Chromosome 4 - Clone Overlaps

Chromosome 4 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_006051

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006051	AC116562	4008301	1	chr4	NT_006051	AC097493	4010454	3	0	0	2599	2599
S/G/Y/R/B/O	NT_006051	AC097493	4010454	3	chr4	NT_006051	AC073507	4174093	1	81016	15422	6725	103163
S/G/Y/R/B/O	NT_006051	AC073507	4174093	1	chr4	NT_006051	AC096572	4190010	1	21023	11920	2704	35647
S/G/Y/R/B/O	NT_006051	AC096572	4190010	1	chr4	NT_006051	AC022770	4269117	1	6037	0	169469	175506
S/G/Y/R/B/O	NT_006051	AC022770	4269117	1	chr4	NT_006051	AC108519	4274415	1	213649	18003	186862	418514
S/G/Y/R/B/O	NT_006051	AC022770	4269117	1			D38378	4274415	3	18844	0	9375	28219
S/G/Y/R/B/O	NT_006051	AC108519	4274415	1	chr4	NT_006051	AC073648	4422340	3	22425	0	0	22425
S/G/Y/R/B/O	NT_006051	AC073648	4422340	3	chr4	NT_006051	AC011744	4581492	3	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC011744	4581492	3	chr4	NT_006051	AC105415	4773088	3	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC011744	4581492	3	chr4	NT_006051	AC015709	4808006	1	67547	7835	1081	76463
S/G/Y/R/B/O	NT_006051	AC011744	4581492	3			AF276255	4008301	1	114587	0	3465	118052
S/G/Y/R/B/O	NT_006051	AC105415	4773088	3	chr4	NT_006051	AC015709	4808006	1	141575	10650	4019	156244
S/G/Y/R/B/O	NT_006051	AC105415	4773088	3	chr4	NT_006051	AC110814	4809642	1	29839	0	0	29839
S/G/Y/R/B/O	NT_006051	AC105415	4773088	3			AF276255	4809642	1	161266	0	7129	168395
S/G/Y/R/B/O	NT_006051	AC015709	4808006	1	chr4	NT_006051	AC110814	4809642	1	15885	2095	2036	20016
S/G/Y/R/B/O	NT_006051	AC015709	4808006	1	chr4	NT_006051	AC011744	4581492	3	67547	7835	1081	76463
S/G/Y/R/B/O	NT_006051	AC015709	4808006	1			AF276255	4809642	1	107832	8951	3982	120765
S/G/Y/R/B/O	NT_006051	AC110814	4809642	1	chr4	NT_006051	AC007332	4928430	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC110814	4809642	1	chr4	NT_006051	AC013725	4951277	3	76381	0	0	76381
S/G/Y/R/B/O	NT_006051	AC110814	4809642	1	chr4	NT_006051	AC105415	4773088	3	29839	0	0	29839
S/G/Y/R/B/O	NT_006051	AC110814	4809642	1			AF276255	4773088	1	21244	0	2020	23264
S/G/Y/R/B/O	NT_006051	AC007332	4928430	1	chr4	NT_006051	AC114775	4933793	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC007332	4928430	1	chr4	NT_006051	AC092437	5337536	3	113725	7932	28983	150640
S/G/Y/R/B/O	NT_006051	AC007332	4928430	1	chr4	NT_006051	AC114754	5168274	1	45937	0	2356	48293
S/G/Y/R/B/O	NT_006051	AC114775	4933793	1	chr4	NT_006051	AC013725	4951277	3	53928	0	0	53928
S/G/Y/R/B/O	NT_006051	AC114775	4933793	1	chr4	NT_006051	AC041016	5163874	1	20990	7189	5575	33754
S/G/Y/R/B/O	NT_006051	AC114775	4933793	1	chr4	NT_006051	AC109359	5117325	1	20278	3627	119901	143806
S/G/Y/R/B/O	NT_006051	AC114775	4933793	1			AC025073	4951277	1	49509	6681	6748	62938
S/G/Y/R/B/O	NT_006051	AC013725	4951277	3	chr4	NT_006051	AC109359	5117325	1	40374	0	0	40374
S/G/Y/R/B/O	NT_006051	AC013725	4951277	3	chr4	NT_006051	AC041016	5163874	1	28704	0	1436	30140
S/G/Y/R/B/O	NT_006051	AC013725	4951277	3	chr4	NT_006051	AC110814	4809642	1	76381	0	0	76381
S/G/Y/R/B/O	NT_006051	AC013725	4951277	3			AC025073	5168274	1	13367	4762	6402	24531
S/G/Y/R/B/O	NT_006051	AC109359	5117325	1	chr4	NT_006051	AC041016	5163874	1	145947	9234	2721	157902
S/G/Y/R/B/O	NT_006051	AC109359	5117325	1	chr4	NT_006051	AC092437	5337536	3	12470	0	0	12470
S/G/Y/R/B/O	NT_006051	AC109359	5117325	1	chr4	NT_006051	AC114754	5168274	1	100082	0	0	100082
S/G/Y/R/B/O	NT_006051	AC109359	5117325	1	chr4	NT_006051	AC114775	4933793	1	20278	3627	119901	143806
S/G/Y/R/B/O	NT_006051	AC109359	5117325	1			AC025073	4951277	1	119436	9886	18749	148071
S/G/Y/R/B/O	NT_006051	AC041016	5163874	1	chr4	NT_006051	AC114754	5168274	1	57507	2368	1287	61162
S/G/Y/R/B/O	NT_006051	AC041016	5163874	1	chr4	NT_006051	AC013725	4951277	3	28704	0	1436	30140
S/G/Y/R/B/O	NT_006051	AC041016	5163874	1	chr4	NT_006051	AC092437	5337536	3	10246	0	0	10246
S/G/Y/R/B/O	NT_006051	AC041016	5163874	1	chr4	NT_006051	AC114775	4933793	1	20990	7189	5575	33754
S/G/Y/R/B/O	NT_006051	AC041016	5163874	1			AC025073	4951277	1	20891	2746	4077	27714
S/G/Y/R/B/O	NT_006051	AC114754	5168274	1	chr4	NT_006051	AC092437	5337536	3	89883	0	0	89883
S/G/Y/R/B/O	NT_006051	AC114754	5168274	1	chr4	NT_006051	AC007332	4928430	1	45937	0	2356	48293
S/G/Y/R/B/O	NT_006051	AC114754	5168274	1	chr4	NT_006051	AC109359	5117325	1	100082	0	0	100082
S/G/Y/R/B/O	NT_006051	AC114754	5168274	1			AC025073	4928430	1	60055	9080	10588	79723
S/G/Y/R/B/O	NT_006051	AC092437	5337536	3	chr4	NT_006051	AC108139	5430527	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC092437	5337536	3	chr4	NT_006051	AC007332	4928430	1	113725	7932	28983	150640
S/G/Y/R/B/O	NT_006051	AC092437	5337536	3	chr4	NT_006051	AC041016	5163874	1	10246	0	0	10246
S/G/Y/R/B/O	NT_006051	AC092437	5337536	3	chr4	NT_006051	AC109359	5117325	1	12470	0	0	12470
S/G/Y/R/B/O	NT_006051	AC092437	5337536	3			AC025073	4928430	1	10551	2413	0	12964
S/G/Y/R/B/O	NT_006051	AC108139	5430527	1	chr4	NT_006051	AC107395	5619843	1	53448	0	0	53448
S/G/Y/R/B/O	NT_006051	AC108139	5430527	1			AC096740	106824495	3	110072	0	0	110072
S/G/Y/R/B/O	NT_006051	AC107395	5619843	1	chr4	NT_006051	AC092665	5717065	3	34773	0	0	34773
S/G/Y/R/B/O	NT_006051	AC107395	5619843	1			AC096740	5717065	3	139952	0	0	139952
S/G/Y/R/B/O	NT_006051	AC092665	5717065	3	chr4	NT_006051	AC004664	5855569	3	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC004664	5855569	3	chr4	NT_006051	AC008130	6025666	1	16230	0	9183	25413
S/G/Y/R/B/O	NT_006051	AC004664	5855569	3	chr4	NT_006051	AC114738	6025952	1	87268	0	0	87268
S/G/Y/R/B/O	NT_006051	AC004664	5855569	3			AC004661	5619843	1	114868	6961	5993	127822
S/G/Y/R/B/O	NT_006051	AC008130	6025666	1	chr4	NT_006051	AC114738	6025952	1	104573	3969	16004	124546
S/G/Y/R/B/O	NT_006051	AC008130	6025666	1	chr4	NT_006051	AC022529	6632172	1	34410	0	9521	43931
S/G/Y/R/B/O	NT_006051	AC008130	6025666	1			AC004661	6025952	1	11408	0	9143	20551
S/G/Y/R/B/O	NT_006051	AC114738	6025952	1	chr4	NT_006051	AC097382	6067900	3	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC114738	6025952	1	chr4	NT_006051	AC004664	5855569	3	87268	0	0	87268
S/G/Y/R/B/O	NT_006051	AC114738	6025952	1			AC004661	6025952	1	29257	6104	2638	37999
S/G/Y/R/B/O	NT_006051	AC097382	6067900	3	chr4	NT_006051	AC092463	6216742	1	40693	0	0	40693
S/G/Y/R/B/O	NT_006051	AC097382	6067900	3			AC004394	6025666	1	51014	4436	13209	68659
S/G/Y/R/B/O	NT_006051	AC097382	6067900	3			AC004524	6025666	1	18164	0	4393	22557
S/G/Y/R/B/O	NT_006051	AC097382	6067900	3			AC004555	6025666	1	40680	0	0	40680
S/G/Y/R/B/O	NT_006051	AC097382	6067900	3			AC004579	6025666	1	64567	4670	1398	70635
S/G/Y/R/B/O	NT_006051	AC092463	6216742	1	chr4	NT_006051	AC092442	6287993	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC092463	6216742	1	chr4	NT_033064	AC106045	7649051	1	54137	0	0	54137
S/G/Y/R/B/O	NT_006051	AC092463	6216742	1			AC004524	6216742	1	66750	6604	7283	80637
S/G/Y/R/B/O	NT_006051	AC092463	6216742	1			AC004555	6216742	1	74210	0	30005	104215
S/G/Y/R/B/O	NT_006051	AC092463	6216742	1			AC004604	6216742	1	20304	4719	7939	32962
S/G/Y/R/B/O	NT_006051	AC092442	6287993	1	chr4	NT_006051	AC093508	6400629	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC092442	6287993	1			AC004618	7649051	1	57056	2454	25990	85500
S/G/Y/R/B/O	NT_006051	AC092442	6287993	1			AC004624	7649051	1	156240	0	0	156240
S/G/Y/R/B/O	NT_006051	AC092442	6287993	1			AC004670	7649051	1	52667	5585	40567	98819
S/G/Y/R/B/O	NT_006051	AC092442	6287993	1			AC005141	7649051	1	61219	6026	1183	68428
S/G/Y/R/B/O	NT_006051	AC093508	6400629	1	chr4	NT_006051	AC109593	6573382	3	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC093508	6400629	1	chr4	NT_033064	AC106045	7649051	1	30508	0	0	30508
S/G/Y/R/B/O	NT_006051	AC093508	6400629	1			AC004524	7649051	1	24357	2381	5315	32053
S/G/Y/R/B/O	NT_006051	AC093508	6400629	1			AC004555	7649051	1	22563	0	69695	92258
S/G/Y/R/B/O	NT_006051	AC093508	6400629	1			AC004604	7649051	1	27153	4723	6612	38488
S/G/Y/R/B/O	NT_006051	AC109593	6573382	3	chr4	NT_006051	AC105915	6582608	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC109593	6573382	3			AC004624	7649051	1	11206	0	0	11206
S/G/Y/R/B/O	NT_006051	AC109593	6573382	3			AC005141	7649051	1	11201	0	0	11201
S/G/Y/R/B/O	NT_006051	AC105915	6582608	1	chr4	NT_006051	AC022529	6632172	1	71848	8828	49091	129767
S/G/Y/R/B/O	NT_006051	AC105915	6582608	1			AC004795	7649051	1	15053	8041	1392	24486
S/G/Y/R/B/O	NT_006051	AC105915	6582608	1			AC005141	7649051	1	54208	1934	1120	57262
S/G/Y/R/B/O	NT_006051	AC105915	6582608	1			AC005289	7649051	1	86777	0	31505	118282
S/G/Y/R/B/O	NT_006051	AC022529	6632172	1	chr4	NT_006051	AC113615	6906037	1	0	0	0	0
S/G/Y/R/B/O	NT_006051	AC022529	6632172	1	chr4	NT_006051	AC008130	6025666	1	34410	0	9521	43931
S/G/Y/R/B/O	NT_006051	AC022529	6632172	1			AC004795	6632172	1	12407	5813	0	18220
S/G/Y/R/B/O	NT_006051	AC022529	6632172	1			AC005141	6632172	1	21022	5360	10104	36486
S/G/Y/R/B/O	NT_006051	AC022529	6632172	1			AC005289	6632172	1	46715	0	17054	63769
S/G/Y/R/B/O	NT_006051	AC113615	6906037	1	chr4	NT_006051	AC116317	7014381	1	26362	2879	9866	39107
S/G/Y/R/B/O	NT_006051	AC113615	6906037	1			AC004618	6582608	1	43472	0	10735	54207
S/G/Y/R/B/O	NT_006051	AC113615	6906037	1			AC004670	6582608	1	40924	2407	0	43331
S/G/Y/R/B/O	NT_006051	AC113615	6906037	1			AC004689	6582608	1	26241	0	0	26241
S/G/Y/R/B/O	NT_006051	AC113615	6906037	1			AC079794	6582608	1	114976	8411	2603	125990
S/G/Y/R/B/O	NT_006051	AC116317	7014381	1
S/G/Y/R/B/O	NT_006051	AC116317	7014381	1			AC004599	7014381	1	75939	5074	54329	135342
S/G/Y/R/B/O	NT_006051	AC116317	7014381	1			AC004689	7014381	1	80505	5074	73626	159205
S/G/Y/R/B/O	NT_006051	AC116317	7014381	1			AC079794	7014381	1	27033	4326	3810	35169