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  Chromosome 8 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_008060 NT_023779 NT_034888 NT_023744 NT_034889 NT_023736 NT_019483 NT_034992
NT_008010 NT_034890 NT_034891 NT_015280 NT_030737 NT_023704 NT_008205 NT_008300
NT_023666 NT_007988 NT_030743 NT_033197 NT_034923 NT_007995 NT_008251 NT_008045
NT_034911 NT_008176 NT_034910 NT_034921 NT_008216 NT_034892 NT_023678 NT_017431
NT_023806 NT_023679 NT_008201 NT_023727 NT_033189 NT_023795 NT_008014 NT_008101
NT_008050 NT_008231 NT_008183 NT_034893 NT_034894 NT_029343 NT_008218 NT_030735
NT_008166 NT_023676 NT_023821 NT_034895 NT_008209 NT_008055 NT_008186 NT_034896
NT_007972 NT_008292 NT_034897 NT_008117 NT_023717 NT_034898 NT_008007 NT_034899
NT_008059 NT_008046 NT_034900 NT_008048 NT_023811 NT_031821 NT_023663 NT_008157
NT_023726 NT_008023 NT_030744 NT_023709 NT_008150 NT_025796 NT_034912 NT_007994
NT_028251 NT_034973 NT_034970 NT_023662 NT_033193 NT_023838 NT_008104 NT_034901
NT_033185 NT_027068 NT_030032 NT_033192 NT_008127 NT_023684 NT_031818


  NT_023736
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_023736AC02152329377923none none 3 blue
1 green
 9 confirm
8 green
 0 weak
NT_023736AC08769230909241none none none 4 confirm
 0 weak
NT_023736AC02699131462073none none none 16 confirm
 0 weak
NT_023736AC087367332235431 blue
 none 1 blue
 1 confirm
 0 weak
NT_023736AC10382633313203none none none 9 confirm
 0 weak
NT_023736AC022910345890332 blue
 2 blue
 1 blue
 13 confirm
 0 weak
NT_023736AF30715935894011none none none 0 confirm
 0 weak
NT_023736AC022846361940132 blue
 2 blue
 1 blue
 9 confirm
 0 weak
NT_023736AC113147370359932 blue
 2 blue
 3 blue
 13 confirm
 0 weak
NT_023736AC08422238610403none none 1 pink
 11 confirm
 0 weak
NT_023736AC00970739632523none none none 13 confirm
 0 weak
NT_023736AC00942840110143none none none 23 confirm
 0 weak
NT_023736AC02725141463953none none none 20 confirm
 0 weak
NT_023736AC10794542564752none none none 1 confirm
 0 weak
NT_023736AC01094142674232none none none 13 confirm
 0 weak
NT_023736AC09087543334883none 1 blue
 2 blue
 18 confirm
 0 weak
NT_023736AC022068455441931 blue
 1 blue
 2 blue
1 green
1 pink
 17 confirm
 0 weak
NT_023736AC01254346888583none 1 blue
 3 blue
1 green
 19 confirm
 0 weak
NT_023736AC10378248352193none none none 7 confirm
 0 weak
NT_023736AC10599848771913none none none 8 confirm
 0 weak
NT_023736AC01917649541603none none none 18 confirm
 0 weak
NT_023736AC100856516716931 blue
 1 blue
 none 21 confirm
 0 weak
NT_023736AC00771852560403none none none 12 confirm
 0 weak
NT_023736AC09119353355003none none none 15 confirm
 0 weak
NT_023736AC00494454220943none none none 17 confirm
 0 weak


  NT_023736 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_023736AC08476855386733none none 1 blue
 9 confirm
 0 weak
NT_023736AC08736956247703none none none 21 confirm
 0 weak
NT_023736AC07905458131863none none 1 blue
 24 confirm
 0 weak
NT_023736AC00943559825093none none none 13 confirm
 0 weak
NT_023736AC01172760561642none none none 8 confirm
 0 weak
NT_023736AC107943624049932 blue
 none 1 blue
 20 confirm
 0 weak
NT_023736AC01606563182903none none 3 blue
1 green
 14 confirm
 0 weak
NT_023736AC01839864163633none none 4 blue
 19 confirm
 0 weak
NT_023736AF287957658125831 blue
 3 blue
 6 blue
7 green
1 pink
 32 confirm
1 red
 0 weak
NT_023736AF233439668641532 blue
 2 blue
 1 blue
2 pink
 22 confirm
1 pink
5 red
 0 weak
NT_023736AF238378698555231 blue
 1 blue
 2 green
1 pink
 14 confirm
8 pink
4 red
 0 weak
NT_023736AF22873070069893none none none 27 confirm
16 pink
10 red
 0 weak
NT_023736AC08412172079891none none none 24 confirm
3 blue
17 pink
3 red
 0 weak
NT_023736AF20203172673693none none none 1 confirm
2 pink
 0 weak
NT_023736AF18974572704313none none 2 blue
1 pink
 44 confirm
26 blue
15 pink
2 red
 0 weak
NT_023736AF25283074157033none none none 23 confirm
11 blue
11 pink
10 red
 0 weak
NT_023736AC10932474973683none 1 pink
 none 17 confirm
4 blue
4 pink
3 red
 0 weak
NT_023736AC09276675605673none none none 33 confirm
15 blue
14 pink
17 red
 0 weak
NT_023736-  2 yellow
 2 yellow
 14 yellow