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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_006216 | AC093851 | 73205884 | 1 | chr4 | NT_006216 | AC019005 | 73206719 | 1 | 63389 | 1820 | 0 | 65209 |
| S/G/Y/R/B/O |
NT_006216 | AC093851 | 73205884 | 1 |   |   | AC023765 | 73206719 | 1 | 145595 | 0 | 54416 | 200011 |
| S/G/Y/R/B/O |
NT_006216 | AC019005 | 73206719 | 1 | chr4 | NT_006216 | AC022863 | 73213716 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC019005 | 73206719 | 1 | chr4 | NT_006216 | AC096713 | 73438099 | 3 | 133868 | 0 | 2547 | 136415 |
| S/G/Y/R/B/O |
NT_006216 | AC019005 | 73206719 | 1 |   |   | AC023765 | 1757092 | 1 | 47373 | 1820 | 0 | 49193 |
| S/G/Y/R/B/O |
NT_006216 | AC022863 | 73213716 | 1 | chr4 | NT_006216 | AC096713 | 73438099 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC022863 | 73213716 | 1 | chr4 | NT_006216 | AC104814 | 74803244 | 3 | 91869 | 0 | 0 | 91869 |
| S/G/Y/R/B/O |
NT_006216 | AC022863 | 73213716 | 1 | chr4 | NT_006216 | AC110082 | 74908998 | 3 | 68860 | 0 | 0 | 68860 |
| S/G/Y/R/B/O |
NT_006216 | AC022863 | 73213716 | 1 |   |   | AC068203 | 1768579 | 1 | 80110 | 4941 | 0 | 85051 |
| S/G/Y/R/B/O |
NT_006216 | AC096713 | 73438099 | 3 | chr4 | NT_006216 | AC110783 | 73560453 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC096713 | 73438099 | 3 | chr4 | NT_006216 | AC019005 | 73206719 | 1 | 133868 | 0 | 2547 | 136415 |
| S/G/Y/R/B/O |
NT_006216 | AC110783 | 73560453 | 3 | chr4 | NT_006216 | AC079230 | 73581934 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC079230 | 73581934 | 3 | chr4 | NT_006216 | AC110006 | 73743479 | 2 | 87266 | 0 | 0 | 87266 |
| S/G/Y/R/B/O |
NT_006216 | AC110006 | 73743479 | 2 | chr4 | NT_006216 | AC019089 | 73756972 | 3 | 107610 | 0 | 0 | 107610 |
| S/G/Y/R/B/O |
NT_006216 | AC110006 | 73743479 | 2 |   |   | AC112226 | 73581934 | 3 | 16168 | 0 | 0 | 16168 |
| S/G/Y/R/B/O |
NT_006216 | AC019089 | 73756972 | 3 | chr4 | NT_006216 | AC024722 | 73934132 | 3 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_006216 | AC019089 | 73756972 | 3 |   |   | AC073514 | 73934132 | 1 | 61725 | 5278 | 3300 | 70303 |
| S/G/Y/R/B/O |
NT_006216 | AC024722 | 73934132 | 3 | chr4 | NT_006216 | AC068721 | 74050062 | 3 | 0 | 1985 | 0 | 1985 |
| S/G/Y/R/B/O |
NT_006216 | AC024722 | 73934132 | 3 |   |   | AC073514 | 74050062 | 1 | 90884 | 2494 | 0 | 93378 |
| S/G/Y/R/B/O |
NT_006216 | AC024722 | 73934132 | 3 |   |   | AP002823 | 74050062 | 2 | 21074 | 0 | 9583 | 30657 |
| S/G/Y/R/B/O |
NT_006216 | AC024722 | 73934132 | 3 |   |   | L10641 | 74050062 | 3 | 55028 | 0 | 0 | 55028 |
| S/G/Y/R/B/O |
NT_006216 | AC068721 | 74050062 | 3 | chr4 | NT_006216 | AC106898 | 74225344 | 1 | 29580 | 0 | 0 | 29580 |
| S/G/Y/R/B/O |
NT_006216 | AC106898 | 74225344 | 1 | chr4 | NT_006216 | AC106051 | 74393007 | 1 | 0 | 0 | 27402 | 27402 |
| S/G/Y/R/B/O |
NT_006216 | AC106051 | 74393007 | 1 | chr4 | NT_006216 | AC095056 | 74475892 | 3 | 58086 | 0 | 0 | 58086 |
| S/G/Y/R/B/O |
NT_006216 | AC095056 | 74475892 | 3 | chr4 | NT_006216 | AC093790 | 74652885 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC093790 | 74652885 | 3 | chr4 | NT_006216 | AC104814 | 74803244 | 3 | 75935 | 0 | 0 | 75935 |
| S/G/Y/R/B/O |
NT_006216 | AC093790 | 74652885 | 3 |   |   | AC068203 | 74393007 | 1 | 70132 | 0 | 0 | 70132 |
| S/G/Y/R/B/O |
NT_006216 | AC104814 | 74803244 | 3 | chr4 | NT_006216 | AC110082 | 74908998 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC104814 | 74803244 | 3 | chr4 | NT_006216 | AC022863 | 73213716 | 1 | 91869 | 0 | 0 | 91869 |
| S/G/Y/R/B/O |
NT_006216 | AC104814 | 74803244 | 3 |   |   | AC068203 | 73213716 | 1 | 167646 | 4941 | 0 | 172587 |
| S/G/Y/R/B/O |
NT_006216 | AC110082 | 74908998 | 3 | chr4 | NT_006216 | AC096728 | 74979380 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_006216 | AC110082 | 74908998 | 3 | chr4 | NT_006216 | AC022863 | 73213716 | 1 | 68860 | 0 | 0 | 68860 |
| S/G/Y/R/B/O |
NT_006216 | AC096728 | 74979380 | 3 | chr4 | NT_006216 | AC093839 | 75060076 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_006216 | AC093839 | 75060076 | 3 | chr4 | NT_006216 | AC095053 | 75220598 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC095053 | 75220598 | 3 | chr4 | NT_006216 | AC105757 | 75330721 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC105757 | 75330721 | 3 | chr4 | NT_006216 | AC053527 | 75343870 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_006216 | AC053527 | 75343870 | 3 | chr4 | NT_006216 | AC108157 | 75575120 | 3 | 0 | 1990 | 0 | 1990 |
| S/G/Y/R/B/O |
NT_006216 | AC053527 | 75343870 | 3 |   |   | AP002857 | 75575120 | 1 | 76196 | 0 | 0 | 76196 |
| S/G/Y/R/B/O |
NT_006216 | AC053527 | 75343870 | 3 |   |   | AP002911 | 75575120 | 1 | 17123 | 0 | 0 | 17123 |
| S/G/Y/R/B/O |
NT_006216 | AC108157 | 75575120 | 3 | chr4 | NT_006216 | AC110752 | 75740121 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC108157 | 75575120 | 3 |   |   | AC008076 | 75575120 | 1 | 10083 | 4570 | 18380 | 33033 |
| S/G/Y/R/B/O |
NT_006216 | AC108157 | 75575120 | 3 |   |   | AP002825 | 75343870 | 1 | 90071 | 0 | 0 | 90071 |
| S/G/Y/R/B/O |
NT_006216 | AC108157 | 75575120 | 3 |   |   | AP002911 | 75343870 | 1 | 74616 | 0 | 9984 | 84600 |
| S/G/Y/R/B/O |
NT_006216 | AC108157 | 75575120 | 3 |   |   | M12523 | 75343870 | 3 | 18980 | 0 | 0 | 18980 |
| S/G/Y/R/B/O |
NT_006216 | AC108157 | 75575120 | 3 |   |   | M16110 | 75343870 | 3 | 27475 | 0 | 0 | 27475 |
| S/G/Y/R/B/O |
NT_006216 | AC110752 | 75740121 | 3 | chr4 | NT_006216 | AC074250 | 75747463 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC074250 | 75747463 | 3 | chr4 | NT_006216 | AC112518 | 75944795 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC074250 | 75747463 | 3 | chr4 | NT_033072 | AL136327 | 76807446 | 2 | 84839 | 0 | 49760 | 134599 |
| S/G/Y/R/B/O |
NT_006216 | AC074250 | 75747463 | 3 |   |   | AP002825 | 76807446 | 1 | 33494 | 0 | 0 | 33494 |
| S/G/Y/R/B/O |
NT_006216 | AC112518 | 75944795 | 3 | chr4 | NT_006216 | AC108029 | 76021204 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC112518 | 75944795 | 3 | chr4 | NT_033072 | AL136327 | 76807446 | 2 | 36658 | 0 | 3408 | 40066 |
| S/G/Y/R/B/O |
NT_006216 | AC112518 | 75944795 | 3 |   |   | AL133124 | 76807446 | 2 | 39782 | 0 | 0 | 39782 |
| S/G/Y/R/B/O |
NT_006216 | AC108029 | 76021204 | 3 | chr4 | NT_006216 | AC092438 | 76089336 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC092438 | 76089336 | 3 | chr4 | NT_006216 | AC097709 | 76155019 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_006216 | AC092438 | 76089336 | 3 |   |   | AC010784 | 76807446 | 1 | 46234 | 0 | 0 | 46234 |
| S/G/Y/R/B/O |
NT_006216 | AC092438 | 76089336 | 3 |   |   | AL133124 | 27084065 | 2 | 48309 | 0 | 0 | 48309 |
| S/G/Y/R/B/O |
NT_006216 | AC097709 | 76155019 | 3 | chr4 | NT_006216 | AC093677 | 76313760 | 3 | 0 | 451 | 0 | 451 |
| S/G/Y/R/B/O |
NT_006216 | AC097709 | 76155019 | 3 |   |   | AC010784 | 27084065 | 1 | 130157 | 0 | 4490 | 134647 |
| S/G/Y/R/B/O |
NT_006216 | AC097709 | 76155019 | 3 |   |   | AC013573 | 27084065 | 1 | 22688 | 0 | 0 | 22688 |
| S/G/Y/R/B/O |
NT_006216 | AC097709 | 76155019 | 3 |   |   | AC046188 | 27084065 | 1 | 97610 | 0 | 7908 | 105518 |
| S/G/Y/R/B/O |
NT_006216 | AC097709 | 76155019 | 3 |   |   | AP001194 | 76313760 | 1 | 19894 | 2345 | 0 | 22239 |
| S/G/Y/R/B/O |
NT_006216 | AC093677 | 76313760 | 3 | chr4 | NT_006216 | AC097470 | 76461488 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC093677 | 76313760 | 3 |   |   | AC013573 | 76313760 | 1 | 125413 | 0 | 7388 | 132801 |
| S/G/Y/R/B/O |
NT_006216 | AC093677 | 76313760 | 3 |   |   | AP001194 | 76155019 | 1 | 132088 | 6164 | 2386 | 140638 |
| S/G/Y/R/B/O |
NT_006216 | AC097470 | 76461488 | 3 | chr4 | NT_006216 | AC021180 | 76570190 | 1 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC097470 | 76461488 | 3 |   |   | AP001194 | 76313760 | 1 | 23177 | 0 | 698 | 23875 |
| S/G/Y/R/B/O |
NT_006216 | AC021180 | 76570190 | 1 | chr4 | NT_006216 | AC096858 | 76742130 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_006216 | AC096858 | 76742130 | 3 |   |   |   |   |   |   |   |   |   |
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