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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_022853 | AC111194 | 56575915 | 1 | chr4 | NT_022853 | AC021220 | 56710136 | 3 | 57130 | 0 | 0 | 57130 |
| S/G/Y/R/B/O |
NT_022853 | AC021220 | 56710136 | 3 | chr4 | NT_022853 | AC108209 | 56883930 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022853 | AC108209 | 56883930 | 3 | chr4 | NT_022853 | AC064824 | 56925665 | 3 | 0 | 1985 | 0 | 1985 |
| S/G/Y/R/B/O |
NT_022853 | AC064824 | 56925665 | 3 | chr4 | NT_022853 | AC069200 | 56997719 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_022853 | AC069200 | 56997719 | 3 | chr4 | NT_022853 | AC110372 | 57144643 | 1 | 76745 | 0 | 0 | 76745 |
| S/G/Y/R/B/O |
NT_022853 | AC110372 | 57144643 | 1 | chr4 | NT_022853 | AC024243 | 57259663 | 3 | 114769 | 0 | 0 | 114769 |
| S/G/Y/R/B/O |
NT_022853 | AC024243 | 57259663 | 3 | chr4 | NT_022853 | AC084842 | 57308583 | 1 | 14721 | 0 | 95 | 14816 |
| S/G/Y/R/B/O |
NT_022853 | AC084842 | 57308583 | 1 | chr4 | NT_022853 | AC112714 | 57326342 | 1 | 20036 | 33396 | 19340 | 72772 |
| S/G/Y/R/B/O |
NT_022853 | AC084842 | 57308583 | 1 | chr4 | NT_022853 | AC110611 | 57360763 | 1 | 12515 | 0 | 0 | 12515 |
| S/G/Y/R/B/O |
NT_022853 | AC112714 | 57326342 | 1 | chr4 | NT_022853 | AC110611 | 57360763 | 1 | 38851 | 18195 | 10692 | 67738 |
| S/G/Y/R/B/O |
NT_022853 | AC110611 | 57360763 | 1 | chr4 | NT_022853 | AC079006 | 57474126 | 1 | 67213 | 4101 | 9478 | 80792 |
| S/G/Y/R/B/O |
NT_022853 | AC110611 | 57360763 | 1 | chr4 | NT_022853 | AC084842 | 57308583 | 1 | 12515 | 0 | 0 | 12515 |
| S/G/Y/R/B/O |
NT_022853 | AC079006 | 57474126 | 1 | chr4 | NT_022853 | AC092627 | 57552597 | 3 | 42637 | 8630 | 3039 | 54306 |
| S/G/Y/R/B/O |
NT_022853 | AC092627 | 57552597 | 3 | chr4 | NT_022853 | AC022267 | 57655496 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022853 | AC022267 | 57655496 | 3 | chr4 | NT_022853 | AC068620 | 57852968 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_022853 | AC068620 | 57852968 | 3 | chr4 | NT_022853 | AC114766 | 57998502 | 1 | 29296 | 9513 | 2540 | 41349 |
| S/G/Y/R/B/O |
NT_022853 | AC068620 | 57852968 | 3 | chr4 | NT_022853 | AC068478 | 58001853 | 1 | 44524 | 0 | 1286 | 45810 |
| S/G/Y/R/B/O |
NT_022853 | AC114766 | 57998502 | 1 | chr4 | NT_022853 | AC068478 | 58001853 | 1 | 61202 | 33678 | 10629 | 105509 |
| S/G/Y/R/B/O |
NT_022853 | AC068478 | 58001853 | 1 | chr4 | NT_022853 | AC108215 | 58084447 | 1 | 17979 | 0 | 871 | 18850 |
| S/G/Y/R/B/O |
NT_022853 | AC068478 | 58001853 | 1 | chr4 | NT_022853 | AC068620 | 57852968 | 3 | 44524 | 0 | 1286 | 45810 |
| S/G/Y/R/B/O |
NT_022853 | AC108215 | 58084447 | 1 | chr4 | NT_022853 | AC022483 | 58266814 | 3 | 19843 | 0 | 0 | 19843 |
| S/G/Y/R/B/O |
NT_022853 | AC022483 | 58266814 | 3 | chr4 | NT_022853 | AC069307 | 58452611 | 1 | 14661 | 0 | 0 | 14661 |
| S/G/Y/R/B/O |
NT_022853 | AC022483 | 58266814 | 3 | chr4 | NT_022853 | AC055850 | 60511078 | 1 | 37032 | 12238 | 8447 | 57717 |
| S/G/Y/R/B/O |
NT_022853 | AC069307 | 58452611 | 1 | chr4 | NT_022853 | AC068261 | 58460916 | 1 | 137988 | 12211 | 5448 | 155647 |
| S/G/Y/R/B/O |
NT_022853 | AC069307 | 58452611 | 1 | chr4 | NT_022853 | AC055850 | 60511078 | 1 | 31914 | 15611 | 5962 | 53487 |
| S/G/Y/R/B/O |
NT_022853 | AC068261 | 58460916 | 1 | chr4 | NT_022853 | AC111197 | 58655947 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022853 | AC068261 | 58460916 | 1 | chr4 | NT_022853 | AC055850 | 60511078 | 1 | 14799 | 5862 | 3999 | 24660 |
| S/G/Y/R/B/O |
NT_022853 | AC111197 | 58655947 | 3 | chr4 | NT_022853 | AC105390 | 58714009 | 1 | 48359 | 0 | 0 | 48359 |
| S/G/Y/R/B/O |
NT_022853 | AC105390 | 58714009 | 1 | chr4 | NT_022853 | AC006222 | 58756327 | 3 | 91383 | 0 | 0 | 91383 |
| S/G/Y/R/B/O |
NT_022853 | AC006222 | 58756327 | 3 | chr4 | NT_022853 | AC073196 | 58921970 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_022853 | AC073196 | 58921970 | 3 | chr4 | NT_022853 | AC013724 | 58988895 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_022853 | AC013724 | 58988895 | 3 | chr4 | NT_022853 | AC107396 | 59153416 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_022853 | AC107396 | 59153416 | 3 | chr4 | NT_022853 | AC093725 | 59196138 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022853 | AC093725 | 59196138 | 3 | chr4 | NT_022853 | AC104804 | 59357934 | 1 | 102047 | 0 | 0 | 102047 |
| S/G/Y/R/B/O |
NT_022853 | AC093725 | 59196138 | 3 |   |   | AC036195 | 59196138 | 1 | 73679 | 7405 | 1419 | 82503 |
| S/G/Y/R/B/O |
NT_022853 | AC104804 | 59357934 | 1 | chr4 | NT_022853 | AC104790 | 59449966 | 1 | 52624 | 0 | 0 | 52624 |
| S/G/Y/R/B/O |
NT_022853 | AC104804 | 59357934 | 1 |   |   | AC022553 | 128013648 | 1 | 28471 | 0 | 0 | 28471 |
| S/G/Y/R/B/O |
NT_022853 | AC104804 | 59357934 | 1 |   |   | AC036195 | 128013648 | 1 | 139628 | 11576 | 1836 | 153040 |
| S/G/Y/R/B/O |
NT_022853 | AC104790 | 59449966 | 1 | chr4 | NT_022853 | AC106867 | 59519467 | 3 | 41530 | 0 | 0 | 41530 |
| S/G/Y/R/B/O |
NT_022853 | AC104790 | 59449966 | 1 | chr4 | NT_022853 | AC027782 | 60504684 | 1 | 25131 | 1824 | 7766 | 34721 |
| S/G/Y/R/B/O |
NT_022853 | AC104790 | 59449966 | 1 |   |   | AC021306 | 128013648 | 1 | 27692 | 0 | 0 | 27692 |
| S/G/Y/R/B/O |
NT_022853 | AC104790 | 59449966 | 1 |   |   | AC022553 | 128013648 | 1 | 124837 | 0 | 0 | 124837 |
| S/G/Y/R/B/O |
NT_022853 | AC104790 | 59449966 | 1 |   |   | AC036195 | 60504684 | 1 | 37994 | 4278 | 1836 | 44108 |
| S/G/Y/R/B/O |
NT_022853 | AC106867 | 59519467 | 3 | chr4 | NT_022853 | AC096725 | 59628994 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_022853 | AC106867 | 59519467 | 3 | chr4 | NT_022853 | AC027782 | 60504684 | 1 | 87456 | 3611 | 3937 | 95004 |
| S/G/Y/R/B/O |
NT_022853 | AC106867 | 59519467 | 3 |   |   | AC021306 | 59519467 | 1 | 83331 | 0 | 6481 | 89812 |
| S/G/Y/R/B/O |
NT_022853 | AC106867 | 59519467 | 3 |   |   | AC022553 | 59519467 | 1 | 44748 | 0 | 0 | 44748 |
| S/G/Y/R/B/O |
NT_022853 | AC096725 | 59628994 | 3 | chr4 | NT_022853 | AC097710 | 59809621 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022853 | AC096725 | 59628994 | 3 | chr4 | NT_022853 | AC027782 | 60504684 | 1 | 40552 | 1691 | 4440 | 46683 |
| S/G/Y/R/B/O |
NT_022853 | AC096725 | 59628994 | 3 |   |   | AC011627 | 59449966 | 1 | 104972 | 2572 | 13647 | 121191 |
| S/G/Y/R/B/O |
NT_022853 | AC096725 | 59628994 | 3 |   |   | AC021306 | 59449966 | 1 | 66586 | 1518 | 0 | 68104 |
| S/G/Y/R/B/O |
NT_022853 | AC097710 | 59809621 | 3 | chr4 | NT_022853 | AC019133 | 59964469 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022853 | AC097710 | 59809621 | 3 |   |   | AC011627 | 59519467 | 1 | 54864 | 0 | 2090 | 56954 |
| S/G/Y/R/B/O |
NT_022853 | AC097710 | 59809621 | 3 |   |   | AC069196 | 59519467 | 1 | 70070 | 5846 | 3544 | 79460 |
| S/G/Y/R/B/O |
NT_022853 | AC019133 | 59964469 | 3 | chr4 | NT_022853 | AC098675 | 60148025 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_022853 | AC019133 | 59964469 | 3 |   |   | AC025338 | 59519467 | 1 | 86998 | 0 | 0 | 86998 |
| S/G/Y/R/B/O |
NT_022853 | AC019133 | 59964469 | 3 |   |   | AC069196 | 59519467 | 1 | 46928 | 6762 | 21143 | 74833 |
| S/G/Y/R/B/O |
NT_022853 | AC098675 | 60148025 | 3 | chr4 | NT_022853 | AC017091 | 60237940 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_022853 | AC098675 | 60148025 | 3 |   |   | AC025338 | 59964469 | 1 | 85868 | 0 | 0 | 85868 |
| S/G/Y/R/B/O |
NT_022853 | AC017091 | 60237940 | 3 | chr4 | NT_022853 | AC027782 | 60504684 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022853 | AC027782 | 60504684 | 1 | chr4 | NT_022853 | AC055850 | 60511078 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_022853 | AC027782 | 60504684 | 1 | chr4 | NT_022853 | AC096725 | 59628994 | 3 | 40552 | 1691 | 4440 | 46683 |
| S/G/Y/R/B/O |
NT_022853 | AC027782 | 60504684 | 1 | chr4 | NT_022853 | AC104790 | 59449966 | 1 | 25131 | 1824 | 7766 | 34721 |
| S/G/Y/R/B/O |
NT_022853 | AC027782 | 60504684 | 1 | chr4 | NT_022853 | AC106867 | 59519467 | 3 | 87456 | 3611 | 3937 | 95004 |
| S/G/Y/R/B/O |
NT_022853 | AC027782 | 60504684 | 1 |   |   | AC021306 | 128013648 | 1 | 69130 | 3477 | 3923 | 76530 |
| S/G/Y/R/B/O |
NT_022853 | AC027782 | 60504684 | 1 |   |   | AC022553 | 128013648 | 1 | 31633 | 1824 | 1342 | 34799 |
| S/G/Y/R/B/O |
NT_022853 | AC055850 | 60511078 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_022853 | AC055850 | 60511078 | 1 | chr4 | NT_022853 | AC022483 | 58266814 | 3 | 37032 | 12238 | 8447 | 57717 |
| S/G/Y/R/B/O |
NT_022853 | AC055850 | 60511078 | 1 | chr4 | NT_022853 | AC068261 | 58460916 | 1 | 14799 | 5862 | 3999 | 24660 |
| S/G/Y/R/B/O |
NT_022853 | AC055850 | 60511078 | 1 | chr4 | NT_022853 | AC069307 | 58452611 | 1 | 31914 | 15611 | 5962 | 53487 |
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