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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008583 | AC022361 | 64871970 | 1 | chr10 | NT_008583 | AC024598 | 64879814 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008583 | AC022361 | 64871970 | 1 | chr10 | NT_008583 | AC022387 | 66150630 | 3 | 68974 | 2103 | 13365 | 84442 |
| S/G/Y/R/B/O |
NT_008583 | AC022361 | 64871970 | 1 | chr10 | NT_008583 | AC069543 | 66334449 | 3 | 11019 | 2539 | 3751 | 17309 |
| S/G/Y/R/B/O |
NT_008583 | AC022361 | 64871970 | 1 |   |   | AC010863 | 64572122 | 3 | 21740 | 2097 | 8056 | 31893 |
| S/G/Y/R/B/O |
NT_008583 | AC022361 | 64871970 | 1 |   |   | AC022396 | 78266393 | 1 | 63161 | 2103 | 19041 | 84305 |
| S/G/Y/R/B/O |
NT_008583 | AC024598 | 64879814 | 3 | chr10 | NT_008583 | AC067752 | 65054548 | 3 | 102397 | 0 | 0 | 102397 |
| S/G/Y/R/B/O |
NT_008583 | AC024598 | 64879814 | 3 | chr10 | NT_033897 | AC024597 | 64668390 | 3 | 39428 | 0 | 0 | 39428 |
| S/G/Y/R/B/O |
NT_008583 | AC067752 | 65054548 | 3 | chr10 | NT_008583 | AC067751 | 65140602 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008583 | AC067751 | 65140602 | 3 | chr10 | NT_008583 | AL133417 | 65319484 | 3 | 108489 | 0 | 0 | 108489 |
| S/G/Y/R/B/O |
NT_008583 | AC067751 | 65140602 | 3 |   |   | AC016212 | 64879814 | 1 | 117391 | 1791 | 0 | 119182 |
| S/G/Y/R/B/O |
NT_008583 | AL133417 | 65319484 | 3 | chr10 | NT_008583 | AL357125 | 65394756 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008583 | AL133417 | 65319484 | 3 |   |   | AC016212 | 65319484 | 1 | 82996 | 4467 | 0 | 87463 |
| S/G/Y/R/B/O |
NT_008583 | AL133417 | 65319484 | 3 |   |   | AL353781 | 65140602 | 1 | 75795 | 0 | 10833 | 86628 |
| S/G/Y/R/B/O |
NT_008583 | AL357125 | 65394756 | 3 | chr10 | NT_008583 | AL583888 | 65509704 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008583 | AL357125 | 65394756 | 3 |   |   | AL353781 | 65319484 | 1 | 110609 | 2848 | 1672 | 115129 |
| S/G/Y/R/B/O |
NT_008583 | AL583888 | 65509704 | 3 | chr10 | NT_008583 | AL590502 | 65524964 | 2 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_008583 | AL590502 | 65524964 | 2 | chr10 | NT_008583 | AL713895 | 65698546 | 2 | 7458 | 0 | 0 | 7458 |
| S/G/Y/R/B/O |
NT_008583 | AL713895 | 65698546 | 2 | chr10 | NT_008583 | AL607128 | 65748574 | 3 | 111296 | 0 | 0 | 111296 |
| S/G/Y/R/B/O |
NT_008583 | AL713895 | 65698546 | 2 |   |   | AL713976 | 65748574 | 1 | 26163 | 14225 | 0 | 40388 |
| S/G/Y/R/B/O |
NT_008583 | AL607128 | 65748574 | 3 | chr10 | NT_008583 | AC022022 | 65882816 | 3 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_008583 | AL607128 | 65748574 | 3 |   |   | AL713976 | 65698546 | 1 | 22637 | 6434 | 0 | 29071 |
| S/G/Y/R/B/O |
NT_008583 | AC022022 | 65882816 | 3 | chr10 | NT_008583 | AL607062 | 66064424 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008583 | AC022022 | 65882816 | 3 |   |   | AC016197 | 65698546 | 1 | 113808 | 7233 | 11739 | 132780 |
| S/G/Y/R/B/O |
NT_008583 | AL607062 | 66064424 | 3 | chr10 | NT_008583 | AC022387 | 66150630 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008583 | AL607062 | 66064424 | 3 |   |   | AC010863 | 65748574 | 3 | 85010 | 0 | 0 | 85010 |
| S/G/Y/R/B/O |
NT_008583 | AL607062 | 66064424 | 3 |   |   | AC016197 | 65748574 | 1 | 41511 | 0 | 0 | 41511 |
| S/G/Y/R/B/O |
NT_008583 | AC022387 | 66150630 | 3 | chr10 | NT_008583 | AC069543 | 66334449 | 3 | 13299 | 0 | 0 | 13299 |
| S/G/Y/R/B/O |
NT_008583 | AC022387 | 66150630 | 3 | chr10 | NT_008583 | AC022361 | 64871970 | 1 | 68974 | 2103 | 13365 | 84442 |
| S/G/Y/R/B/O |
NT_008583 | AC022387 | 66150630 | 3 |   |   | AC010863 | 65748574 | 3 | 103707 | 0 | 0 | 103707 |
| S/G/Y/R/B/O |
NT_008583 | AC069543 | 66334449 | 3 | chr10 | NT_008583 | AC044782 | 66500932 | 3 | 121497 | 0 | 0 | 121497 |
| S/G/Y/R/B/O |
NT_008583 | AC069543 | 66334449 | 3 | chr10 | NT_008583 | AC022361 | 64871970 | 1 | 11019 | 2539 | 3751 | 17309 |
| S/G/Y/R/B/O |
NT_008583 | AC069543 | 66334449 | 3 |   |   | AC022396 | 78266393 | 1 | 13293 | 0 | 0 | 13293 |
| S/G/Y/R/B/O |
NT_008583 | AC069543 | 66334449 | 3 |   |   | AC060229 | 66500932 | 1 | 53737 | 0 | 0 | 53737 |
| S/G/Y/R/B/O |
NT_008583 | AC044782 | 66500932 | 3 | chr10 | NT_008583 | AC012558 | 66528469 | 3 | 33648 | 0 | 0 | 33648 |
| S/G/Y/R/B/O |
NT_008583 | AC044782 | 66500932 | 3 |   |   | AC060229 | 66528469 | 1 | 45326 | 0 | 0 | 45326 |
| S/G/Y/R/B/O |
NT_008583 | AC012558 | 66528469 | 3 | chr10 | NT_008583 | AC018977 | 66674212 | 3 | 85873 | 0 | 0 | 85873 |
| S/G/Y/R/B/O |
NT_008583 | AC012558 | 66528469 | 3 |   |   | AC060229 | 66500932 | 1 | 152277 | 0 | 0 | 152277 |
| S/G/Y/R/B/O |
NT_008583 | AC018977 | 66674212 | 3 | chr10 | NT_008583 | AC027670 | 66811142 | 3 | 12272 | 0 | 0 | 12272 |
| S/G/Y/R/B/O |
NT_008583 | AC018977 | 66674212 | 3 |   |   | AC060229 | 66811142 | 1 | 59138 | 0 | 0 | 59138 |
| S/G/Y/R/B/O |
NT_008583 | AC027670 | 66811142 | 3 | chr10 | NT_008583 | AL512450 | 67000947 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_008583 | AL512450 | 67000947 | 3 | chr10 | NT_008583 | AC013287 | 67034628 | 3 | 2838 | 0 | 0 | 2838 |
| S/G/Y/R/B/O |
NT_008583 | AC013287 | 67034628 | 3 | chr10 | NT_008583 | AC069020 | 67206368 | 3 | 8999 | 0 | 0 | 8999 |
| S/G/Y/R/B/O |
NT_008583 | AC069020 | 67206368 | 3 | chr10 | NT_008583 | AC024600 | 67375781 | 3 | 44074 | 0 | 0 | 44074 |
| S/G/Y/R/B/O |
NT_008583 | AC069020 | 67206368 | 3 |   |   | AC024960 | 67375781 | 1 | 33611 | 1642 | 1409 | 36662 |
| S/G/Y/R/B/O |
NT_008583 | AC069020 | 67206368 | 3 |   |   | AC048353 | 67375781 | 1 | 31592 | 1982 | 4355 | 37929 |
| S/G/Y/R/B/O |
NT_008583 | AC024600 | 67375781 | 3 | chr10 | NT_008583 | AL590411 | 67479477 | 3 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_008583 | AC024600 | 67375781 | 3 |   |   | AC024960 | 149571563 | 1 | 116779 | 6675 | 1413 | 124867 |
| S/G/Y/R/B/O |
NT_008583 | AC024600 | 67375781 | 3 |   |   | AC048353 | 149571563 | 1 | 125441 | 3930 | 15650 | 145021 |
| S/G/Y/R/B/O |
NT_008583 | AC024600 | 67375781 | 3 |   |   | AC091896 | 67206368 | 1 | 73365 | 0 | 1699 | 75064 |
| S/G/Y/R/B/O |
NT_008583 | AL590411 | 67479477 | 3 | chr10 | NT_008583 | AL590324 | 67605912 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008583 | AL590411 | 67479477 | 3 |   |   | AC091896 | 67375781 | 1 | 37571 | 5600 | 12828 | 55999 |
| S/G/Y/R/B/O |
NT_008583 | AL590324 | 67605912 | 3 | chr10 | NT_008583 | AL513321 | 67607906 | 2 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008583 | AL513321 | 67607906 | 2 | chr10 | NT_008583 | AL591687 | 67786882 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008583 | AL591687 | 67786882 | 3 | chr10 | NT_008583 | AL592466 | 67801579 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_008583 | AL592466 | 67801579 | 3 | chr10 | NT_008583 | AL390865 | 67912850 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_008583 | AL592466 | 67801579 | 3 |   |   | AL596063 | 67786882 | 2 | 64436 | 0 | 0 | 64436 |
| S/G/Y/R/B/O |
NT_008583 | AL390865 | 67912850 | 3 | chr10 | NT_008583 | AC020641 | 68060825 | 3 | 13051 | 0 | 0 | 13051 |
| S/G/Y/R/B/O |
NT_008583 | AL390865 | 67912850 | 3 |   |   | AL596063 | 67801579 | 2 | 105474 | 0 | 0 | 105474 |
| S/G/Y/R/B/O |
NT_008583 | AC020641 | 68060825 | 3 | chr10 | NT_008583 | AC022538 | 68213858 | 3 | 48233 | 0 | 0 | 48233 |
| S/G/Y/R/B/O |
NT_008583 | AC020641 | 68060825 | 3 |   |   | AC092367 | 68213858 | 1 | 82635 | 0 | 0 | 82635 |
| S/G/Y/R/B/O |
NT_008583 | AC022538 | 68213858 | 3 | chr10 | NT_008583 | AC018979 | 68331633 | 3 | 33764 | 0 | 0 | 33764 |
| S/G/Y/R/B/O |
NT_008583 | AC022538 | 68213858 | 3 |   |   | AC092367 | 68060825 | 1 | 45595 | 0 | 981 | 46576 |
| S/G/Y/R/B/O |
NT_008583 | AC018979 | 68331633 | 3 | chr10 | NT_008583 | AC022017 | 68499212 | 3 | 0 | 928 | 0 | 928 |
| S/G/Y/R/B/O |
NT_008583 | AC018979 | 68331633 | 3 | chr10 | NT_008583 | AP001355 | 69081450 | 1 | 56172 | 4339 | 15533 | 76044 |
| S/G/Y/R/B/O |
NT_008583 | AC018979 | 68331633 | 3 |   |   | AL513126 | 68213858 | 1 | 48358 | 0 | 0 | 48358 |
| S/G/Y/R/B/O |
NT_008583 | AC022017 | 68499212 | 3 | chr10 | NT_008583 | AL592075 | 68678446 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008583 | AC022017 | 68499212 | 3 | chr10 | NT_008583 | AC021888 | 68746369 | 1 | 75842 | 2537 | 0 | 78379 |
| S/G/Y/R/B/O |
NT_008583 | AC022017 | 68499212 | 3 | chr10 | NT_008583 | AP001355 | 69081450 | 1 | 95883 | 0 | 0 | 95883 |
| S/G/Y/R/B/O |
NT_008583 | AC022017 | 68499212 | 3 |   |   | AL513126 | 68746369 | 1 | 95090 | 0 | 0 | 95090 |
| S/G/Y/R/B/O |
NT_008583 | AL592075 | 68678446 | 3 | chr10 | NT_008583 | AC027675 | 68744845 | 1 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_008583 | AL592075 | 68678446 | 3 | chr10 | NT_008583 | AC021888 | 68746369 | 1 | 68005 | 0 | 0 | 68005 |
| S/G/Y/R/B/O |
NT_008583 | AC027675 | 68744845 | 1 | chr10 | NT_008583 | AC021888 | 68746369 | 1 | 18437 | 0 | 13148 | 31585 |
| S/G/Y/R/B/O |
NT_008583 | AC027675 | 68744845 | 1 | chr10 | NT_033220 | AC016819 | 69174740 | 3 | 10642 | 0 | 0 | 10642 |
| S/G/Y/R/B/O |
NT_008583 | AC021888 | 68746369 | 1 | chr10 | NT_008583 | AC007484 | 68831398 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008583 | AC021888 | 68746369 | 1 | chr10 | NT_008583 | AC022017 | 68499212 | 3 | 75842 | 2537 | 0 | 78379 |
| S/G/Y/R/B/O |
NT_008583 | AC021888 | 68746369 | 1 | chr10 | NT_008583 | AL592075 | 68678446 | 3 | 68005 | 0 | 0 | 68005 |
| S/G/Y/R/B/O |
NT_008583 | AC007484 | 68831398 | 1 | chr10 | NT_008583 | AC016043 | 68831636 | 1 | 124067 | 6801 | 24799 | 155667 |
| S/G/Y/R/B/O |
NT_008583 | AC007484 | 68831398 | 1 |   |   | AC069538 | 67993526 | 1 | 43424 | 2361 | 1211 | 46996 |
| S/G/Y/R/B/O |
NT_008583 | AC016043 | 68831636 | 1 | chr10 | NT_008583 | AP001355 | 69081450 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008583 | AC016043 | 68831636 | 1 |   |   | AC069538 | 67993526 | 1 | 48642 | 0 | 0 | 48642 |
| S/G/Y/R/B/O |
NT_008583 | AP001355 | 69081450 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008583 | AP001355 | 69081450 | 1 | chr10 | NT_008583 | AC018979 | 68331633 | 3 | 56172 | 4339 | 15533 | 76044 |
| S/G/Y/R/B/O |
NT_008583 | AP001355 | 69081450 | 1 | chr10 | NT_008583 | AC022017 | 68499212 | 3 | 95883 | 0 | 0 | 95883 |
| S/G/Y/R/B/O |
NT_008583 | AP001355 | 69081450 | 1 |   |   | AL513126 | 68499212 | 1 | 142937 | 2640 | 0 | 145577 |
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