015743	26078517	3	none	none	5 blue	15 confirm	0 weak
NT_023666	AC015564	26193343	1	none	1 blue	6 blue	22 confirm	0 weak
NT_023666	AC091675	26356926	3	none	none	5 blue	15 confirm	0 weak
NT_023666	AC022839	26584159	3	1 blue	none	none	19 confirm	0 weak
NT_023666	AC067904	26617141	1	none	none	1 blue	13 confirm	0 weak
NT_023666	AC090150	26711666	1	none	none	1 blue 1 green 1 red	10 confirm 6 blue	0 weak
NT_023666	-			0 yellow	0 yellow	12 yellow