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  Chromosome 8 - Summary - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Summary Page Whole Chromosome Single Contigs

Cell color code:

ColorGenetic, YAC, RHBAC End PairsClone Overlaps
WhiteNo markers placedAll clone bridges in same contigBest overlap with succeeding clone or no overlaps
BlueMarker consistent with alignment of STS mapClone bridges two adjacent contigs 
GreenMarker slightly inconsistent with alignment of STS mapClone bridges close contigsOverlap with non-adjacent clone in same contig
PinkMarker inconsistent with STS map, same chromosomeMulitple clones bridge to distant contig, same chromosomeOverlap with clone on different contig, same chromosome
RedMarker inconsistent with STS map, different chromosomeMulitple clones bridge to contig on different chromosomeOverlap with clone on different chromosome
YellowMarker not placed on any accession in contig, but alignment with STS map indicates it is in contig Overlap with clone not used in assembly

NT_008060 NT_023779 NT_034888 NT_023744 NT_034889 NT_023736 NT_019483 NT_034992
NT_008010 NT_034890 NT_034891 NT_015280 NT_030737 NT_023704 NT_008205 NT_008300
NT_023666 NT_007988 NT_030743 NT_033197 NT_034923 NT_007995 NT_008251 NT_008045
NT_034911 NT_008176 NT_034910 NT_034921 NT_008216 NT_034892 NT_023678 NT_017431
NT_023806 NT_023679 NT_008201 NT_023727 NT_033189 NT_023795 NT_008014 NT_008101
NT_008050 NT_008231 NT_008183 NT_034893 NT_034894 NT_029343 NT_008218 NT_030735
NT_008166 NT_023676 NT_023821 NT_034895 NT_008209 NT_008055 NT_008186 NT_034896
NT_007972 NT_008292 NT_034897 NT_008117 NT_023717 NT_034898 NT_008007 NT_034899
NT_008059 NT_008046 NT_034900 NT_008048 NT_023811 NT_031821 NT_023663 NT_008157
NT_023726 NT_008023 NT_030744 NT_023709 NT_008150 NT_025796 NT_034912 NT_007994
NT_028251 NT_034973 NT_034970 NT_023662 NT_033193 NT_023838 NT_008104 NT_034901
NT_033185 NT_027068 NT_030032 NT_033192 NT_008127 NT_023684 NT_031818


  NT_008048
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008048AP0036941062123813none none 1 green
 13 confirm
 0 weak
NT_008048AP0037901063716673none none 1 blue
1 pink
 2 confirm
 0 weak
NT_008048AP00043010638197432 blue
 3 blue
 1 blue
1 pink
 25 confirm
 0 weak
NT_008048AP0020901065183783none none none 13 confirm
 0 weak
NT_008048AC0905791066353911none none none 3 confirm
 0 weak
NT_008048AC02334410680517231 blue
 2 blue
 3 blue
 18 confirm
 0 weak
NT_008048AP0033531068434923none 1 blue
 1 blue
 17 confirm
 0 weak
NT_008048AP0037891069395013none 1 blue
 1 blue
 25 confirm
 0 weak
NT_008048AP00042810721036531 blue
 1 blue
 3 blue
 23 confirm
 0 weak
NT_008048AP0034801072626133none none none 17 confirm
 0 weak
NT_008048AC09101010736662831 blue
 none none 16 confirm
 0 weak
NT_008048AC0534791075147413none none none 1 confirm
 0 weak
NT_008048AC0255191075395633none 1 blue
 none 14 confirm
 0 weak
NT_008048AC0123461076894963none none none 17 confirm
 0 weak
NT_008048AC0255081078274913none none 1 blue
 29 confirm
 0 weak
NT_008048AP0034791079804433none 1 blue
 2 blue
 27 confirm
 0 weak
NT_008048AP0013311081165983none none 6 blue
1 red
 22 confirm
 0 weak
NT_008048AC0876201082754533none none none 11 confirm
 0 weak
NT_008048AP0020881083666083none none 3 blue
 18 confirm
 0 weak
NT_008048AC0226341085406023none none none 12 confirm
 0 weak
NT_008048AC0259621086098253none none none 23 confirm
 0 weak
NT_008048AC1042471087655793none none 3 blue
 9 confirm
 0 weak
NT_008048AC1042481088633403none none none 19 confirm
 0 weak
NT_008048AC0874351089627163none none 1 blue
 20 confirm
 0 weak
NT_008048AC1049451091211623none none none 14 confirm
 0 weak


  NT_008048 (cont)
 
ContigAccStartPhsGenetic MapsYAC MapRH MapsBAC endsOverlap
NT_008048AC0212371092189553none none 9 blue
3 pink
 22 confirm
 0 weak
NT_008048AC02100110941169631 blue
 1 blue
 1 blue
 19 confirm
 0 weak
NT_008048AP0004271095279463none 2 blue
 5 blue
 14 confirm
 0 weak
NT_008048AC0790611096197291none 1 blue
 3 blue
1 pink
 11 confirm
 0 weak
NT_008048AP0042811096898763none 1 blue
 none 17 confirm
 0 weak
NT_008048AC0232451097941023none none none 16 confirm
 0 weak
NT_008048AC0274511099152962none none none 6 confirm
 0 weak
NT_008048AC01860811002738531 blue
 1 blue
 5 blue
1 pink
 21 confirm
 0 weak
NT_008048AC0187881101602553none none none 15 confirm
 0 weak
NT_008048AC07302311039224131 blue
 none none 12 confirm
 0 weak
NT_008048AC09081911054038731 blue
 1 blue
 none 7 confirm
 0 weak
NT_008048AC0253661105910972none none none 4 confirm
 0 weak
NT_008048AP0053571106918291none 1 pink
 1 green
 3 confirm
2 blue
 0 weak
NT_008048AC0243231107156793none none 1 blue
 1 confirm
1 blue
 0 weak
NT_008048-  0 yellow
 1 yellow
 5 yellow