Chromsome Reports

Chromosome 8 - Summary - Single Contig

Description of this page

Cell color code:

Color	Genetic, YAC, RH	BAC End Pairs	Clone Overlaps
White	No markers placed	All clone bridges in same contig	Best overlap with succeeding clone or no overlaps
Blue	Marker consistent with alignment of STS map	Clone bridges two adjacent contigs
Green	Marker slightly inconsistent with alignment of STS map	Clone bridges close contigs	Overlap with non-adjacent clone in same contig
Pink	Marker inconsistent with STS map, same chromosome	Mulitple clones bridge to distant contig, same chromosome	Overlap with clone on different contig, same chromosome
Red	Marker inconsistent with STS map, different chromosome	Mulitple clones bridge to contig on different chromosome	Overlap with clone on different chromosome
Yellow	Marker not placed on any accession in contig, but alignment with STS map indicates it is in contig		Overlap with clone not used in assembly

NT_008060	NT_023779	NT_034888	NT_023744	NT_034889	NT_023736	NT_019483	NT_034992
NT_008010	NT_034890	NT_034891	NT_015280	NT_030737	NT_023704	NT_008205	NT_008300
NT_023666	NT_007988	NT_030743	NT_033197	NT_034923	NT_007995	NT_008251	NT_008045
NT_034911	NT_008176	NT_034910	NT_034921	NT_008216	NT_034892	NT_023678	NT_017431
NT_023806	NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101
NT_008050	NT_008231	NT_008183	NT_034893	NT_034894	NT_029343	NT_008218	NT_030735
NT_008166	NT_023676	NT_023821	NT_034895	NT_008209	NT_008055	NT_008186	NT_034896
NT_007972	NT_008292	NT_034897	NT_008117	NT_023717	NT_034898	NT_008007	NT_034899
NT_008059	NT_008046	NT_034900	NT_008048	NT_023811	NT_031821	NT_023663	NT_008157
NT_023726	NT_008023	NT_030744	NT_023709	NT_008150	NT_025796	NT_034912	NT_007994
NT_028251	NT_034973	NT_034970	NT_023662	NT_033193	NT_023838	NT_008104	NT_034901
NT_033185	NT_027068	NT_030032	NT_033192	NT_008127	NT_023684	NT_031818

NT_008046

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_008046	AC022825	92633509	2	none	1 blue	none	8 confirm 23 blue
NT_008046	AC016885	92814324	2	1 blue 1 green	1 blue 1 green	1 blue	20 confirm 7 blue
NT_008046	AC011118	92991433	3	none	1 blue	none	19 confirm
NT_008046	AC090687	93127400	3	none	1 blue	1 blue	22 confirm
NT_008046	AC120053	93272848	2	none	none	none	6 confirm
NT_008046	AC010834	93332652	1	none	none	8 blue	11 confirm
NT_008046	AP004282	93477169	3	none	none	7 blue	7 confirm
NT_008046	AC084346	93574478	3	none	1 blue	4 blue	15 confirm
NT_008046	AC105081	93684084	3	none	none	3 blue	20 confirm
NT_008046	AP003351	93842688	3	none	none	2 blue	7 confirm
NT_008046	AP003478	93904753	3	none	4 blue	3 blue 1 green	14 confirm
NT_008046	AP003534	94032907	3	none	none	1 blue	15 confirm
NT_008046	AC023632	94192821	1	none	none	5 blue	11 confirm
NT_008046	AC108860	94327850	2	1 blue	1 blue	2 blue	10 confirm
NT_008046	AC084253	94441357	2	none	none	2 blue	4 confirm
NT_008046	AP003552	94632888	3	1 blue	1 blue	7 blue	15 confirm
NT_008046	AP003692	94654341	3	none	1 blue	5 blue	5 confirm
NT_008046	AC087752	94915858	3	1 blue	1 blue	7 blue	15 confirm
NT_008046	AC068189	95007254	3	1 blue	none	2 blue	19 confirm
NT_008046	AC018801	95015317	3	none	none	2 blue	12 confirm
NT_008046	AP003466	95110380	3	none	none	1 blue	16 confirm
NT_008046	AC024995	95210204	3	none	none	none	18 confirm
NT_008046	AC083836	95354149	2	none	none	none	7 confirm
NT_008046	AC108924	95447840	2	none	none	1 red	15 confirm
NT_008046	AC116154	95606498	3	2 blue	5 blue	3 blue	26 confirm

NT_008046 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_008046	AC068102	95735277	3	none	none	none	17 confirm
NT_008046	AC023376	95843396	1	none	none	none	8 confirm
NT_008046	AC012339	95881183	3	none	1 blue	none	31 confirm
NT_008046	AC007992	96061000	3	none	none	none	22 confirm
NT_008046	AP003465	96298170	3	1 blue	1 blue 1 red	7 blue	19 confirm
NT_008046	AP003548	96366919	3	none	1 blue	2 blue	20 confirm
NT_008046	AP003477	96538763	3	1 blue	none	6 blue 1 pink	24 confirm
NT_008046	AC010859	96713473	3	none	2 blue	1 blue	19 confirm
NT_008046	AP003112	96884282	3	none	none	3 blue	14 confirm
NT_008046	AP003111	97026337	3	none	none	none	14 confirm
NT_008046	AP003117	97130122	3	none	1 blue	3 blue	6 confirm
NT_008046	AP003115	97285254	3	1 blue	none	2 blue 1 green	7 confirm
NT_008046	AP003113	97296183	3	none	none	none	21 confirm
NT_008046	AP003116	97447706	3	none	none	none	10 confirm
NT_008046	AP002982	97508219	3	none	none	none	13 confirm
NT_008046	AP003114	97668190	3	none	none	none	1 confirm
NT_008046	AP003357	97700157	3	none	none	9 blue	10 confirm
NT_008046	AP002906	97866134	3	none	none	1 blue 1 green	13 confirm
NT_008046	AP003352	98011295	3	none	2 blue	5 blue	10 confirm
NT_008046	AP003439	98177098	3	3 blue	5 blue	7 blue	21 confirm
NT_008046	AP003438	98391397	3	1 blue	1 pink	2 blue	13 confirm
NT_008046	AP003355	98411081	3	none	1 blue	8 blue	24 confirm
NT_008046	AP002087	98545758	3	none	none	2 blue	15 confirm
NT_008046	AP003467	98625437	3	none	none	none	18 confirm
NT_008046	AP003551	98760349	3	none	none	1 blue	14 confirm

NT_008046 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_008046	AC016877	98852194	2	none	none	none	3 confirm
NT_008046	AC104986	98935739	2	1 blue	none	1 blue	11 confirm
NT_008046	AP004294	98967334	3	none	none	1 blue	19 confirm
NT_008046	AC105195	99100805	2	none	none	none	9 confirm
NT_008046	AP004290	99161701	3	none	none	1 blue	17 confirm
NT_008046	AP004289	99274901	3	none	1 blue	1 blue	26 confirm
NT_008046	AC026827	99417152	3	none	none	none	26 confirm
NT_008046	AC023933	99578208	3	none	none	none	10 confirm
NT_008046	AC018442	99678766	3	1 blue	1 blue	4 blue	17 confirm
NT_008046	AC105328	99847988	2	none	1 blue	7 blue	14 confirm
NT_008046	AC021590	99995626	3	none	none	none	11 confirm
NT_008046	AC025647	100167052	3	none	2 blue	7 blue	9 confirm
NT_008046	AP001574	100279848	3	none	1 blue	2 blue	11 confirm
NT_008046	AP003472	100414895	3	4 blue	4 blue	none	9 confirm
NT_008046	AP000424	100485715	3	none	none	7 blue 1 green	24 confirm
NT_008046	AP001205	100626675	3	none	1 blue	4 blue	27 confirm
NT_008046	AP004195	100765120	3	none	none	none	11 confirm
NT_008046	AP004293	100873954	3	none	none	2 blue	12 confirm
NT_008046	AP003689	101114753	3	1 blue	none	1 blue	18 confirm
NT_008046	AP003469	101126191	3	none	none	4 blue	12 confirm
NT_008046	AP001330	101311378	3	1 blue	none	1 blue	25 confirm
NT_008046	AP001208	101378674	3	none	none	none	13 confirm
NT_008046	AP001207	101456939	3	none	none	1 blue 1 red	21 confirm
NT_008046	AP000426	101596147	3	none	1 red	5 blue	24 confirm
NT_008046	AP001329	101794928	3	none	none	none	11 confirm

NT_008046 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends
NT_008046	AP001206	101870309	3	none	none	3 blue	17 confirm
NT_008046	AP001575	102071886	3	1 blue	none	2 blue	7 confirm
NT_008046	AP001328	102082263	3	none	none	none	17 confirm 4 pink
NT_008046	AP002907	102227797	3	none	none	8 blue	8 confirm
NT_008046	AP002981	102294178	3	none	none	4 blue	20 confirm 1 pink
NT_008046	AP002852	102450663	3	2 blue	1 blue	none	21 confirm 4 pink
NT_008046	AP002851	102697530	3	2 blue	1 blue	3 blue	12 confirm
NT_008046	AP003356	102741078	3	none	none	5 blue	5 confirm
NT_008046	AP003696	102868099	3	none	none	1 blue	1 confirm
NT_008046	AP003354	102874355	3	none	none	6 blue	12 confirm
NT_008046	AP003698	103022642	3	none	none	none	0 confirm
NT_008046	AP003550	103024375	3	none	none	4 blue 1 pink	16 confirm
NT_008046	AC025370	103164725	3	none	1 blue	6 blue	18 confirm
NT_008046	AC069351	103364783	3	1 blue	none	none	8 confirm
NT_008046	AC012213	103400173	3	none	1 blue	3 blue	11 confirm
NT_008046	AC090448	103536402	3	none	none	1 blue	7 confirm
NT_008046	AC007751	103568484	3	none	none	none	19 confirm
NT_008046	AC090686	103711298	3	none	none	none	19 confirm
NT_008046	AC025836	103869194	3	1 blue	none	none	12 confirm
NT_008046	AP001572	103951357	3	none	none	5 blue	7 confirm
NT_008046	AP004714	104019673	3	none	none	none	6 confirm
NT_008046	AP004712	104050110	3	none	none	none	5 confirm
NT_008046	AC107933	104095275	2	none	none	1 blue	2 confirm
NT_008046	AP002849	104120717	3	none	2 blue	4 blue	19 confirm
NT_008046	AP003471	104399462	3	2 blue	none	3 blue 1 green	13 confirm

NT_008046 (cont)

Contig	Acc	Start	Phs	Genetic Maps	YAC Map	RH Maps	BAC ends	Overlap
NT_008046	AP002847	104453704	3	none	none	2 blue	8 confirm	0 weak
NT_008046	AC087370	104529359	1	none	none	none	14 confirm	0 weak
NT_008046	AC012564	104738006	2	1 blue	none	1 blue	26 confirm	0 weak
NT_008046	AC021498	104875231	3	1 blue	1 blue	none	17 confirm	0 weak
NT_008046	AC090142	105107640	3	2 blue	2 blue	none	12 confirm	0 weak
NT_008046	AC021546	105135854	3	none	none	1 blue	24 confirm	0 weak
NT_008046	AC041039	105353329	3	2 blue	2 blue	1 blue	26 confirm	0 weak
NT_008046	AC022721	105405305	3	none	1 blue	1 blue	13 confirm	0 weak
NT_008046	AC018525	105502860	2	none	none	3 blue	17 confirm	0 weak
NT_008046	AC015561	105641599	1	none	none	1 blue	8 confirm	0 weak
NT_008046	AC090802	105728749	3	none	none	1 blue	17 confirm	0 weak
NT_008046	AC106856	105891297	3	none	none	none	9 confirm	0 weak
NT_008046	-			0 yellow	0 yellow	24 yellow