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  Chromosome 8 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_008060 NT_023779 NT_034888 NT_023744 NT_034889 NT_023736 NT_019483 NT_034992
NT_008010 NT_034890 NT_034891 NT_015280 NT_030737 NT_023704 NT_008205 NT_008300
NT_023666 NT_007988 NT_030743 NT_033197 NT_034923 NT_007995 NT_008251 NT_008045
NT_034911 NT_008176 NT_034910 NT_034921 NT_008216 NT_034892 NT_023678 NT_017431
NT_023806 NT_023679 NT_008201 NT_023727 NT_033189 NT_023795 NT_008014 NT_008101
NT_008050 NT_008231 NT_008183 NT_034893 NT_034894 NT_029343 NT_008218 NT_030735
NT_008166 NT_023676 NT_023821 NT_034895 NT_008209 NT_008055 NT_008186 NT_034896
NT_007972 NT_008292 NT_034897 NT_008117 NT_023717 NT_034898 NT_008007 NT_034899
NT_008059 NT_008046 NT_034900 NT_008048 NT_023811 NT_031821 NT_023663 NT_008157
NT_023726 NT_008023 NT_030744 NT_023709 NT_008150 NT_025796 NT_034912 NT_007994
NT_028251 NT_034973 NT_034970 NT_023662 NT_033193 NT_023838 NT_008104 NT_034901
NT_033185 NT_027068 NT_030032 NT_033192 NT_008127 NT_023684 NT_031818


  NT_008176
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008176AC007991391676593none none 2 blue
 9 confirm
 0 weak
NT_008176AC0875183933534811 blue
1 green
 1 green
 2 blue
 14 confirm
1 blue
 0 weak
NT_008176AC022733393416743none none 2 blue
 26 confirm
 0 weak
NT_008176AC102944395168753none none none 12 confirm
 0 weak
NT_008176AC091560396144883none none none 4 confirm
 0 weak
NT_008176AF165142396759062none none none 1 confirm
 0 weak
NT_008176AC010857396790613none none none 22 confirm
 0 weak
NT_008176AC0187963989825931 blue
 1 blue
 3 blue
 13 confirm
 0 weak
NT_008176AC1048644009400621 blue
 1 blue
 1 blue
 4 confirm
 0 weak
NT_008176AC0483874023818911 blue
 1 blue
 1 blue
 6 confirm
 0 weak
NT_008176AC087274402444063none none none 8 confirm
 0 weak
NT_008176AC1043934049383031 blue
 1 blue
 2 blue
 15 confirm
 0 weak
NT_008176AC0168684069666431 blue
 1 blue
 2 blue
 17 confirm
3 pink
 0 weak
NT_008176AC009630407546033none none 5 blue
 7 confirm
12 pink
 0 weak
NT_008176AC113133409554162none none 2 blue
 7 confirm
2 pink
 0 weak
NT_008176AC027702410112171none none 4 blue
1 pink
 14 confirm
17 pink
 0 weak
NT_008176AC090571411411042none none 2 blue
 15 confirm
4 pink
 0 weak
NT_008176AC1037244131278731 blue
1 green
 1 blue
 4 blue
 9 confirm
 0 weak
NT_008176AF271407414200651none none none 2 confirm
 0 weak
NT_008176AC107885414285842none 1 blue
 5 blue
 6 confirm
 0 weak
NT_008176AC0907394192750111 green
 1 blue
1 green
 2 blue
 7 confirm
1 green
1 pink
 0 weak
NT_008176AC093367415813731none 1 blue
 none 9 confirm
 0 weak
NT_008176AF216673416760851none none none 0 confirm
 0 weak
NT_008176AC083973417889701none 1 blue
 none 3 confirm
 0 weak
NT_008176-  1 yellow
 0 yellow
 6 yellow