Chromosome 4 - Clone Overlaps

Chromosome 4 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_006081

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z54334	2660988	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	AC084195	2791782	1	54432	2650	15456	72538
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	AL158132	2881496	3	12961	0	142	13103
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	AP000780	3003297	1	28538	9617	6593	44748
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z54072	2818528	3	17028	9325	1285	27638
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z68162	2792913	3	19621	0	0	19621
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z68277	2716835	3	25139	0	0	25139
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z68279	2858626	3	13239	6525	1356	21120
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z68870	2750240	3	22878	0	2486	25364
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1	chr4	NT_006081	Z74617	2899832	3	15722	0	0	15722
S/G/Y/R/B/O	NT_006081	AC055890	2659506	1			AL158133	2881496	3	18029	2979	0	21008
S/G/Y/R/B/O	NT_006081	Z54334	2660988	3	chr4	NT_006081	Z69922	2692917	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z69922	2692917	3	chr4	NT_006081	Z68277	2716835	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68277	2716835	3	chr4	NT_006081	AL110117	2748455	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68277	2716835	3	chr4	NT_006081	AC055890	2659506	1	25139	0	0	25139
S/G/Y/R/B/O	NT_006081	Z68277	2716835	3	chr4	NT_006081	AC084195	2791782	1	31609	0	0	31609
S/G/Y/R/B/O	NT_006081	AL110117	2748455	3	chr4	NT_006081	Z68870	2750240	3	0	0	104	104
S/G/Y/R/B/O	NT_006081	Z68870	2750240	3	chr4	NT_006081	Z68757	2785609	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68870	2750240	3	chr4	NT_006081	AC055890	2659506	1	22878	0	2486	25364
S/G/Y/R/B/O	NT_006081	Z68870	2750240	3	chr4	NT_006081	AC084195	2791782	1	27598	1825	3356	32779
S/G/Y/R/B/O	NT_006081	Z68757	2785609	3	chr4	NT_006081	AC084195	2791782	1	0	0	0	0
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	Z68494	2792221	3	0	0	692	692
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	AC055890	2659506	1	54432	2650	15456	72538
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	AL158132	2881496	3	13575	1807	0	15382
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	AP000780	3003297	1	40004	5393	20071	65468
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	Z68162	2792913	3	10265	1221	10783	22269
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	Z68277	2716835	3	31609	0	0	31609
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	Z68870	2750240	3	27598	1825	3356	32779
S/G/Y/R/B/O	NT_006081	AC084195	2791782	1	chr4	NT_006081	Z74617	2899832	3	19087	0	0	19087
S/G/Y/R/B/O	NT_006081	Z68494	2792221	3	chr4	NT_006081	Z68162	2792913	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68162	2792913	3	chr4	NT_006081	Z54072	2818528	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68162	2792913	3	chr4	NT_006081	AC055890	2659506	1	19621	0	0	19621
S/G/Y/R/B/O	NT_006081	Z68162	2792913	3	chr4	NT_006081	AC084195	2791782	1	10265	1221	10783	22269
S/G/Y/R/B/O	NT_006081	Z54072	2818528	3	chr4	NT_006081	Z68279	2858626	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z54072	2818528	3	chr4	NT_006081	AC055890	2659506	1	17028	9325	1285	27638
S/G/Y/R/B/O	NT_006081	Z54072	2818528	3	chr4	NT_006081	AP000780	3003297	1	15069	2735	12811	30615
S/G/Y/R/B/O	NT_006081	Z54072	2818528	3			AL158133	2791782	3	25186	0	0	25186
S/G/Y/R/B/O	NT_006081	Z68279	2858626	3	chr4	NT_006081	AL158132	2881496	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68279	2858626	3	chr4	NT_006081	AC055890	2659506	1	13239	6525	1356	21120
S/G/Y/R/B/O	NT_006081	Z68279	2858626	3	chr4	NT_006081	AP000780	3003297	1	10621	0	8385	19006
S/G/Y/R/B/O	NT_006081	AL158132	2881496	3	chr4	NT_006081	Z74617	2899832	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	AL158132	2881496	3	chr4	NT_006081	AC055890	2659506	1	12961	0	142	13103
S/G/Y/R/B/O	NT_006081	AL158132	2881496	3	chr4	NT_006081	AC084195	2791782	1	13575	1807	0	15382
S/G/Y/R/B/O	NT_006081	Z74617	2899832	3	chr4	NT_006081	AL158131	2936111	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z74617	2899832	3	chr4	NT_006081	AC055890	2659506	1	15722	0	0	15722
S/G/Y/R/B/O	NT_006081	Z74617	2899832	3	chr4	NT_006081	AC084195	2791782	1	19087	0	0	19087
S/G/Y/R/B/O	NT_006081	Z74617	2899832	3			AP001878	3003297	1	22756	0	0	22756
S/G/Y/R/B/O	NT_006081	AL158131	2936111	3	chr4	NT_006081	Z68280	2936251	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68280	2936251	3	chr4	NT_006081	Z69709	2979730	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68280	2936251	3			AP001878	3421636	1	23669	0	0	23669
S/G/Y/R/B/O	NT_006081	Z69709	2979730	3	chr4	NT_006081	AC091441	3003060	1	7868	2521	6932	17321
S/G/Y/R/B/O	NT_006081	Z69709	2979730	3			AL390065	3003060	1	23418	0	0	23418
S/G/Y/R/B/O	NT_006081	AC091441	3003060	1	chr4	NT_006081	AP000780	3003297	1	0	0	0	0
S/G/Y/R/B/O	NT_006081	AC091441	3003060	1	chr4	NT_006081	AC005516	3137618	3	26483	0	3251	29734
S/G/Y/R/B/O	NT_006081	AC091441	3003060	1	chr4	NT_006081	AL390059	3421636	1	26518	0	3251	29769
S/G/Y/R/B/O	NT_006081	AC091441	3003060	1	chr4	NT_006081	Z68192	3073461	3	18747	0	0	18747
S/G/Y/R/B/O	NT_006081	AC091441	3003060	1	chr4	NT_006081	Z68756	3097126	3	15507	0	5139	20646
S/G/Y/R/B/O	NT_006081	AC091441	3003060	1			AL390065	3421636	1	76099	11329	30780	118208
S/G/Y/R/B/O	NT_006081	AP000780	3003297	1	chr4	NT_006081	Z69387	3008996	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	AP000780	3003297	1	chr4	NT_006081	AC055890	2659506	1	28538	9617	6593	44748
S/G/Y/R/B/O	NT_006081	AP000780	3003297	1	chr4	NT_006081	AC084195	2791782	1	40004	5393	20071	65468
S/G/Y/R/B/O	NT_006081	AP000780	3003297	1	chr4	NT_006081	Z54072	2818528	3	15069	2735	12811	30615
S/G/Y/R/B/O	NT_006081	AP000780	3003297	1	chr4	NT_006081	Z68279	2858626	3	10621	0	8385	19006
S/G/Y/R/B/O	NT_006081	Z69387	3008996	3	chr4	NT_006081	Z69366	3013620	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z69366	3013620	3	chr4	NT_006081	Z69365	3021989	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z69365	3021989	3	chr4	NT_006081	Z68273	3033433	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z69365	3021989	3			AL390065	3003060	1	11436	0	0	11436
S/G/Y/R/B/O	NT_006081	Z69365	3021989	3			Z69364	3003060	3	11444	0	0	11444
S/G/Y/R/B/O	NT_006081	Z68273	3033433	3	chr4	NT_006081	Z68281	3062432	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68273	3033433	3			AL390065	3003060	1	28932	0	0	28932
S/G/Y/R/B/O	NT_006081	Z68281	3062432	3	chr4	NT_006081	Z68192	3073461	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68192	3073461	3	chr4	NT_006081	Z68756	3097126	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z68192	3073461	3	chr4	NT_006081	AC091441	3003060	1	18747	0	0	18747
S/G/Y/R/B/O	NT_006081	Z68192	3073461	3			AL390065	3003060	1	23675	0	0	23675
S/G/Y/R/B/O	NT_006081	Z68756	3097126	3	chr4	NT_006081	AC005516	3137618	3	17500	0	0	17500
S/G/Y/R/B/O	NT_006081	Z68756	3097126	3	chr4	NT_006081	AC091441	3003060	1	15507	0	5139	20646
S/G/Y/R/B/O	NT_006081	Z68756	3097126	3	chr4	NT_006081	AL390059	3421636	1	17463	0	0	17463
S/G/Y/R/B/O	NT_006081	Z68756	3097126	3			AL390065	3421636	1	27546	0	0	27546
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3	chr4	NT_006081	Z54246	3320451	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3	chr4	NT_006081	AC091441	3003060	1	26483	0	3251	29734
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3	chr4	NT_006081	AL390059	3421636	1	200111	0	0	200111
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3	chr4	NT_006081	AL645949	3417671	1	20952	0	0	20952
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			AL390065	3421636	1	79397	0	0	79397
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z49154	3417671	3	32530	0	0	32530
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z49155	3417671	3	27312	0	0	27312
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z49208	3417671	3	22979	0	0	22979
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z49769	3417671	3	34186	0	0	34186
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z69649	3097126	3	12203	0	0	12203
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z69650	3097126	3	16811	0	0	16811
S/G/Y/R/B/O	NT_006081	AC005516	3137618	3			Z69837	3097126	3	36790	0	0	36790
S/G/Y/R/B/O	NT_006081	Z54246	3320451	3	chr4	NT_006081	Z68275	3345505	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	Z54246	3320451	3	chr4	NT_006081	AL645949	3417671	1	28203	2238	4880	35321
S/G/Y/R/B/O	NT_006081	Z68275	3345505	3	chr4	NT_006081	AL096838	3358677	3	0	0	5056	5056
S/G/Y/R/B/O	NT_006081	AL096838	3358677	3	chr4	NT_006081	Z69084	3415940	3	0	0	0	0
S/G/Y/R/B/O	NT_006081	AL096838	3358677	3	chr4	NT_006081	AL645949	3417671	1	56654	0	3013	59667
S/G/Y/R/B/O	NT_006081	AL096838	3358677	3			AL117391	3417671	3	62493	0	0	62493
S/G/Y/R/B/O	NT_006081	AL096838	3358677	3			Z68274	3417671	3	20578	0	0	20578
S/G/Y/R/B/O	NT_006081	AL096838	3358677	3			Z68885	3345505	3	16984	0	0	16984
S/G/Y/R/B/O	NT_006081	AL096838	3358677	3			Z68886	3345505	3	10574	0	0	10574
S/G/Y/R/B/O	NT_006081	Z69084	3415940	3	chr4	NT_006081	AL645949	3417671	1	0	1827	0	1827
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1	chr4	NT_006081	AL390059	3421636	1	20950	0	1761	22711
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1	chr4	NT_006081	AC005516	3137618	3	20952	0	0	20952
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1	chr4	NT_033075	AC074370	3645893	1	17414	0	0	17414
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1	chr4	NT_006081	AL096838	3358677	3	56654	0	3013	59667
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1	chr4	NT_033075	AL121796	3518303	1	12505	0	0	12505
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1	chr4	NT_006081	Z54246	3320451	3	28203	2238	4880	35321
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1			AL117391	3358677	3	56632	0	3013	59645
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1			Z68885	3345505	3	16971	0	0	16971
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1			Z68886	3345505	3	10573	0	0	10573
S/G/Y/R/B/O	NT_006081	AL645949	3417671	1			Z69837	3630738	3	33754	0	0	33754
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1	chr4	NT_006081	AC005516	3137618	3	200111	0	0	200111
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1	chr4	NT_006081	AC091441	3003060	1	26518	0	3251	29769
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1	chr4	NT_006081	Z68756	3097126	3	17463	0	0	17463
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			AL390065	3003060	1	63380	0	0	63380
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z49154	3417671	3	32522	0	0	32522
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z49155	3417671	3	27275	0	0	27275
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z49208	3417671	3	22977	0	0	22977
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z49769	3417671	3	34169	0	0	34169
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z69649	3097126	3	12201	0	0	12201
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z69650	3097126	3	16680	0	0	16680
S/G/Y/R/B/O	NT_006081	AL390059	3421636	1			Z69837	3097126	3	36777	0	0	36777