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  Chromosome 8 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_008060 NT_023779 NT_034888 NT_023744 NT_034889 NT_023736 NT_019483 NT_034992
NT_008010 NT_034890 NT_034891 NT_015280 NT_030737 NT_023704 NT_008205 NT_008300
NT_023666 NT_007988 NT_030743 NT_033197 NT_034923 NT_007995 NT_008251 NT_008045
NT_034911 NT_008176 NT_034910 NT_034921 NT_008216 NT_034892 NT_023678 NT_017431
NT_023806 NT_023679 NT_008201 NT_023727 NT_033189 NT_023795 NT_008014 NT_008101
NT_008050 NT_008231 NT_008183 NT_034893 NT_034894 NT_029343 NT_008218 NT_030735
NT_008166 NT_023676 NT_023821 NT_034895 NT_008209 NT_008055 NT_008186 NT_034896
NT_007972 NT_008292 NT_034897 NT_008117 NT_023717 NT_034898 NT_008007 NT_034899
NT_008059 NT_008046 NT_034900 NT_008048 NT_023811 NT_031821 NT_023663 NT_008157
NT_023726 NT_008023 NT_030744 NT_023709 NT_008150 NT_025796 NT_034912 NT_007994
NT_028251 NT_034973 NT_034970 NT_023662 NT_033193 NT_023838 NT_008104 NT_034901
NT_033185 NT_027068 NT_030032 NT_033192 NT_008127 NT_023684 NT_031818


  NT_008251
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008251AC103840336273293none none none 7 confirm
 0 weak
NT_008251AC087671336848463none none none 14 confirm
 0 weak
NT_008251AC087855338923483none none none 1 confirm
 0 weak
NT_008251AC090993339007643none none none 17 confirm
 0 weak
NT_008251AC083963339823522none none none 4 confirm
 0 weak
NT_008251AC016412340182592none none none 35 confirm
 0 weak
NT_008251AC0902743422509331 blue
 1 blue
 1 blue
 11 confirm
 0 weak
NT_008251AC090097342367581none none none 22 confirm
 0 weak
NT_008251AC0871703439218931 blue
 none none 16 confirm
 0 weak
NT_008251AC087343344957902none none none 3 confirm
 0 weak
NT_008251AC098612345577163none none none 12 confirm
 0 weak
NT_008251AC102942346098363none none 1 blue
 9 confirm
 0 weak
NT_008251AC099685347114553none 1 blue
 1 blue
 10 confirm
 0 weak
NT_008251AC090740348824623none 1 blue
 1 blue
 12 confirm
 0 weak
NT_008251AC104049350655343none 1 blue
 none 15 confirm
 0 weak
NT_008251AC0133023512669823 blue
 1 blue
 none 13 confirm
 0 weak
NT_008251AC1052303522486021 blue
 1 blue
 none 17 confirm
 0 weak
NT_008251AC012215352941483none 1 blue
 3 blue
 26 confirm
 0 weak
NT_008251AC1008183558140332 blue
 1 blue
 none 8 confirm
 0 weak
NT_008251AP000083356416013none none none 4 confirm
 0 weak
NT_008251AP000082357006313none none none 12 confirm
 0 weak
NT_008251AP000081358006313none none none 16 confirm
 0 weak
NT_008251AP0000803594610831 red
 none none 10 confirm
 0 weak
NT_008251AP000079360006313none none none 17 confirm
 0 weak
NT_008251AP0000783611069631 blue
 1 blue
 1 blue
 12 confirm
 0 weak


  NT_008251 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008251AP000077362006313none none none 16 confirm
 0 weak
NT_008251AP000076363006313none none none 21 confirm
 0 weak
NT_008251AP000075364006313none none none 11 confirm
 0 weak
NT_008251AP000074365006313none none 1 blue
 23 confirm
 0 weak
NT_008251AP000073366006313none 1 blue
 1 blue
 13 confirm
 0 weak
NT_008251AP0000723671220331 blue
 1 blue
 1 blue
 15 confirm
 0 weak
NT_008251AP000071368006313none none none 21 confirm
 0 weak
NT_008251AP000070369006313none none none 10 confirm
 0 weak
NT_008251AP000069370006313none 1 blue
 none 12 confirm
 0 weak
NT_008251AP000068371006313none none none 9 confirm
 0 weak
NT_008251AP0000673726675931 blue
 none 1 blue
 8 confirm
 0 weak
NT_008251AP000066373006313none none 2 blue
 7 confirm
 0 weak
NT_008251AP000065374006313none 1 blue
 3 blue
4 green
8 pink
1 red
 1 confirm
5 blue
 0 weak
NT_008251-  1 yellow
 1 yellow
 5 yellow