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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_022792 | AC079084 | 184462116 | 1 | chr4 | NT_022792 | AC021193 | 184486138 | 3 | 86874 | 0 | 1649 | 88523 |
| S/G/Y/R/B/O |
NT_022792 | AC079084 | 184462116 | 1 | chr4 | NT_022792 | AC092537 | 187049159 | 1 | 24616 | 0 | 0 | 24616 |
| S/G/Y/R/B/O |
NT_022792 | AC079084 | 184462116 | 1 |   |   | AC015607 | 192646267 | 1 | 24616 | 0 | 0 | 24616 |
| S/G/Y/R/B/O |
NT_022792 | AC021193 | 184486138 | 3 | chr4 | NT_022792 | AC108169 | 184696050 | 1 | 33970 | 0 | 0 | 33970 |
| S/G/Y/R/B/O |
NT_022792 | AC108169 | 184696050 | 1 | chr4 | NT_022792 | AC025022 | 184706464 | 1 | 97082 | 0 | 51706 | 148788 |
| S/G/Y/R/B/O |
NT_022792 | AC108169 | 184696050 | 1 | chr4 | NT_022792 | AC096747 | 184886629 | 3 | 42300 | 0 | 0 | 42300 |
| S/G/Y/R/B/O |
NT_022792 | AC108169 | 184696050 | 1 | chr4 | NT_022792 | AC110764 | 184723770 | 1 | 73119 | 0 | 51705 | 124824 |
| S/G/Y/R/B/O |
NT_022792 | AC025022 | 184706464 | 1 | chr4 | NT_022792 | AC110764 | 184723770 | 1 | 156888 | 0 | 0 | 156888 |
| S/G/Y/R/B/O |
NT_022792 | AC025022 | 184706464 | 1 | chr4 | NT_022792 | AC096747 | 184886629 | 3 | 79729 | 1799 | 0 | 81528 |
| S/G/Y/R/B/O |
NT_022792 | AC110764 | 184723770 | 1 | chr4 | NT_022792 | AC096747 | 184886629 | 3 | 81567 | 0 | 0 | 81567 |
| S/G/Y/R/B/O |
NT_022792 | AC110764 | 184723770 | 1 | chr4 | NT_022792 | AC108169 | 184696050 | 1 | 73119 | 0 | 51705 | 124824 |
| S/G/Y/R/B/O |
NT_022792 | AC096747 | 184886629 | 3 | chr4 | NT_022792 | AC104826 | 185011726 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC096747 | 184886629 | 3 | chr4 | NT_022792 | AC025022 | 184706464 | 1 | 79729 | 1799 | 0 | 81528 |
| S/G/Y/R/B/O |
NT_022792 | AC096747 | 184886629 | 3 | chr4 | NT_022792 | AC108169 | 184696050 | 1 | 42300 | 0 | 0 | 42300 |
| S/G/Y/R/B/O |
NT_022792 | AC104826 | 185011726 | 1 | chr4 | NT_022792 | AC104660 | 185146332 | 3 | 34441 | 0 | 0 | 34441 |
| S/G/Y/R/B/O |
NT_022792 | AC104826 | 185011726 | 1 |   |   | AC067900 | 184723770 | 1 | 110022 | 0 | 89881 | 199903 |
| S/G/Y/R/B/O |
NT_022792 | AC104660 | 185146332 | 3 | chr4 | NT_022792 | AC096590 | 185277608 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC104660 | 185146332 | 3 |   |   | AC008657 | 185146332 | 3 | 92984 | 0 | 0 | 92984 |
| S/G/Y/R/B/O |
NT_022792 | AC104660 | 185146332 | 3 |   |   | AC067900 | 185146332 | 1 | 34434 | 0 | 0 | 34434 |
| S/G/Y/R/B/O |
NT_022792 | AC104660 | 185146332 | 3 |   |   | AC084860 | 185146332 | 1 | 104013 | 0 | 0 | 104013 |
| S/G/Y/R/B/O |
NT_022792 | AC096590 | 185277608 | 3 | chr4 | NT_022792 | AC104803 | 185458167 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC096590 | 185277608 | 3 |   |   | AC008600 | 185011726 | 3 | 146795 | 0 | 0 | 146795 |
| S/G/Y/R/B/O |
NT_022792 | AC096590 | 185277608 | 3 |   |   | AC008657 | 185011726 | 3 | 75514 | 0 | 0 | 75514 |
| S/G/Y/R/B/O |
NT_022792 | AC096590 | 185277608 | 3 |   |   | AC021539 | 185011726 | 2 | 90234 | 0 | 0 | 90234 |
| S/G/Y/R/B/O |
NT_022792 | AC096590 | 185277608 | 3 |   |   | AC105382 | 185011726 | 1 | 42110 | 9274 | 19026 | 70410 |
| S/G/Y/R/B/O |
NT_022792 | AC104803 | 185458167 | 3 | chr4 | NT_022792 | AC108221 | 185559090 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC104803 | 185458167 | 3 |   |   | AC008465 | 185011726 | 3 | 102666 | 0 | 0 | 102666 |
| S/G/Y/R/B/O |
NT_022792 | AC104803 | 185458167 | 3 |   |   | AC021539 | 185011726 | 2 | 102907 | 0 | 0 | 102907 |
| S/G/Y/R/B/O |
NT_022792 | AC108221 | 185559090 | 1 | chr4 | NT_022792 | AC097489 | 185699177 | 3 | 85137 | 0 | 0 | 85137 |
| S/G/Y/R/B/O |
NT_022792 | AC108221 | 185559090 | 1 |   |   | AC008465 | 185011726 | 3 | 22377 | 0 | 0 | 22377 |
| S/G/Y/R/B/O |
NT_022792 | AC108221 | 185559090 | 1 |   |   | AC090803 | 185011726 | 1 | 156343 | 4376 | 0 | 160719 |
| S/G/Y/R/B/O |
NT_022792 | AC097489 | 185699177 | 3 | chr4 | NT_022792 | AC108141 | 185766079 | 1 | 115688 | 0 | 0 | 115688 |
| S/G/Y/R/B/O |
NT_022792 | AC097489 | 185699177 | 3 |   |   | AC090803 | 185699177 | 1 | 84212 | 0 | 0 | 84212 |
| S/G/Y/R/B/O |
NT_022792 | AC108141 | 185766079 | 1 | chr4 | NT_022792 | AC093699 | 185772257 | 3 | 92601 | 0 | 0 | 92601 |
| S/G/Y/R/B/O |
NT_022792 | AC093699 | 185772257 | 3 | chr4 | NT_022792 | AC019235 | 185909155 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC093699 | 185772257 | 3 |   |   | AL079351 | 185766079 | 2 | 43903 | 0 | 38237 | 82140 |
| S/G/Y/R/B/O |
NT_022792 | AC019235 | 185909155 | 3 | chr4 | NT_022792 | AC093757 | 186103835 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC019235 | 185909155 | 3 |   |   | AL079351 | 186103835 | 2 | 63262 | 0 | 0 | 63262 |
| S/G/Y/R/B/O |
NT_022792 | AC093757 | 186103835 | 3 | chr4 | NT_022792 | AC093736 | 186140247 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC093736 | 186140247 | 3 | chr4 | NT_022792 | AC093840 | 186257513 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC093840 | 186257513 | 3 | chr4 | NT_022792 | AC084741 | 186429327 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC093840 | 186257513 | 3 |   |   | AC016241 | 122442545 | 1 | 87556 | 5523 | 0 | 93079 |
| S/G/Y/R/B/O |
NT_022792 | AC084741 | 186429327 | 3 | chr4 | NT_022792 | AC093669 | 186573470 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_022792 | AC084741 | 186429327 | 3 |   |   | AC016241 | 186140247 | 1 | 69981 | 2730 | 0 | 72711 |
| S/G/Y/R/B/O |
NT_022792 | AC093669 | 186573470 | 3 | chr4 | NT_022792 | AC098864 | 186667590 | 3 | 0 | 2000 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC093669 | 186573470 | 3 |   |   | AC016316 | 186573470 | 1 | 95025 | 0 | 0 | 95025 |
| S/G/Y/R/B/O |
NT_022792 | AC098864 | 186667590 | 3 | chr4 | NT_022792 | AC108142 | 186881870 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_022792 | AC098864 | 186667590 | 3 |   |   | AC016316 | 186667590 | 1 | 59376 | 0 | 224 | 59600 |
| S/G/Y/R/B/O |
NT_022792 | AC108142 | 186881870 | 3 | chr4 | NT_022792 | AC084844 | 186942494 | 1 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_022792 | AC084844 | 186942494 | 1 | chr4 | NT_022792 | AC092537 | 187049159 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC084844 | 186942494 | 1 | chr4 | NT_022792 | AC067731 | 188954806 | 1 | 37280 | 0 | 0 | 37280 |
| S/G/Y/R/B/O |
NT_022792 | AC092537 | 187049159 | 1 | chr4 | NT_022792 | AC096724 | 187102053 | 1 | 15503 | 20559 | 23534 | 59596 |
| S/G/Y/R/B/O |
NT_022792 | AC092537 | 187049159 | 1 | chr4 | NT_022792 | AC079084 | 184462116 | 1 | 24616 | 0 | 0 | 24616 |
| S/G/Y/R/B/O |
NT_022792 | AC092537 | 187049159 | 1 | chr4 | NT_022792 | AC082649 | 187155337 | 3 | 63878 | 0 | 0 | 63878 |
| S/G/Y/R/B/O |
NT_022792 | AC092537 | 187049159 | 1 |   |   | AC015607 | 118449979 | 1 | 155963 | 0 | 0 | 155963 |
| S/G/Y/R/B/O |
NT_022792 | AC096724 | 187102053 | 1 | chr4 | NT_022792 | AC082649 | 187155337 | 3 | 16274 | 12827 | 21092 | 50193 |
| S/G/Y/R/B/O |
NT_022792 | AC096724 | 187102053 | 1 |   |   | AC015607 | 118279914 | 1 | 15503 | 23438 | 23601 | 62542 |
| S/G/Y/R/B/O |
NT_022792 | AC082649 | 187155337 | 3 | chr4 | NT_022792 | AC020551 | 187326484 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_022792 | AC082649 | 187155337 | 3 | chr4 | NT_022792 | AC092537 | 187049159 | 1 | 63878 | 0 | 0 | 63878 |
| S/G/Y/R/B/O |
NT_022792 | AC082649 | 187155337 | 3 |   |   | AC015607 | 187049159 | 1 | 63878 | 0 | 0 | 63878 |
| S/G/Y/R/B/O |
NT_022792 | AC082649 | 187155337 | 3 |   |   | AC068622 | 187326484 | 1 | 100246 | 2763 | 8121 | 111130 |
| S/G/Y/R/B/O |
NT_022792 | AC020551 | 187326484 | 3 | chr4 | NT_022792 | AC021011 | 187444522 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC020551 | 187326484 | 3 |   |   | AC068622 | 187444522 | 1 | 62045 | 0 | 959 | 63004 |
| S/G/Y/R/B/O |
NT_022792 | AC021011 | 187444522 | 3 | chr4 | NT_022792 | AC097479 | 187486480 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_022792 | AC097479 | 187486480 | 3 | chr4 | NT_022792 | AC018710 | 187622328 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC018710 | 187622328 | 3 | chr4 | NT_022792 | AC095065 | 187817564 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC018710 | 187622328 | 3 |   |   | AC015834 | 187444522 | 1 | 30283 | 2245 | 2620 | 35148 |
| S/G/Y/R/B/O |
NT_022792 | AC018710 | 187622328 | 3 |   |   | AC021634 | 187444522 | 1 | 95310 | 0 | 5399 | 100709 |
| S/G/Y/R/B/O |
NT_022792 | AC095065 | 187817564 | 3 | chr4 | NT_022792 | AC017087 | 187916032 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC095065 | 187817564 | 3 |   |   | AC015834 | 187486480 | 1 | 83606 | 6489 | 1294 | 91389 |
| S/G/Y/R/B/O |
NT_022792 | AC095065 | 187817564 | 3 |   |   | AC021634 | 187622328 | 1 | 61634 | 0 | 0 | 61634 |
| S/G/Y/R/B/O |
NT_022792 | AC017087 | 187916032 | 3 | chr4 | NT_022792 | AC113605 | 188087777 | 1 | 74551 | 0 | 15523 | 90074 |
| S/G/Y/R/B/O |
NT_022792 | AC017087 | 187916032 | 3 | chr4 | NT_022792 | AC109641 | 188142148 | 1 | 61621 | 0 | 53255 | 114876 |
| S/G/Y/R/B/O |
NT_022792 | AC017087 | 187916032 | 3 |   |   | AC015834 | 187622328 | 1 | 24575 | 5741 | 2568 | 32884 |
| S/G/Y/R/B/O |
NT_022792 | AC113605 | 188087777 | 1 | chr4 | NT_022792 | AC109641 | 188142148 | 1 | 85774 | 0 | 53118 | 138892 |
| S/G/Y/R/B/O |
NT_022792 | AC113605 | 188087777 | 1 | chr4 | NT_022792 | AC080110 | 188142419 | 1 | 43323 | 10583 | 459 | 54365 |
| S/G/Y/R/B/O |
NT_022792 | AC109641 | 188142148 | 1 | chr4 | NT_022792 | AC080110 | 188142419 | 1 | 58792 | 3677 | 459 | 62928 |
| S/G/Y/R/B/O |
NT_022792 | AC109641 | 188142148 | 1 | chr4 | NT_022792 | AC017087 | 187916032 | 3 | 61621 | 0 | 53255 | 114876 |
| S/G/Y/R/B/O |
NT_022792 | AC109641 | 188142148 | 1 | chr4 | NT_022792 | AC079008 | 188147150 | 1 | 19993 | 0 | 0 | 19993 |
| S/G/Y/R/B/O |
NT_022792 | AC080110 | 188142419 | 1 | chr4 | NT_022792 | AC079008 | 188147150 | 1 | 20976 | 9380 | 7677 | 38033 |
| S/G/Y/R/B/O |
NT_022792 | AC080110 | 188142419 | 1 | chr4 | NT_022792 | AC097482 | 188169717 | 3 | 63736 | 11943 | 8035 | 83714 |
| S/G/Y/R/B/O |
NT_022792 | AC080110 | 188142419 | 1 | chr4 | NT_022792 | AC113605 | 188087777 | 1 | 43323 | 10583 | 459 | 54365 |
| S/G/Y/R/B/O |
NT_022792 | AC079008 | 188147150 | 1 | chr4 | NT_022792 | AC097482 | 188169717 | 3 | 147833 | 7434 | 0 | 155267 |
| S/G/Y/R/B/O |
NT_022792 | AC079008 | 188147150 | 1 | chr4 | NT_022792 | AC109641 | 188142148 | 1 | 19993 | 0 | 0 | 19993 |
| S/G/Y/R/B/O |
NT_022792 | AC079008 | 188147150 | 1 |   |   | AC080103 | 16933428 | 1 | 13209 | 2796 | 0 | 16005 |
| S/G/Y/R/B/O |
NT_022792 | AC097482 | 188169717 | 3 | chr4 | NT_022792 | AC108205 | 188328480 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC097482 | 188169717 | 3 | chr4 | NT_022792 | AC080110 | 188142419 | 1 | 63736 | 11943 | 8035 | 83714 |
| S/G/Y/R/B/O |
NT_022792 | AC097482 | 188169717 | 3 |   |   | AC079294 | 188147150 | 1 | 24445 | 2258 | 2364 | 29067 |
| S/G/Y/R/B/O |
NT_022792 | AC097482 | 188169717 | 3 |   |   | AC080103 | 188147150 | 1 | 47121 | 2178 | 4918 | 54217 |
| S/G/Y/R/B/O |
NT_022792 | AC108205 | 188328480 | 3 | chr4 | NT_022792 | AC079226 | 188461203 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC108205 | 188328480 | 3 | chr4 | NT_006118 | AC095041 | 184238111 | 3 | 120154 | 0 | 0 | 120154 |
| S/G/Y/R/B/O |
NT_022792 | AC108205 | 188328480 | 3 |   |   | AC079294 | 90586636 | 1 | 65687 | 8642 | 4590 | 78919 |
| S/G/Y/R/B/O |
NT_022792 | AC108205 | 188328480 | 3 |   |   | AC080103 | 90586636 | 1 | 29546 | 0 | 0 | 29546 |
| S/G/Y/R/B/O |
NT_022792 | AC079226 | 188461203 | 3 | chr4 | NT_022792 | AC105288 | 188643235 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC105288 | 188643235 | 3 | chr4 | NT_022792 | AC109353 | 188784150 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022792 | AC109353 | 188784150 | 3 | chr4 | NT_022792 | AC093601 | 188836677 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022792 | AC109353 | 188784150 | 3 | chr4 | NT_022792 | AC067731 | 188954806 | 1 | 12026 | 0 | 0 | 12026 |
| S/G/Y/R/B/O |
NT_022792 | AC093601 | 188836677 | 3 | chr4 | NT_022792 | AC067731 | 188954806 | 1 | 71342 | 1429 | 31827 | 104598 |
| S/G/Y/R/B/O |
NT_022792 | AC067731 | 188954806 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_022792 | AC067731 | 188954806 | 1 | chr4 | NT_022792 | AC084844 | 186942494 | 1 | 37280 | 0 | 0 | 37280 |
| S/G/Y/R/B/O |
NT_022792 | AC067731 | 188954806 | 1 | chr4 | NT_022792 | AC109353 | 188784150 | 3 | 12026 | 0 | 0 | 12026 |
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