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  Chromosome 8 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_008060 NT_023779 NT_034888 NT_023744 NT_034889 NT_023736 NT_019483 NT_034992
NT_008010 NT_034890 NT_034891 NT_015280 NT_030737 NT_023704 NT_008205 NT_008300
NT_023666 NT_007988 NT_030743 NT_033197 NT_034923 NT_007995 NT_008251 NT_008045
NT_034911 NT_008176 NT_034910 NT_034921 NT_008216 NT_034892 NT_023678 NT_017431
NT_023806 NT_023679 NT_008201 NT_023727 NT_033189 NT_023795 NT_008014 NT_008101
NT_008050 NT_008231 NT_008183 NT_034893 NT_034894 NT_029343 NT_008218 NT_030735
NT_008166 NT_023676 NT_023821 NT_034895 NT_008209 NT_008055 NT_008186 NT_034896
NT_007972 NT_008292 NT_034897 NT_008117 NT_023717 NT_034898 NT_008007 NT_034899
NT_008059 NT_008046 NT_034900 NT_008048 NT_023811 NT_031821 NT_023663 NT_008157
NT_023726 NT_008023 NT_030744 NT_023709 NT_008150 NT_025796 NT_034912 NT_007994
NT_028251 NT_034973 NT_034970 NT_023662 NT_033193 NT_023838 NT_008104 NT_034901
NT_033185 NT_027068 NT_030032 NT_033192 NT_008127 NT_023684 NT_031818


  NT_015280
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_015280AC0693211244667811 blue
 1 blue
 1 blue
 7 confirm
4 green
9 pink
21 red
 0 weak
NT_015280AC068920124486331none none none 1 confirm
 0 weak
NT_015280AC090133124955682none none 2 blue
 0 confirm
4 pink
 0 weak
NT_015280AC0840851261074811 blue
 2 blue
 2 blue
2 red
 5 confirm
 0 weak
NT_015280AC0156411271028732 blue
 3 blue
 9 blue
2 green
 8 confirm
 0 weak
NT_015280AC106845127876052none none none 1 confirm
 0 weak
NT_015280AC0137491284102511 blue
 2 blue
 2 blue
 13 confirm
 0 weak
NT_015280AC0192701302693031 blue
 none 1 blue
 23 confirm
 0 weak
NT_015280AC022844130855223none none none 17 confirm
 0 weak
NT_015280AC022832131808733none none 1 blue
 14 confirm
 0 weak
NT_015280AC022880133261913none none none 19 confirm
 0 weak
NT_015280AC022690134779913none none none 20 confirm
 0 weak
NT_015280AC023538136270783none none none 19 confirm
 0 weak
NT_015280AC022039137807703none none none 16 confirm
 0 weak
NT_015280AC009898138748533none none none 12 confirm
 0 weak
NT_015280AC107965139996582none none none 4 confirm
 0 weak
NT_015280AC021760140082173none none 1 blue
 23 confirm
 0 weak
NT_015280AC040926141912753none none 1 blue
 27 confirm
 0 weak
NT_015280AC0848381445391731 blue
 1 blue
 2 blue
 27 confirm
 0 weak
NT_015280AC022666145278122none none none 0 confirm
 0 weak
NT_015280AC1068571459282421 blue
 1 blue
 none 12 confirm
 0 weak
NT_015280AC019215146661313none none none 11 confirm
 0 weak
NT_015280AC020992148587093none none none 8 confirm
 0 weak
NT_015280AC1038511501276731 blue
 none 1 blue
 10 confirm
 0 weak
NT_015280AC091559150207382none none none 23 confirm
 0 weak


  NT_015280 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_015280AC010656151743733none none none 24 confirm
 0 weak
NT_015280AC100850153134043none 1 blue
 2 blue
 10 confirm
 0 weak
NT_015280AC0192921542404731 blue
 1 blue
 6 blue
 20 confirm
 0 weak
NT_015280AC018437155391773none none none 18 confirm
 0 weak
NT_015280AC023396157015763none 1 blue
 2 blue
 18 confirm
5 blue
 0 weak
NT_015280AC087360158356582none 1 green
 1 blue
 11 confirm
6 blue
 0 weak
NT_015280AC010785159183833none none none 9 confirm
17 blue
 0 weak
NT_015280-  0 yellow
 0 yellow
 31 yellow