Chromosome 4 - Clone Overlaps

Chromosome 4 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_016354

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_016354	AC068474	120523090	1	chr4	NT_016354	AC105758	120528559	1	153470	1632	13347	168449
S/G/Y/R/B/O	NT_016354	AC068474	120523090	1	chr4	NT_016354	AC023119	120537405	3	45881	0	14895	60776
S/G/Y/R/B/O	NT_016354	AC105758	120528559	1	chr4	NT_016354	AC023119	120537405	3	64699	0	0	64699
S/G/Y/R/B/O	NT_016354	AC023119	120537405	3	chr4	NT_016354	AC093896	120721526	3	0	556	0	556
S/G/Y/R/B/O	NT_016354	AC023119	120537405	3	chr4	NT_016354	AC068474	120523090	1	45881	0	14895	60776
S/G/Y/R/B/O	NT_016354	AC093896	120721526	3	chr4	NT_016354	AC096760	120877146	3	0	1996	0	1996
S/G/Y/R/B/O	NT_016354	AC096760	120877146	3	chr4	NT_016354	AC097528	120974657	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC097528	120974657	3	chr4	NT_016354	AC104087	121143069	3	0	1999	0	1999
S/G/Y/R/B/O	NT_016354	AC104087	121143069	3	chr4	NT_016354	AC092659	121151310	3	0	1996	0	1996
S/G/Y/R/B/O	NT_016354	AC092659	121151310	3	chr4	NT_016354	AC097378	121309833	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC092659	121151310	3			AC079067	120974657	1	41582	0	0	41582
S/G/Y/R/B/O	NT_016354	AC092659	121151310	3			AC114742	121143069	1	43416	0	0	43416
S/G/Y/R/B/O	NT_016354	AC097378	121309833	3	chr4	NT_016354	AC096773	121467250	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC097378	121309833	3			AC079067	121143069	1	95876	6409	3391	105676
S/G/Y/R/B/O	NT_016354	AC097378	121309833	3			AC114742	121467250	1	110556	0	0	110556
S/G/Y/R/B/O	NT_016354	AC096773	121467250	3	chr4	NT_016354	AC093772	121601653	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC093772	121601653	3	chr4	NT_016354	AC015773	121775143	1	105705	0	1031	106736
S/G/Y/R/B/O	NT_016354	AC093772	121601653	3	chr4	NT_016354	AC015822	121785593	1	17788	2042	0	19830
S/G/Y/R/B/O	NT_016354	AC015773	121775143	1	chr4	NT_016354	AC015822	121785593	1	42249	0	1031	43280
S/G/Y/R/B/O	NT_016354	AC015773	121775143	1	chr4	NT_016354	AC108148	121785754	1	29918	0	0	29918
S/G/Y/R/B/O	NT_016354	AC015822	121785593	1	chr4	NT_016354	AC108148	121785754	1	103474	2033	0	105507
S/G/Y/R/B/O	NT_016354	AC015822	121785593	1	chr4	NT_016354	AC093772	121601653	3	17788	2042	0	19830
S/G/Y/R/B/O	NT_016354	AC015822	121785593	1	chr4	NT_016354	AC105387	121892949	3	15907	0	0	15907
S/G/Y/R/B/O	NT_016354	AC108148	121785754	1	chr4	NT_016354	AC105387	121892949	3	28017	0	0	28017
S/G/Y/R/B/O	NT_016354	AC108148	121785754	1	chr4	NT_016354	AC015773	121775143	1	29918	0	0	29918
S/G/Y/R/B/O	NT_016354	AC108148	121785754	1	chr4	NT_016354	AC097462	121920997	3	61977	0	0	61977
S/G/Y/R/B/O	NT_016354	AC105387	121892949	3	chr4	NT_016354	AC097462	121920997	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC105387	121892949	3	chr4	NT_016354	AC015822	121785593	1	15907	0	0	15907
S/G/Y/R/B/O	NT_016354	AC097462	121920997	3	chr4	NT_016354	AC110797	122099970	1	97079	0	0	97079
S/G/Y/R/B/O	NT_016354	AC097462	121920997	3	chr4	NT_016354	AC108148	121785754	1	61977	0	0	61977
S/G/Y/R/B/O	NT_016354	AC110797	122099970	1	chr4	NT_016354	AC093591	122128166	3	48991	0	0	48991
S/G/Y/R/B/O	NT_016354	AC110797	122099970	1			AC021286	122099970	1	43969	1642	18464	64075
S/G/Y/R/B/O	NT_016354	AC093591	122128166	3	chr4	NT_016354	AC107053	122286924	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC093591	122128166	3			AC021286	121920997	1	144279	0	0	144279
S/G/Y/R/B/O	NT_016354	AC093591	122128166	3			AL591646	122099970	1	81509	0	0	81509
S/G/Y/R/B/O	NT_016354	AC107053	122286924	3	chr4	NT_016354	AC099340	122341981	1	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC107053	122286924	3			AL591646	122099970	1	44612	0	12241	56853
S/G/Y/R/B/O	NT_016354	AC099340	122341981	1	chr4	NT_016354	AC108045	122440914	1	105350	0	1065	106415
S/G/Y/R/B/O	NT_016354	AC099340	122341981	1	chr4	NT_016354	AC114735	122506331	1	23479	0	0	23479
S/G/Y/R/B/O	NT_016354	AC099340	122341981	1			AL591646	122506331	1	18505	0	0	18505
S/G/Y/R/B/O	NT_016354	AC108045	122440914	1	chr4	NT_016354	AC114735	122506331	1	72729	0	0	72729
S/G/Y/R/B/O	NT_016354	AC114735	122506331	1	chr4	NT_016354	AC104664	122717944	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC114735	122506331	1	chr4	NT_016354	AC099340	122341981	1	23479	0	0	23479
S/G/Y/R/B/O	NT_016354	AC104664	122717944	3	chr4	NT_016354	AC105919	122872543	1	3534	0	0	3534
S/G/Y/R/B/O	NT_016354	AC105919	122872543	1	chr4	NT_016354	AC093589	123009807	3	30885	0	0	30885
S/G/Y/R/B/O	NT_016354	AC105919	122872543	1			AC010825	122872543	1	30885	0	0	30885
S/G/Y/R/B/O	NT_016354	AC093589	123009807	3	chr4	NT_016354	AC092629	123135570	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC093589	123009807	3			AC010825	122717944	1	127551	0	0	127551
S/G/Y/R/B/O	NT_016354	AC092629	123135570	3	chr4	NT_016354	AC098865	123282243	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC092629	123135570	3			AC010825	122872543	1	28780	0	0	28780
S/G/Y/R/B/O	NT_016354	AC098865	123282243	3	chr4	NT_016354	AC079835	123334591	3	0	1999	0	1999
S/G/Y/R/B/O	NT_016354	AC079835	123334591	3	chr4	NT_016354	AC108152	123499638	1	0	562	0	562
S/G/Y/R/B/O	NT_016354	AC108152	123499638	1	chr4	NT_016354	AC079856	123505914	3	0	0	1672	1672
S/G/Y/R/B/O	NT_016354	AC079856	123505914	3	chr4	NT_016354	AC093825	123659254	3	0	1995	0	1995
S/G/Y/R/B/O	NT_016354	AC093825	123659254	3	chr4	NT_016354	AC097472	123806645	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC093825	123659254	3			AC023143	123499638	1	58414	3610	6305	68329
S/G/Y/R/B/O	NT_016354	AC097472	123806645	3	chr4	NT_016354	AC105421	123951121	3	0	1996	0	1996
S/G/Y/R/B/O	NT_016354	AC097472	123806645	3			AC023143	123505914	1	49587	1716	60521	111824
S/G/Y/R/B/O	NT_016354	AC105421	123951121	3	chr4	NT_016354	AC110618	124111913	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC105421	123951121	3			AC025534	123951121	1	93574	2910	18055	114539
S/G/Y/R/B/O	NT_016354	AC110618	124111913	3	chr4	NT_016354	AC097474	124184009	3	0	1980	0	1980
S/G/Y/R/B/O	NT_016354	AC110618	124111913	3			AC025534	124111913	1	10586	0	30719	41305
S/G/Y/R/B/O	NT_016354	AC097474	124184009	3	chr4	NT_016354	AC021007	124340577	1	81079	0	1147	82226
S/G/Y/R/B/O	NT_016354	AC097474	124184009	3	chr4	NT_016354	AC072025	124349666	1	24454	0	14510	38964
S/G/Y/R/B/O	NT_016354	AC021007	124340577	1	chr4	NT_016354	AC068694	124340816	1	53319	0	0	53319
S/G/Y/R/B/O	NT_016354	AC021007	124340577	1	chr4	NT_016354	AC072025	124349666	1	71832	2197	23417	97446
S/G/Y/R/B/O	NT_016354	AC068694	124340816	1	chr4	NT_016354	AC072025	124349666	1	64092	8429	4488	77009
S/G/Y/R/B/O	NT_016354	AC068694	124340816	1	chr4	NT_016354	AC009616	126290545	1	53753	4739	2784	61276
S/G/Y/R/B/O	NT_016354	AC068694	124340816	1	chr4	NT_016354	AC012655	126299791	1	51659	0	2791	54450
S/G/Y/R/B/O	NT_016354	AC072025	124349666	1	chr4	NT_016354	AC108166	124382427	1	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC072025	124349666	1	chr4	NT_016354	AC009616	126290545	1	12276	2760	3487	18523
S/G/Y/R/B/O	NT_016354	AC072025	124349666	1	chr4	NT_016354	AC012655	126299791	1	19921	2760	7538	30219
S/G/Y/R/B/O	NT_016354	AC072025	124349666	1	chr4	NT_016354	AC021007	124340577	1	71832	2197	23417	97446
S/G/Y/R/B/O	NT_016354	AC072025	124349666	1	chr4	NT_016354	AC097474	124184009	3	24454	0	14510	38964
S/G/Y/R/B/O	NT_016354	AC108166	124382427	1	chr4	NT_016354	AC022489	124383790	3	23452	0	0	23452
S/G/Y/R/B/O	NT_016354	AC108166	124382427	1	chr4	NT_016354	AC053545	124665550	3	87819	0	0	87819
S/G/Y/R/B/O	NT_016354	AC022489	124383790	3	chr4	NT_016354	AC053545	124665550	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC053545	124665550	3	chr4	NT_016354	AC093691	124854477	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC053545	124665550	3	chr4	NT_016354	AC108166	124382427	1	87819	0	0	87819
S/G/Y/R/B/O	NT_016354	AC053545	124665550	3			AC018425	124382427	1	70097	0	6476	76573
S/G/Y/R/B/O	NT_016354	AC093691	124854477	3	chr4	NT_016354	AC021205	124902531	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC093691	124854477	3			AC018425	124382427	1	45600	2726	0	48326
S/G/Y/R/B/O	NT_016354	AC021205	124902531	3	chr4	NT_016354	AC109357	125079448	1	42979	0	0	42979
S/G/Y/R/B/O	NT_016354	AC021205	124902531	3			AC018425	124665550	1	64267	0	0	64267
S/G/Y/R/B/O	NT_016354	AC109357	125079448	1	chr4	NT_016354	AC097492	125186954	3	49807	0	0	49807
S/G/Y/R/B/O	NT_016354	AC109357	125079448	1			AC010354	125079448	2	67843	0	0	67843
S/G/Y/R/B/O	NT_016354	AC097492	125186954	3	chr4	NT_016354	AC026402	125329844	3	0	1999	0	1999
S/G/Y/R/B/O	NT_016354	AC097492	125186954	3			AC010354	125186954	2	142275	0	0	142275
S/G/Y/R/B/O	NT_016354	AC097492	125186954	3			AC098585	125329844	1	91852	0	925	92777
S/G/Y/R/B/O	NT_016354	AC026402	125329844	3	chr4	NT_016354	AC093821	125504803	3	0	1996	0	1996
S/G/Y/R/B/O	NT_016354	AC026402	125329844	3			AC025511	125079448	1	62551	4857	35190	102598
S/G/Y/R/B/O	NT_016354	AC026402	125329844	3			AC098585	125186954	1	67164	0	0	67164
S/G/Y/R/B/O	NT_016354	AC093821	125504803	3	chr4	NT_016354	AC092543	125627954	3	2000	0	0	2000
S/G/Y/R/B/O	NT_016354	AC093821	125504803	3			AC025511	125186954	1	43207	4344	12926	60477
S/G/Y/R/B/O	NT_016354	AC092543	125627954	3	chr4	NT_016354	AC096732	125685879	3	0	0	0	0
S/G/Y/R/B/O	NT_016354	AC092543	125627954	3			AC016342	125627954	1	31467	2838	0	34305
S/G/Y/R/B/O	NT_016354	AC096732	125685879	3	chr4	NT_016354	AC093767	125868690	3	0	1999	0	1999
S/G/Y/R/B/O	NT_016354	AC096732	125685879	3			AC009579	125504803	1	93750	2683	38561	134994
S/G/Y/R/B/O	NT_016354	AC096732	125685879	3			AC016342	125504803	1	86324	0	11974	98298
S/G/Y/R/B/O	NT_016354	AC093767	125868690	3	chr4	NT_016354	AC108075	126016195	3	0	1999	0	1999
S/G/Y/R/B/O	NT_016354	AC093767	125868690	3			AC011572	125868690	1	137203	0	0	137203
S/G/Y/R/B/O	NT_016354	AC108075	126016195	3	chr4	NT_016354	AC107061	126181986	1	51878	0	0	51878
S/G/Y/R/B/O	NT_016354	AC107061	126181986	1	chr4	NT_016354	AC009616	126290545	1	66895	0	0	66895
S/G/Y/R/B/O	NT_016354	AC107061	126181986	1	chr4	NT_016354	AC012655	126299791	1	48667	4996	3805	57468
S/G/Y/R/B/O	NT_016354	AC009616	126290545	1	chr4	NT_016354	AC012655	126299791	1	80794	2746	5207	88747
S/G/Y/R/B/O	NT_016354	AC009616	126290545	1	chr4	NT_016354	AC068694	124340816	1	53753	4739	2784	61276
S/G/Y/R/B/O	NT_016354	AC009616	126290545	1	chr4	NT_016354	AC072025	124349666	1	12276	2760	3487	18523
S/G/Y/R/B/O	NT_016354	AC012655	126299791	1
S/G/Y/R/B/O	NT_016354	AC012655	126299791	1	chr4	NT_016354	AC068694	124340816	1	51659	0	2791	54450
S/G/Y/R/B/O	NT_016354	AC012655	126299791	1	chr4	NT_016354	AC072025	124349666	1	19921	2760	7538	30219
S/G/Y/R/B/O	NT_016354	AC012655	126299791	1	chr4	NT_016354	AC107061	126181986	1	48667	4996	3805	57468