|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_022753 | AC026219 | 133012153 | 1 | chr4 | NT_022753 | AC025520 | 133036714 | 1 | 5134 | 6683 | 27650 | 39467 |
| S/G/Y/R/B/O |
NT_022753 | AC026219 | 133012153 | 1 | chr4 | NT_022753 | AC096898 | 133051097 | 3 | 14790 | 9391 | 20844 | 45025 |
| S/G/Y/R/B/O |
NT_022753 | AC026219 | 133012153 | 1 | chr4 | NT_022753 | AC108062 | 133211923 | 3 | 11707 | 2421 | 57915 | 72043 |
| S/G/Y/R/B/O |
NT_022753 | AC026219 | 133012153 | 1 |   |   | AC034197 | 133036714 | 1 | 15370 | 10625 | 33952 | 59947 |
| S/G/Y/R/B/O |
NT_022753 | AC026219 | 133012153 | 1 |   |   | AC069265 | 133036714 | 1 | 14791 | 9392 | 25471 | 49654 |
| S/G/Y/R/B/O |
NT_022753 | AC025520 | 133036714 | 1 | chr4 | NT_022753 | AC096898 | 133051097 | 3 | 93908 | 14053 | 15544 | 123505 |
| S/G/Y/R/B/O |
NT_022753 | AC025520 | 133036714 | 1 | chr4 | NT_022753 | AC108062 | 133211923 | 3 | 29379 | 0 | 1658 | 31037 |
| S/G/Y/R/B/O |
NT_022753 | AC025520 | 133036714 | 1 |   |   | AC034197 | 133012153 | 1 | 44674 | 2698 | 1657 | 49029 |
| S/G/Y/R/B/O |
NT_022753 | AC025520 | 133036714 | 1 |   |   | AC069265 | 133012153 | 1 | 87002 | 12460 | 19612 | 119074 |
| S/G/Y/R/B/O |
NT_022753 | AC096898 | 133051097 | 3 | chr4 | NT_022753 | AC108062 | 133211923 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022753 | AC096898 | 133051097 | 3 | chr4 | NT_022753 | AC026219 | 133012153 | 1 | 14790 | 9391 | 20844 | 45025 |
| S/G/Y/R/B/O |
NT_022753 | AC096898 | 133051097 | 3 |   |   | AC034197 | 133012153 | 1 | 78843 | 0 | 5929 | 84772 |
| S/G/Y/R/B/O |
NT_022753 | AC096898 | 133051097 | 3 |   |   | AC069265 | 133012153 | 1 | 158584 | 1873 | 0 | 160457 |
| S/G/Y/R/B/O |
NT_022753 | AC108062 | 133211923 | 3 | chr4 | NT_022753 | AC026192 | 133379520 | 1 | 2869 | 0 | 0 | 2869 |
| S/G/Y/R/B/O |
NT_022753 | AC108062 | 133211923 | 3 | chr4 | NT_022753 | AC025520 | 133036714 | 1 | 29379 | 0 | 1658 | 31037 |
| S/G/Y/R/B/O |
NT_022753 | AC108062 | 133211923 | 3 | chr4 | NT_022753 | AC026219 | 133012153 | 1 | 11707 | 2421 | 57915 | 72043 |
| S/G/Y/R/B/O |
NT_022753 | AC108062 | 133211923 | 3 |   |   | AC024911 | 133012153 | 1 | 47140 | 19952 | 8863 | 75955 |
| S/G/Y/R/B/O |
NT_022753 | AC108062 | 133211923 | 3 |   |   | AC034197 | 133012153 | 1 | 60352 | 0 | 1071 | 61423 |
| S/G/Y/R/B/O |
NT_022753 | AC026192 | 133379520 | 1 | chr4 | NT_022753 | AC078850 | 133420447 | 3 | 98227 | 0 | 19980 | 118207 |
| S/G/Y/R/B/O |
NT_022753 | AC026192 | 133379520 | 1 |   |   | AC024944 | 133012153 | 1 | 75095 | 0 | 6662 | 81757 |
| S/G/Y/R/B/O |
NT_022753 | AC026192 | 133379520 | 1 |   |   | AC110609 | 133211923 | 3 | 44907 | 0 | 0 | 44907 |
| S/G/Y/R/B/O |
NT_022753 | AC078850 | 133420447 | 3 | chr4 | NT_022753 | AC108024 | 133600641 | 1 | 37182 | 0 | 9194 | 46376 |
| S/G/Y/R/B/O |
NT_022753 | AC078850 | 133420447 | 3 |   |   | AC024944 | 133211923 | 1 | 36494 | 0 | 0 | 36494 |
| S/G/Y/R/B/O |
NT_022753 | AC108024 | 133600641 | 1 | chr4 | NT_022753 | AC021420 | 133637733 | 1 | 138992 | 2588 | 590 | 142170 |
| S/G/Y/R/B/O |
NT_022753 | AC108024 | 133600641 | 1 | chr4 | NT_022753 | AC093783 | 133716498 | 3 | 31542 | 0 | 0 | 31542 |
| S/G/Y/R/B/O |
NT_022753 | AC021420 | 133637733 | 1 | chr4 | NT_022753 | AC093783 | 133716498 | 3 | 42210 | 0 | 21602 | 63812 |
| S/G/Y/R/B/O |
NT_022753 | AC093783 | 133716498 | 3 | chr4 | NT_022753 | AC093826 | 133838207 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_022753 | AC093783 | 133716498 | 3 | chr4 | NT_022753 | AC108024 | 133600641 | 1 | 31542 | 0 | 0 | 31542 |
| S/G/Y/R/B/O |
NT_022753 | AC093826 | 133838207 | 3 | chr4 | NT_022753 | AC105417 | 134010484 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022753 | AC093826 | 133838207 | 3 |   |   | AC027132 | 133600641 | 1 | 66204 | 3761 | 3445 | 73410 |
| S/G/Y/R/B/O |
NT_022753 | AC093826 | 133838207 | 3 |   |   | AC060779 | 133600641 | 1 | 48254 | 0 | 0 | 48254 |
| S/G/Y/R/B/O |
NT_022753 | AC093826 | 133838207 | 3 |   |   | AL162593 | 133716498 | 1 | 36336 | 14386 | 4855 | 55577 |
| S/G/Y/R/B/O |
NT_022753 | AC093826 | 133838207 | 3 |   |   | AL353686 | 133716498 | 1 | 96904 | 0 | 0 | 96904 |
| S/G/Y/R/B/O |
NT_022753 | AC105417 | 134010484 | 3 | chr4 | NT_022753 | AC082650 | 134084478 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022753 | AC105417 | 134010484 | 3 |   |   | AC027132 | 133716498 | 1 | 55661 | 5286 | 11726 | 72673 |
| S/G/Y/R/B/O |
NT_022753 | AC105417 | 134010484 | 3 |   |   | AC060779 | 133716498 | 1 | 56617 | 3146 | 0 | 59763 |
| S/G/Y/R/B/O |
NT_022753 | AC105417 | 134010484 | 3 |   |   | AL162593 | 133716498 | 1 | 41751 | 9124 | 0 | 50875 |
| S/G/Y/R/B/O |
NT_022753 | AC105417 | 134010484 | 3 |   |   | AL353686 | 133716498 | 1 | 69397 | 0 | 0 | 69397 |
| S/G/Y/R/B/O |
NT_022753 | AC082650 | 134084478 | 3 | chr4 | NT_022753 | AC011619 | 134251886 | 1 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC082650 | 134084478 | 3 |   |   | AC060779 | 134251886 | 1 | 31954 | 0 | 0 | 31954 |
| S/G/Y/R/B/O |
NT_022753 | AC011619 | 134251886 | 1 | chr4 | NT_022753 | AC095048 | 134310485 | 3 | 67611 | 0 | 25762 | 93373 |
| S/G/Y/R/B/O |
NT_022753 | AC011619 | 134251886 | 1 |   |   | AC016407 | 134251886 | 1 | 109953 | 4427 | 12697 | 127077 |
| S/G/Y/R/B/O |
NT_022753 | AC095048 | 134310485 | 3 | chr4 | NT_022753 | AC096755 | 134434146 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022753 | AC095048 | 134310485 | 3 |   |   | AC016407 | 134251886 | 1 | 76776 | 0 | 15603 | 92379 |
| S/G/Y/R/B/O |
NT_022753 | AC096755 | 134434146 | 3 | chr4 | NT_022753 | AC079857 | 134614588 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_022753 | AC096755 | 134434146 | 3 |   |   | AC087307 | 134614588 | 1 | 62730 | 0 | 23485 | 86215 |
| S/G/Y/R/B/O |
NT_022753 | AC079857 | 134614588 | 3 | chr4 | NT_022753 | AC092486 | 134798807 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_022753 | AC079857 | 134614588 | 3 |   |   | AC087307 | 134614588 | 1 | 74097 | 0 | 12072 | 86169 |
| S/G/Y/R/B/O |
NT_022753 | AC092486 | 134798807 | 3 | chr4 | NT_022753 | AC097481 | 134813488 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_022753 | AC097481 | 134813488 | 3 | chr4 | NT_022753 | AC093882 | 134915054 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC093882 | 134915054 | 3 | chr4 | NT_022753 | AC114784 | 135085400 | 1 | 107943 | 0 | 1422 | 109365 |
| S/G/Y/R/B/O |
NT_022753 | AC093882 | 134915054 | 3 |   |   | AC112243 | 134813488 | 1 | 107899 | 0 | 0 | 107899 |
| S/G/Y/R/B/O |
NT_022753 | AC114784 | 135085400 | 1 | chr4 | NT_022753 | AC096575 | 135131091 | 3 | 12229 | 0 | 0 | 12229 |
| S/G/Y/R/B/O |
NT_022753 | AC114784 | 135085400 | 1 |   |   | AC112243 | 126006007 | 1 | 166028 | 0 | 0 | 166028 |
| S/G/Y/R/B/O |
NT_022753 | AC096575 | 135131091 | 3 | chr4 | NT_022753 | AC092540 | 135311514 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC096575 | 135131091 | 3 |   |   | AC112243 | 135311514 | 1 | 12229 | 0 | 0 | 12229 |
| S/G/Y/R/B/O |
NT_022753 | AC092540 | 135311514 | 3 | chr4 | NT_022753 | AC109820 | 135443315 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC092540 | 135311514 | 3 |   |   | AC021352 | 135085400 | 1 | 95962 | 10230 | 0 | 106192 |
| S/G/Y/R/B/O |
NT_022753 | AC092540 | 135311514 | 3 |   |   | AC022055 | 135085400 | 1 | 106742 | 1892 | 1300 | 109934 |
| S/G/Y/R/B/O |
NT_022753 | AC109820 | 135443315 | 3 | chr4 | NT_022753 | AC096731 | 135486491 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC109820 | 135443315 | 3 |   |   | AC021352 | 135443315 | 1 | 41113 | 0 | 0 | 41113 |
| S/G/Y/R/B/O |
NT_022753 | AC109820 | 135443315 | 3 |   |   | AC022055 | 135443315 | 1 | 37200 | 3556 | 0 | 40756 |
| S/G/Y/R/B/O |
NT_022753 | AC096731 | 135486491 | 3 | chr4 | NT_022753 | AC093831 | 135575694 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_022753 | AC093831 | 135575694 | 3 | chr4 | NT_022753 | AC093902 | 135755810 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC093902 | 135755810 | 3 | chr4 | NT_022753 | AC025554 | 135933401 | 1 | 38990 | 0 | 0 | 38990 |
| S/G/Y/R/B/O |
NT_022753 | AC025554 | 135933401 | 1 | chr4 | NT_022753 | AC021203 | 136083880 | 3 | 75312 | 0 | 0 | 75312 |
| S/G/Y/R/B/O |
NT_022753 | AC021203 | 136083880 | 3 | chr4 | NT_022753 | AC110803 | 136160513 | 1 | 50550 | 5843 | 2378 | 58771 |
| S/G/Y/R/B/O |
NT_022753 | AC110803 | 136160513 | 1 | chr4 | NT_022753 | AC034176 | 136183152 | 3 | 69588 | 1868 | 21456 | 92912 |
| S/G/Y/R/B/O |
NT_022753 | AC034176 | 136183152 | 3 | chr4 | NT_022753 | AC105392 | 136376252 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_022753 | AC105392 | 136376252 | 3 | chr4 | NT_022753 | AC105424 | 136398275 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_022753 | AC105424 | 136398275 | 3 | chr4 | NT_022753 | AC107393 | 136580674 | 1 | 31968 | 0 | 0 | 31968 |
| S/G/Y/R/B/O |
NT_022753 | AC105424 | 136398275 | 3 | chr4 | NT_022753 | AC051647 | 136588398 | 1 | 17851 | 0 | 0 | 17851 |
| S/G/Y/R/B/O |
NT_022753 | AC105424 | 136398275 | 3 |   |   | AC026537 | 136398275 | 1 | 157906 | 0 | 12963 | 170869 |
| S/G/Y/R/B/O |
NT_022753 | AC107393 | 136580674 | 1 | chr4 | NT_022753 | AC051647 | 136588398 | 1 | 113519 | 4190 | 24460 | 142169 |
| S/G/Y/R/B/O |
NT_022753 | AC107393 | 136580674 | 1 | chr4 | NT_022753 | AC024672 | 136717757 | 1 | 62059 | 21432 | 11260 | 94751 |
| S/G/Y/R/B/O |
NT_022753 | AC107393 | 136580674 | 1 | chr4 | NT_022753 | AC104821 | 136729871 | 3 | 39975 | 0 | 0 | 39975 |
| S/G/Y/R/B/O |
NT_022753 | AC107393 | 136580674 | 1 |   |   | AC026537 | 158446675 | 1 | 16553 | 0 | 0 | 16553 |
| S/G/Y/R/B/O |
NT_022753 | AC107393 | 136580674 | 1 |   |   | AC032021 | 158446675 | 1 | 40080 | 0 | 0 | 40080 |
| S/G/Y/R/B/O |
NT_022753 | AC107393 | 136580674 | 1 |   |   | AC044886 | 158446675 | 1 | 35253 | 1984 | 0 | 37237 |
| S/G/Y/R/B/O |
NT_022753 | AC051647 | 136588398 | 1 | chr4 | NT_022753 | AC024672 | 136717757 | 1 | 20764 | 19136 | 11179 | 51079 |
| S/G/Y/R/B/O |
NT_022753 | AC051647 | 136588398 | 1 | chr4 | NT_022753 | AC104821 | 136729871 | 3 | 26597 | 0 | 0 | 26597 |
| S/G/Y/R/B/O |
NT_022753 | AC051647 | 136588398 | 1 | chr4 | NT_022753 | AC105424 | 136398275 | 3 | 17851 | 0 | 0 | 17851 |
| S/G/Y/R/B/O |
NT_022753 | AC051647 | 136588398 | 1 |   |   | AC026537 | 136717757 | 1 | 14727 | 0 | 0 | 14727 |
| S/G/Y/R/B/O |
NT_022753 | AC051647 | 136588398 | 1 |   |   | AC044886 | 136717757 | 1 | 14311 | 1984 | 0 | 16295 |
| S/G/Y/R/B/O |
NT_022753 | AC024672 | 136717757 | 1 | chr4 | NT_022753 | AC104821 | 136729871 | 3 | 51601 | 4443 | 23254 | 79298 |
| S/G/Y/R/B/O |
NT_022753 | AC024672 | 136717757 | 1 | chr4 | NT_022753 | AC107393 | 136580674 | 1 | 62059 | 21432 | 11260 | 94751 |
| S/G/Y/R/B/O |
NT_022753 | AC024672 | 136717757 | 1 |   |   | AC032021 | 136580674 | 1 | 43641 | 17078 | 18534 | 79253 |
| S/G/Y/R/B/O |
NT_022753 | AC024672 | 136717757 | 1 |   |   | AC044886 | 136580674 | 1 | 22416 | 7598 | 16328 | 46342 |
| S/G/Y/R/B/O |
NT_022753 | AC104821 | 136729871 | 3 | chr4 | NT_022753 | AC096711 | 136823750 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022753 | AC104821 | 136729871 | 3 | chr4 | NT_022753 | AC051647 | 136588398 | 1 | 26597 | 0 | 0 | 26597 |
| S/G/Y/R/B/O |
NT_022753 | AC104821 | 136729871 | 3 | chr4 | NT_022753 | AC107393 | 136580674 | 1 | 39975 | 0 | 0 | 39975 |
| S/G/Y/R/B/O |
NT_022753 | AC104821 | 136729871 | 3 |   |   | AC032021 | 136717757 | 1 | 78363 | 0 | 1412 | 79775 |
| S/G/Y/R/B/O |
NT_022753 | AC104821 | 136729871 | 3 |   |   | AC044886 | 136717757 | 1 | 60151 | 1986 | 1448 | 63585 |
| S/G/Y/R/B/O |
NT_022753 | AC096711 | 136823750 | 3 | chr4 | NT_022753 | AC093916 | 136962787 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022753 | AC096711 | 136823750 | 3 |   |   | AC032021 | 136717757 | 1 | 48648 | 0 | 0 | 48648 |
| S/G/Y/R/B/O |
NT_022753 | AC096711 | 136823750 | 3 |   |   | AC044886 | 136717757 | 1 | 53933 | 13735 | 2634 | 70302 |
| S/G/Y/R/B/O |
NT_022753 | AC093916 | 136962787 | 3 | chr4 | NT_022753 | AC098866 | 137123419 | 3 | 0 | 1992 | 0 | 1992 |
| S/G/Y/R/B/O |
NT_022753 | AC098866 | 137123419 | 3 |   |   |   |   |   |   |   |   |   |
| |
|
|
|