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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_022865 | AC016773 | 1633021 | 3 | chr4 | NT_022865 | AC105448 | 1822244 | 1 | 79911 | 0 | 0 | 79911 |
| S/G/Y/R/B/O |
NT_022865 | AC016773 | 1633021 | 3 |   |   | M63005 | 1822244 | 3 | 34320 | 0 | 0 | 34320 |
| S/G/Y/R/B/O |
NT_022865 | AC016773 | 1633021 | 3 |   |   | M63480 | 1822244 | 3 | 40210 | 0 | 0 | 40210 |
| S/G/Y/R/B/O |
NT_022865 | AC016773 | 1633021 | 3 |   |   | M63543 | 1822244 | 3 | 40043 | 0 | 0 | 40043 |
| S/G/Y/R/B/O |
NT_022865 | AC016773 | 1633021 | 3 |   |   | M63544 | 1822244 | 3 | 58751 | 0 | 0 | 58751 |
| S/G/Y/R/B/O |
NT_022865 | AC105448 | 1822244 | 1 | chr4 | NT_022865 | Z69651 | 1881303 | 3 | 7079 | 0 | 0 | 7079 |
| S/G/Y/R/B/O |
NT_022865 | AC105448 | 1822244 | 1 | chr4 | NT_022865 | AL132868 | 2062816 | 1 | 74615 | 0 | 0 | 74615 |
| S/G/Y/R/B/O |
NT_022865 | AC105448 | 1822244 | 1 | chr4 | NT_022865 | Z49236 | 1888412 | 3 | 28126 | 0 | 0 | 28126 |
| S/G/Y/R/B/O |
NT_022865 | AC105448 | 1822244 | 1 | chr4 | NT_022865 | Z68276 | 1916448 | 3 | 29706 | 0 | 0 | 29706 |
| S/G/Y/R/B/O |
NT_022865 | AC105448 | 1822244 | 1 |   |   | AL136360 | 2062816 | 1 | 44872 | 0 | 0 | 44872 |
| S/G/Y/R/B/O |
NT_022865 | AC105448 | 1822244 | 1 |   |   | Z69652 | 1881303 | 3 | 13817 | 0 | 0 | 13817 |
| S/G/Y/R/B/O |
NT_022865 | Z69651 | 1881303 | 3 | chr4 | NT_022865 | Z49236 | 1888412 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49236 | 1888412 | 3 | chr4 | NT_022865 | Z68276 | 1916448 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49236 | 1888412 | 3 | chr4 | NT_022865 | AC105448 | 1822244 | 1 | 28126 | 0 | 0 | 28126 |
| S/G/Y/R/B/O |
NT_022865 | Z49236 | 1888412 | 3 | chr4 | NT_022865 | AL132868 | 2062816 | 1 | 28120 | 0 | 0 | 28120 |
| S/G/Y/R/B/O |
NT_022865 | Z68276 | 1916448 | 3 | chr4 | NT_022865 | Z68164 | 1946096 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68276 | 1916448 | 3 | chr4 | NT_022865 | AC105448 | 1822244 | 1 | 29706 | 0 | 0 | 29706 |
| S/G/Y/R/B/O |
NT_022865 | Z68276 | 1916448 | 3 | chr4 | NT_022865 | AL132868 | 2062816 | 1 | 29727 | 0 | 0 | 29727 |
| S/G/Y/R/B/O |
NT_022865 | Z68164 | 1946096 | 3 | chr4 | NT_022865 | Z68165 | 1986144 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68164 | 1946096 | 3 | chr4 | NT_022865 | AL132868 | 2062816 | 1 | 40130 | 0 | 0 | 40130 |
| S/G/Y/R/B/O |
NT_022865 | Z68165 | 1986144 | 3 | chr4 | NT_022865 | Z49237 | 2021325 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68165 | 1986144 | 3 | chr4 | NT_022865 | AL132868 | 2062816 | 1 | 35170 | 0 | 0 | 35170 |
| S/G/Y/R/B/O |
NT_022865 | Z68165 | 1986144 | 3 |   |   | AL136360 | 2062816 | 1 | 35181 | 0 | 0 | 35181 |
| S/G/Y/R/B/O |
NT_022865 | Z49237 | 2021325 | 3 | chr4 | NT_022865 | Z79579 | 2060549 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49237 | 2021325 | 3 |   |   | AL136360 | 2062816 | 1 | 11377 | 0 | 0 | 11377 |
| S/G/Y/R/B/O |
NT_022865 | Z79579 | 2060549 | 3 | chr4 | NT_022865 | Z69375 | 2061075 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z69375 | 2061075 | 3 | chr4 | NT_022865 | AL132868 | 2062816 | 1 | 0 | 0 | 1794 | 1794 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 | chr4 | NT_022865 | Z69638 | 2071788 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 | chr4 | NT_022865 | AC105448 | 1822244 | 1 | 74615 | 0 | 0 | 74615 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 | chr4 | NT_022865 | Z49236 | 1888412 | 3 | 28120 | 0 | 0 | 28120 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 | chr4 | NT_022865 | Z68164 | 1946096 | 3 | 40130 | 0 | 0 | 40130 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 | chr4 | NT_022865 | Z68165 | 1986144 | 3 | 35170 | 0 | 0 | 35170 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 | chr4 | NT_022865 | Z68276 | 1916448 | 3 | 29727 | 0 | 0 | 29727 |
| S/G/Y/R/B/O |
NT_022865 | AL132868 | 2062816 | 1 |   |   | AL136360 | 1822244 | 1 | 72973 | 0 | 3980 | 76953 |
| S/G/Y/R/B/O |
NT_022865 | Z69638 | 2071788 | 3 | chr4 | NT_022865 | Z49862 | 2099762 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49862 | 2099762 | 3 | chr4 | NT_022865 | Z67997 | 2127804 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_022865 | Z49862 | 2099762 | 3 |   |   | AL136360 | 2060549 | 1 | 26927 | 0 | 0 | 26927 |
| S/G/Y/R/B/O |
NT_022865 | Z67997 | 2127804 | 3 | chr4 | NT_022865 | Z68226 | 2146772 | 3 | 12681 | 0 | 0 | 12681 |
| S/G/Y/R/B/O |
NT_022865 | Z67997 | 2127804 | 3 |   |   | AL136360 | 2127804 | 1 | 14461 | 0 | 0 | 14461 |
| S/G/Y/R/B/O |
NT_022865 | Z68226 | 2146772 | 3 | chr4 | NT_022865 | Z70278 | 2175659 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68226 | 2146772 | 3 |   |   | AL136360 | 2146772 | 1 | 20422 | 2413 | 5245 | 28080 |
| S/G/Y/R/B/O |
NT_022865 | Z70278 | 2175659 | 3 | chr4 | NT_022865 | Z49235 | 2176258 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49235 | 2176258 | 3 | chr4 | NT_022865 | Z49918 | 2212001 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49235 | 2176258 | 3 | chr4 | NT_022865 | AL158068 | 2311637 | 1 | 35833 | 0 | 0 | 35833 |
| S/G/Y/R/B/O |
NT_022865 | Z49235 | 2176258 | 3 |   |   | AL136360 | 2311637 | 1 | 35824 | 0 | 0 | 35824 |
| S/G/Y/R/B/O |
NT_022865 | Z49918 | 2212001 | 3 | chr4 | NT_022865 | Z49250 | 2242011 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49918 | 2212001 | 3 | chr4 | NT_022865 | AL158068 | 2311637 | 1 | 30106 | 0 | 0 | 30106 |
| S/G/Y/R/B/O |
NT_022865 | Z49918 | 2212001 | 3 |   |   | AL136360 | 2311637 | 1 | 30105 | 0 | 0 | 30105 |
| S/G/Y/R/B/O |
NT_022865 | Z49250 | 2242011 | 3 | chr4 | NT_022865 | Z68282 | 2264588 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z49250 | 2242011 | 3 | chr4 | NT_022865 | AL158068 | 2311637 | 1 | 22675 | 0 | 0 | 22675 |
| S/G/Y/R/B/O |
NT_022865 | Z49250 | 2242011 | 3 |   |   | AL136360 | 2311637 | 1 | 22675 | 0 | 0 | 22675 |
| S/G/Y/R/B/O |
NT_022865 | Z68282 | 2264588 | 3 | chr4 | NT_022865 | Z54146 | 2292186 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68282 | 2264588 | 3 | chr4 | NT_022865 | AL158068 | 2311637 | 1 | 29836 | 0 | 0 | 29836 |
| S/G/Y/R/B/O |
NT_022865 | Z54146 | 2292186 | 3 | chr4 | NT_022865 | AL158068 | 2311637 | 1 | 20105 | 0 | 0 | 20105 |
| S/G/Y/R/B/O |
NT_022865 | Z54146 | 2292186 | 3 |   |   | AL136360 | 2311637 | 1 | 20115 | 0 | 0 | 20115 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 | chr4 | NT_022865 | Z54147 | 2311642 | 3 | 19840 | 0 | 0 | 19840 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 | chr4 | NT_022865 | Z49235 | 2176258 | 3 | 35833 | 0 | 0 | 35833 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 | chr4 | NT_022865 | Z49250 | 2242011 | 3 | 22675 | 0 | 0 | 22675 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 | chr4 | NT_022865 | Z49918 | 2212001 | 3 | 30106 | 0 | 0 | 30106 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 | chr4 | NT_022865 | Z68163 | 2331573 | 3 | 24681 | 0 | 0 | 24681 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 | chr4 | NT_022865 | Z68282 | 2264588 | 3 | 29836 | 0 | 0 | 29836 |
| S/G/Y/R/B/O |
NT_022865 | AL158068 | 2311637 | 1 |   |   | AL136360 | 2311637 | 1 | 144466 | 0 | 0 | 144466 |
| S/G/Y/R/B/O |
NT_022865 | Z54147 | 2311642 | 3 | chr4 | NT_022865 | Z68163 | 2331573 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z54147 | 2311642 | 3 |   |   | AL136360 | 2175659 | 1 | 11269 | 0 | 0 | 11269 |
| S/G/Y/R/B/O |
NT_022865 | Z68163 | 2331573 | 3 | chr4 | NT_022865 | Z68269 | 2356194 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68163 | 2331573 | 3 | chr4 | NT_022865 | AL158068 | 2311637 | 1 | 24681 | 0 | 0 | 24681 |
| S/G/Y/R/B/O |
NT_022865 | Z68269 | 2356194 | 3 | chr4 | NT_022865 | AL645924 | 2385044 | 1 | 27074 | 0 | 0 | 27074 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 | chr4 | NT_022865 | Z54336 | 2389806 | 3 | 36884 | 0 | 0 | 36884 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 | chr4 | NT_022865 | AC073988 | 2535302 | 1 | 44631 | 2400 | 47849 | 94880 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 | chr4 | NT_022865 | AL359379 | 2552785 | 1 | 71227 | 0 | 0 | 71227 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 | chr4 | NT_022865 | Z68284 | 2466161 | 3 | 37512 | 0 | 0 | 37512 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 | chr4 | NT_022865 | Z68321 | 2511219 | 3 | 17387 | 0 | 0 | 17387 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 | chr4 | NT_022865 | Z68869 | 2426959 | 3 | 27692 | 0 | 0 | 27692 |
| S/G/Y/R/B/O |
NT_022865 | AL645924 | 2385044 | 1 |   |   | Z68755 | 2503856 | 3 | 13069 | 0 | 0 | 13069 |
| S/G/Y/R/B/O |
NT_022865 | Z54336 | 2389806 | 3 | chr4 | NT_022865 | Z68869 | 2426959 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68869 | 2426959 | 3 | chr4 | NT_022865 | Z68284 | 2466161 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68869 | 2426959 | 3 | chr4 | NT_022865 | AC073988 | 2535302 | 1 | 20699 | 0 | 4384 | 25083 |
| S/G/Y/R/B/O |
NT_022865 | Z68869 | 2426959 | 3 | chr4 | NT_022865 | AL645924 | 2385044 | 1 | 27692 | 0 | 0 | 27692 |
| S/G/Y/R/B/O |
NT_022865 | Z68284 | 2466161 | 3 | chr4 | NT_022865 | Z68322 | 2503856 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68284 | 2466161 | 3 | chr4 | NT_022865 | AL359379 | 2552785 | 1 | 37513 | 0 | 0 | 37513 |
| S/G/Y/R/B/O |
NT_022865 | Z68284 | 2466161 | 3 | chr4 | NT_022865 | AL645924 | 2385044 | 1 | 37512 | 0 | 0 | 37512 |
| S/G/Y/R/B/O |
NT_022865 | Z68322 | 2503856 | 3 | chr4 | NT_022865 | Z68321 | 2511219 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68321 | 2511219 | 3 | chr4 | NT_022865 | Z69921 | 2532380 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z68321 | 2511219 | 3 | chr4 | NT_022865 | AC073988 | 2535302 | 1 | 10184 | 1813 | 0 | 11997 |
| S/G/Y/R/B/O |
NT_022865 | Z68321 | 2511219 | 3 | chr4 | NT_022865 | AL359379 | 2552785 | 1 | 19045 | 0 | 0 | 19045 |
| S/G/Y/R/B/O |
NT_022865 | Z68321 | 2511219 | 3 | chr4 | NT_022865 | AL645924 | 2385044 | 1 | 17387 | 0 | 0 | 17387 |
| S/G/Y/R/B/O |
NT_022865 | Z69921 | 2532380 | 3 | chr4 | NT_022865 | AC073988 | 2535302 | 1 | 0 | 2596 | 0 | 2596 |
| S/G/Y/R/B/O |
NT_022865 | AC073988 | 2535302 | 1 | chr4 | NT_022865 | Z69919 | 2541729 | 3 | 0 | 0 | 2335 | 2335 |
| S/G/Y/R/B/O |
NT_022865 | AC073988 | 2535302 | 1 | chr4 | NT_022865 | AL359379 | 2552785 | 1 | 19227 | 2401 | 42030 | 63658 |
| S/G/Y/R/B/O |
NT_022865 | AC073988 | 2535302 | 1 | chr4 | NT_022865 | AL645924 | 2385044 | 1 | 44631 | 2400 | 47849 | 94880 |
| S/G/Y/R/B/O |
NT_022865 | AC073988 | 2535302 | 1 | chr4 | NT_022865 | Z68321 | 2511219 | 3 | 10184 | 1813 | 0 | 11997 |
| S/G/Y/R/B/O |
NT_022865 | AC073988 | 2535302 | 1 | chr4 | NT_022865 | Z68869 | 2426959 | 3 | 20699 | 0 | 4384 | 25083 |
| S/G/Y/R/B/O |
NT_022865 | Z69919 | 2541729 | 3 | chr4 | NT_022865 | Z69918 | 2548023 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z69918 | 2548023 | 3 | chr4 | NT_022865 | Z69920 | 2548477 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | Z69920 | 2548477 | 3 | chr4 | NT_022865 | AL359379 | 2552785 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | AL359379 | 2552785 | 1 | chr4 | NT_022865 | Z69917 | 2584129 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022865 | AL359379 | 2552785 | 1 | chr4 | NT_022865 | AC073988 | 2535302 | 1 | 19227 | 2401 | 42030 | 63658 |
| S/G/Y/R/B/O |
NT_022865 | AL359379 | 2552785 | 1 | chr4 | NT_022865 | AL645924 | 2385044 | 1 | 71227 | 0 | 0 | 71227 |
| S/G/Y/R/B/O |
NT_022865 | AL359379 | 2552785 | 1 | chr4 | NT_022865 | Z68284 | 2466161 | 3 | 37513 | 0 | 0 | 37513 |
| S/G/Y/R/B/O |
NT_022865 | AL359379 | 2552785 | 1 | chr4 | NT_022865 | Z68321 | 2511219 | 3 | 19045 | 0 | 0 | 19045 |
| S/G/Y/R/B/O |
NT_022865 | Z69917 | 2584129 | 3 |   |   |   |   |   |   |   |   |   |
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